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Geant4/examples/extended/medical/dna/dnadamage2/dnadamage2.cc

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Diff markup

Differences between /examples/extended/medical/dna/dnadamage2/dnadamage2.cc (Version 11.3.0) and /examples/extended/medical/dna/dnadamage2/dnadamage2.cc (Version 6.2.p1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // chem6 example is derived from chem4 and che    
 28 //                                                
 29 // Any report or published results obtained us    
 30 // shall cite the following Geant4-DNA collabo    
 31 // J. Appl. Phys. 125 (2019) 104301               
 32 // Med. Phys. 45 (2018) e722-e739                 
 33 // J. Comput. Phys. 274 (2014) 841-882            
 34 // Med. Phys. 37 (2010) 4692-4708                 
 35 // Int. J. Model. Simul. Sci. Comput. 1 (2010)    
 36 // The Geant4-DNA web site is available at htt    
 37 //                                                
 38 // Authors: J. Naoki D. Kondo (UCSF, US)          
 39 //          Jose Ramos-Mendez and Bruce Faddeg    
 40 //                                                
 41 /// \file dnadamage2.cc                           
 42 /// \brief DnaDamage2 example                     
 43                                                   
 44 #include "ActionInitialization.hh"                
 45 #include "DetectorConstruction.hh"                
 46 #include "PhysicsList.hh"                         
 47                                                   
 48 #include "G4DNAChemistryManager.hh"               
 49 #include "G4RunManagerFactory.hh"                 
 50 #include "G4UIExecutive.hh"                       
 51 #include "G4UImanager.hh"                         
 52 #include "G4VisExecutive.hh"                      
 53                                                   
 54 /*                                                
 55  * WARNING : Geant4 was initially not intended    
 56  * This code is delivered as a prototype          
 57  * We will be happy to hear from you, do not h    
 58  * and communicate on the difficulties you may    
 59  * The user interface may change in the next r    
 60  * the code has started                           
 61  */                                               
 62                                                   
 63 //....oooOO0OOooo........oooOO0OOooo........oo    
 64                                                   
 65 G4int fSeed = 1234;                               
 66                                                   
 67 //....oooOO0OOooo........oooOO0OOooo........oo    
 68                                                   
 69 int main(int argc, char** argv)                   
 70 {                                                 
 71   G4UIExecutive* ui = 0;                          
 72   if (argc == 1) {                                
 73     ui = new G4UIExecutive(argc, argv);           
 74   }                                               
 75                                                   
 76   G4Random::setTheEngine(new CLHEP::RanecuEngi    
 77                                                   
 78   auto* runManager = G4RunManagerFactory::Crea    
 79                                                   
 80   // Set mandatory initialization classes         
 81   DetectorConstruction* fpDetector = new Detec    
 82   ActionInitialization* fpActionIni = new Acti    
 83                                                   
 84   runManager->SetUserInitialization(new Physic    
 85   runManager->SetUserInitialization(fpDetector    
 86   runManager->SetUserInitialization(fpActionIn    
 87                                                   
 88   // get the pointer to the User Interface man    
 89   G4UImanager* UI = G4UImanager::GetUIpointer(    
 90   G4VisManager* vM = new G4VisExecutive;          
 91                                                   
 92   G4String fileName = "";                         
 93   G4String command = "/control/execute ";         
 94                                                   
 95   if (argc == 1) {                                
 96     vM->Initialize();                             
 97     G4Random::setTheSeed(fSeed);                  
 98     UI->ApplyCommand("/control/execute init_vi    
 99     ui->SessionStart();                           
100     delete ui;                                    
101   }                                               
102                                                   
103   else if (argc == 2)  // batch mode              
104   {                                               
105     fileName = argv[1];                           
106   }                                               
107                                                   
108   else if (argc > 2) {                            
109     fileName = argv[1];                           
110     fSeed = atoi(argv[2]);                        
111   }                                               
112                                                   
113   if (argc > 1) {                                 
114     G4Random::setTheSeed(fSeed);                  
115     UI->ApplyCommand(command + fileName);         
116   }                                               
117                                                   
118   // Job termination                              
119   // Free the store: user actions, physics_lis    
120   // owned and deleted by the run manager, so     
121   // in the main() program !                      
122   delete runManager;                              
123   delete vM;                                      
124   return 0;                                       
125 }                                                 
126                                                   
127 //....oooOO0OOooo........oooOO0OOooo........oo    
128