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Geant4/examples/extended/medical/dna/clustering/src/EventAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/clustering/src/EventAction.cc (Version 11.3.0) and /examples/extended/medical/dna/clustering/src/EventAction.cc (Version 10.3.p1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at htt     30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //                                                 31 //
                                                   >>  32 // $Id$
 32 //                                                 33 //
 33 /// \file EventAction.cc                           34 /// \file EventAction.cc
 34 /// \brief Implementation of the EventAction c     35 /// \brief Implementation of the EventAction class
 35                                                    36 
 36 #include "EventAction.hh"                          37 #include "EventAction.hh"
 37                                                    38 
                                                   >>  39 #include "Analysis.hh"
 38 #include "ClusteringAlgo.hh"                       40 #include "ClusteringAlgo.hh"
 39                                                    41 
 40 #include "G4AnalysisManager.hh"                << 
 41 #include "G4Event.hh"                              42 #include "G4Event.hh"
 42 #include "G4LogicalVolume.hh"                      43 #include "G4LogicalVolume.hh"
 43 #include "G4LogicalVolumeStore.hh"                 44 #include "G4LogicalVolumeStore.hh"
 44 #include "G4SystemOfUnits.hh"                      45 #include "G4SystemOfUnits.hh"
 45 #include "Randomize.hh"                            46 #include "Randomize.hh"
 46                                                    47 
 47 //....oooOO0OOooo........oooOO0OOooo........oo     48 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 48                                                    49 
 49 EventAction::EventAction() : G4UserEventAction <<  50 EventAction::EventAction():G4UserEventAction()
 50 {                                                  51 {
 51   // default parameter values                  <<  52   //default parameter values
 52   fEdep = 0.;                                  <<  53   fEdep=0.;
 53                                                    54 
 54   // Create clustering algorithm                   55   // Create clustering algorithm
 55   // These default values have been tuned for      56   // These default values have been tuned for the Physics List G4EmDNAPhysics
 56   // to reproduce data published by:               57   // to reproduce data published by:
 57   // Francis et al. 2011 Comput. Meth. Program     58   // Francis et al. 2011 Comput. Meth. Programs. Biomed. 2011 101(3)
 58   fpClustering = new ClusteringAlgo(3.3 * nano <<  59   fpClustering = new ClusteringAlgo(3.3*nanometer,2,0.2,5*eV,37.5*eV);
 59 }                                                  60 }
 60                                                    61 
 61 //....oooOO0OOooo........oooOO0OOooo........oo     62 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 62                                                    63 
 63 EventAction::~EventAction()                        64 EventAction::~EventAction()
 64 {                                                  65 {
 65   delete fpClustering;                             66   delete fpClustering;
 66 }                                                  67 }
 67                                                    68 
 68 //....oooOO0OOooo........oooOO0OOooo........oo     69 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 69                                                    70 
 70 void EventAction::BeginOfEventAction(const G4E <<  71 void EventAction::BeginOfEventAction( const G4Event*)
 71 {                                                  72 {
 72   fEdep = 0.;                                  <<  73   fEdep=0.;
 73   fpClustering->Purge();                           74   fpClustering->Purge();
 74 }                                                  75 }
 75                                                    76 
 76 //....oooOO0OOooo........oooOO0OOooo........oo     77 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 77                                                    78 
 78 void EventAction::EndOfEventAction(const G4Eve <<  79 void EventAction::EndOfEventAction( const G4Event*)
 79 {                                                  80 {
 80   std::map<G4int, G4int> sizeDistribution = fp <<  81   std::map<G4int,G4int> sizeDistribution = fpClustering->RunClustering();
 81                                                    82 
 82   G4AnalysisManager* analysisManager = G4Analy     83   G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
 83                                                    84 
 84   analysisManager->FillH1(1, fpClustering->Get <<  85   analysisManager->FillH1(1,fpClustering->GetSSB());
 85   analysisManager->FillH1(2, fpClustering->Get <<  86   analysisManager->FillH1(2,fpClustering->GetComplexSSB());
 86   analysisManager->FillH1(3, fpClustering->Get <<  87   analysisManager->FillH1(3,fpClustering->GetDSB());
 87                                                <<  88 
 88   while (!sizeDistribution.empty()) {          <<  89   while ( !sizeDistribution.empty() )
 89     analysisManager->FillH1(4, sizeDistributio <<  90   {
                                                   >>  91     analysisManager->FillH1(4,
                                                   >>  92                             sizeDistribution.begin()->first,
                                                   >>  93                             sizeDistribution.begin()->second);
 90     sizeDistribution.erase(sizeDistribution.be     94     sizeDistribution.erase(sizeDistribution.begin());
 91   }                                            <<  95   } 
 92                                                    96 
 93   analysisManager->FillH1(                     <<  97   analysisManager->FillH1(5,
 94     5,                                         <<  98                           (fEdep/joule)/
 95     (fEdep / joule) / (G4LogicalVolumeStore::G <<  99                           (G4LogicalVolumeStore::GetInstance()->
                                                   >> 100                               GetVolume("Target")->GetMass()/kg)
                                                   >> 101   );
 96 }                                                 102 }
 97                                                   103