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Geant4/examples/extended/medical/dna/chem3/src/TimeStepAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem3/src/TimeStepAction.cc (Version 11.3.0) and /examples/extended/medical/dna/chem3/src/TimeStepAction.cc (Version 3.0)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // J. Comput. Phys. 274 (2014) 841-882            
 31 // The Geant4-DNA web site is available at htt    
 32 //                                                
 33 //                                                
 34 /// \file TimeStepAction.hh                       
 35 /// \brief Implementation of the TimeStepActio    
 36                                                   
 37 #include "TimeStepAction.hh"                      
 38                                                   
 39 #include "G4MolecularConfiguration.hh"            
 40 #include "G4Molecule.hh"                          
 41 #include "G4MoleculeTable.hh"                     
 42 #include "G4SystemOfUnits.hh"                     
 43 #include "G4UnitsTable.hh"                        
 44                                                   
 45 #include <G4Scheduler.hh>                         
 46                                                   
 47 TimeStepAction::TimeStepAction() : G4UserTimeS    
 48 {                                                 
 49   /**                                             
 50    * Give to G4ITTimeStepper the user defined     
 51    * eg : from 1 picosecond to 10 picosecond,     
 52    * step that the TimeStepper can returned is    
 53    * Those time steps are used for the chemist    
 54    */                                             
 55                                                   
 56   AddTimeStep(1 * picosecond, 0.1 * picosecond    
 57   AddTimeStep(10 * picosecond, 1 * picosecond)    
 58   AddTimeStep(100 * picosecond, 3 * picosecond    
 59   AddTimeStep(1000 * picosecond, 10 * picoseco    
 60   AddTimeStep(10000 * picosecond, 100 * picose    
 61 }                                                 
 62                                                   
 63 //....oooOO0OOooo........oooOO0OOooo........oo    
 64                                                   
 65 void TimeStepAction::UserPostTimeStepAction()     
 66 {                                                 
 67   if (G4Scheduler::Instance()->GetGlobalTime()    
 68     G4cout << "_________________" << G4endl;      
 69     G4cout << "At : " << G4BestUnit(G4Schedule    
 70                                                   
 71     auto species = G4MoleculeTable::Instance()    
 72     PrintSpecieInfo(species);                     
 73   }                                               
 74 }                                                 
 75                                                   
 76 //....oooOO0OOooo........oooOO0OOooo........oo    
 77                                                   
 78 void TimeStepAction::UserReactionAction(const     
 79                                         const     
 80 {                                                 
 81   // this function shows how to get species ID    
 82   G4cout << G4endl;                               
 83                                                   
 84   G4cout << "At : " << G4Scheduler::Instance()    
 85          << " (ns) reactantA = " << GetMolecul    
 86          << " (ID number = " << reactantA.GetT    
 87          << " at position : " << reactantA.Get    
 88          << " reacts with reactantB = " << Get    
 89          << " (ID number = " << reactantB.GetT    
 90          << " at position : " << reactantA.Get    
 91                                                   
 92   if (products) {                                 
 93     auto nbProducts = (G4int)products->size();    
 94     for (G4int i = 0; i < nbProducts; i++) {      
 95       G4cout << "      creating product " << i    
 96              << " position : " << (*products)[    
 97     }                                             
 98   }                                               
 99   G4cout << G4endl;                               
100 }                                                 
101                                                   
102 void TimeStepAction::PrintSpecieInfo(G4Molecul    
103 {                                                 
104   // this function shows how to get a specific    
105   auto moleculeID = molconf->GetMoleculeID();     
106   const G4String& moleculeName = molconf->GetF    
107   G4cout << "Get inf of : " << moleculeName <<    
108   auto trackList = G4ITTrackHolder::Instance()    
109                                                   
110   if (trackList == nullptr) {                     
111     G4cout << "No species" << G4endl;             
112     return;                                       
113   }                                               
114   G4TrackList::iterator it = trackList->begin(    
115   G4TrackList::iterator end = trackList->end()    
116   for (; it != end; ++it) {                       
117     auto track = *it;                             
118     G4cout << "TrackID: " << track->GetTrackID    
119            << G4endl;                             
120   }                                               
121 }                                                 
122