Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/clustering/clustering.cc

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Diff markup

Differences between /examples/extended/medical/dna/clustering/clustering.cc (Version 11.3.0) and /examples/extended/medical/dna/clustering/clustering.cc (Version 9.0.p1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // The Geant4-DNA web site is available at htt    
 31 //                                                
 32 //                                                
 33 /// \file clustering.cc                           
 34 /// \brief clustering example                     
 35                                                   
 36 #include "ActionInitialization.hh"                
 37 #include "CommandLineParser.hh"                   
 38 #include "DetectorConstruction.hh"                
 39 #include "PhysicsList.hh"                         
 40                                                   
 41 #include "G4DNAChemistryManager.hh"               
 42 #include "G4RunManagerFactory.hh"                 
 43 #include "G4UIExecutive.hh"                       
 44 #include "G4UImanager.hh"                         
 45 #include "G4VisExecutive.hh"                      
 46                                                   
 47 using namespace G4DNAPARSER;                      
 48 CommandLineParser* parser(0);                     
 49                                                   
 50 //....oooOO0OOooo........oooOO0OOooo........oo    
 51                                                   
 52 void Parse(int& argc, char** argv);               
 53                                                   
 54 //....oooOO0OOooo........oooOO0OOooo........oo    
 55                                                   
 56 int main(int argc, char** argv)                   
 57 {                                                 
 58   //////////                                      
 59   // Parse options given in commandLine           
 60   //                                              
 61   Parse(argc, argv);                              
 62                                                   
 63   //////////                                      
 64   // Construct the run manager according to wh    
 65   //                                              
 66   Command* commandLine(0);                        
 67                                                   
 68   auto* runManager = G4RunManagerFactory::Crea    
 69   if ((commandLine = parser->GetCommandIfActiv    
 70     int nThreads = 2;                             
 71     if (commandLine->GetOption() == "NMAX") {     
 72       nThreads = G4Threading::G4GetNumberOfCor    
 73     }                                             
 74     else {                                        
 75       nThreads = G4UIcommand::ConvertToInt(com    
 76     }                                             
 77     runManager->SetNumberOfThreads(nThreads);     
 78                                                   
 79     G4cout << "===== clustering is started wit    
 80            << " threads =====" << G4endl;         
 81   }                                               
 82                                                   
 83   //////////                                      
 84   // Set mandatory user initialization classes    
 85   //                                              
 86   DetectorConstruction* detector = new Detecto    
 87   runManager->SetUserInitialization(new Physic    
 88   runManager->SetUserInitialization(detector);    
 89   runManager->SetUserInitialization(new Action    
 90                                                   
 91   // Initialize G4 kernel                         
 92   runManager->Initialize();                       
 93                                                   
 94   // Initialize visualization                     
 95   G4VisManager* visManager = new G4VisExecutiv    
 96   visManager->Initialize();                       
 97                                                   
 98   // Get the pointer to the User Interface man    
 99   G4UImanager* UImanager = G4UImanager::GetUIp    
100   G4UIExecutive* ui(0);                           
101                                                   
102   // interactive mode : define UI session         
103   if ((commandLine = parser->GetCommandIfActiv    
104     ui = new G4UIExecutive(argc, argv, command    
105                                                   
106     if (ui->IsGUI()) UImanager->ApplyCommand("    
107                                                   
108     if (parser->GetCommandIfActive("-novis") =    
109     // visualization is used by default           
110     {                                             
111       if ((commandLine = parser->GetCommandIfA    
112       // select a visualization driver if need    
113       {                                           
114         UImanager->ApplyCommand(G4String("/vis    
115       }                                           
116       else                                        
117       // by default OGL is used                   
118       {                                           
119         UImanager->ApplyCommand("/vis/open OGL    
120       }                                           
121       UImanager->ApplyCommand("/control/execut    
122     }                                             
123   }                                               
124   else                                            
125   // to be use visualization file (= store the    
126   // an external file:                            
127   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML    
128   {                                               
129     if ((commandLine = parser->GetCommandIfAct    
130       UImanager->ApplyCommand(G4String("/vis/o    
131       UImanager->ApplyCommand("/control/execut    
132     }                                             
133   }                                               
134                                                   
135   if ((commandLine = parser->GetCommandIfActiv    
136     G4String command = "/control/execute ";       
137     UImanager->ApplyCommand(command + commandL    
138   }                                               
139   else {                                          
140     UImanager->ApplyCommand("/control/execute     
141   }                                               
142                                                   
143   if ((commandLine = parser->GetCommandIfActiv    
144     ui->SessionStart();                           
145     delete ui;                                    
146   }                                               
147                                                   
148   // Job termination                              
149   // Free the store: user actions, physics_lis    
150   // owned and deleted by the run manager, so     
151   // in the main() program !                      
152                                                   
153   delete visManager;                              
154   delete runManager;                              
155                                                   
156   CommandLineParser::DeleteInstance();            
157                                                   
158   return 0;                                       
159 }                                                 
160                                                   
161 //....oooOO0OOooo........oooOO0OOooo........oo    
162                                                   
163 void Parse(int& argc, char** argv)                
164 {                                                 
165   //////////                                      
166   // Parse options given in commandLine           
167   //                                              
168   parser = CommandLineParser::GetParser();        
169                                                   
170   parser->AddCommand("-gui", Command::OptionNo    
171                      "Select geant4 UI or just    
172                                                   
173   parser->AddCommand("-mac", Command::WithOpti    
174                                                   
175   // You cann your own command, as for instanc    
176   //  parser->AddCommand("-seed",                 
177   //                     Command::WithOption,     
178   //                     "Give a seed value in    
179   // it is then up to you to manage this optio    
180                                                   
181   parser->AddCommand("-mt", Command::WithOptio    
182                      "Launch in MT mode (event    
183                      " NOT RECOMMENDED WITH CH    
184                      "2");                        
185                                                   
186   parser->AddCommand("-vis", Command::WithOpti    
187                      "OGL 600x600-0+0");          
188                                                   
189   parser->AddCommand("-novis", Command::Withou    
190                                                   
191   //////////                                      
192   // If -h or --help is given in option : prin    
193   //                                              
194   if (parser->Parse(argc, argv) != 0)  // help    
195   {                                               
196     // if you are using ROOT, create a TApplic    
197     // to print the help from ROOT as well        
198     CommandLineParser::DeleteInstance();          
199     // Exit is kept                               
200     std::exit(0);                                 
201   }                                               
202                                                   
203   ///////////                                     
204   // Kill application if wrong argument in com    
205   //                                              
206   if (parser->CheckIfNotHandledOptionsExists(a    
207     // if you are using ROOT, you should initi    
208     // before this condition                      
209     abort();                                      
210   }                                               
211 }                                                 
212