| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // J. Comput. Phys. 274 (2014) 841-882 30 // J. Comput. Phys. 274 (2014) 841-882
31 // The Geant4-DNA web site is available at htt 31 // The Geant4-DNA web site is available at http://geant4-dna.org
32 // 32 //
33 // 33 //
34 /// \file TimeStepAction.hh 34 /// \file TimeStepAction.hh
35 /// \brief Implementation of the TimeStepActio 35 /// \brief Implementation of the TimeStepAction class
36 36
37 #include "TimeStepAction.hh" 37 #include "TimeStepAction.hh"
38 38
39 #include "G4MolecularConfiguration.hh" <<
40 #include "G4Molecule.hh" <<
41 #include "G4MoleculeTable.hh" <<
42 #include "G4SystemOfUnits.hh" <<
43 #include "G4UnitsTable.hh" <<
44 <<
45 #include <G4Scheduler.hh> 39 #include <G4Scheduler.hh>
>> 40 #include "G4UnitsTable.hh"
>> 41 #include "G4SystemOfUnits.hh"
>> 42 //#include "G4Molecule.hh"
46 43
47 TimeStepAction::TimeStepAction() : G4UserTimeS 44 TimeStepAction::TimeStepAction() : G4UserTimeStepAction()
48 { 45 {
49 /** 46 /**
50 * Give to G4ITTimeStepper the user defined 47 * Give to G4ITTimeStepper the user defined time steps
51 * eg : from 1 picosecond to 10 picosecond, 48 * eg : from 1 picosecond to 10 picosecond, the minimum time
52 * step that the TimeStepper can returned is 49 * step that the TimeStepper can returned is 0.1 picosecond.
53 * Those time steps are used for the chemist 50 * Those time steps are used for the chemistry of G4DNA
54 */ 51 */
55 52
56 AddTimeStep(1 * picosecond, 0.1 * picosecond << 53 AddTimeStep(1*picosecond, 0.1*picosecond);
57 AddTimeStep(10 * picosecond, 1 * picosecond) << 54 AddTimeStep(10*picosecond, 1*picosecond);
58 AddTimeStep(100 * picosecond, 3 * picosecond << 55 AddTimeStep(100*picosecond, 3*picosecond);
59 AddTimeStep(1000 * picosecond, 10 * picoseco << 56 AddTimeStep(1000*picosecond, 10*picosecond);
60 AddTimeStep(10000 * picosecond, 100 * picose << 57 AddTimeStep(10000*picosecond, 100*picosecond);
61 } 58 }
62 59
63 //....oooOO0OOooo........oooOO0OOooo........oo 60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
64 61
65 void TimeStepAction::UserPostTimeStepAction() << 62 TimeStepAction::~TimeStepAction()
66 { 63 {
67 if (G4Scheduler::Instance()->GetGlobalTime() << 64 //dtor
68 G4cout << "_________________" << G4endl; << 65 }
69 G4cout << "At : " << G4BestUnit(G4Schedule <<
70 66
71 auto species = G4MoleculeTable::Instance() << 67 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
72 PrintSpecieInfo(species); << 68
73 } << 69 TimeStepAction::TimeStepAction(const TimeStepAction& other) :
>> 70 G4UserTimeStepAction(other)
>> 71 {
>> 72 //copy ctor
74 } 73 }
75 74
76 //....oooOO0OOooo........oooOO0OOooo........oo 75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
77 76
78 void TimeStepAction::UserReactionAction(const << 77 TimeStepAction&
79 const << 78 TimeStepAction::operator=(const TimeStepAction& rhs)
80 { 79 {
81 // this function shows how to get species ID << 80 if (this == &rhs) return *this; // handle self assignment
82 G4cout << G4endl; << 81 //assignment operator
>> 82 return *this;
>> 83 }
83 84
84 G4cout << "At : " << G4Scheduler::Instance() << 85 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
85 << " (ns) reactantA = " << GetMolecul << 86
86 << " (ID number = " << reactantA.GetT << 87 void TimeStepAction::UserPostTimeStepAction()
87 << " at position : " << reactantA.Get << 88 {
88 << " reacts with reactantB = " << Get << 89 // G4cout << "_________________" << G4endl;
89 << " (ID number = " << reactantB.GetT << 90 /*
90 << " at position : " << reactantA.Get << 91 G4cout << "Time Step : "
91 << 92 << G4BestUnit(G4ITScheduler::Instance()->GetTimeStep(),
92 if (products) { << 93 "Time")
93 auto nbProducts = (G4int)products->size(); << 94 << G4endl;
94 for (G4int i = 0; i < nbProducts; i++) { << 95
95 G4cout << " creating product " << i << 96 G4cout << "End of step: "
96 << " position : " << (*products)[ << 97 << G4BestUnit(G4ITScheduler::Instance()->GetGlobalTime(),
97 } << 98 "Time")
98 } << 99 << G4endl;
99 G4cout << G4endl; << 100 */
100 } 101 }
101 102
102 void TimeStepAction::PrintSpecieInfo(G4Molecul << 103 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
>> 104
>> 105 void TimeStepAction::UserReactionAction(const G4Track& /*a*/,
>> 106 const G4Track& /*b*/,
>> 107 const std::vector<G4Track*>* /*products*/)
103 { 108 {
104 // this function shows how to get a specific << 109 // Example to display reactions with product
105 auto moleculeID = molconf->GetMoleculeID(); << 110 // S. Incerti, H. Tran
106 const G4String& moleculeName = molconf->GetF << 111 // 2019/01/24
107 G4cout << "Get inf of : " << moleculeName << << 112
108 auto trackList = G4ITTrackHolder::Instance() << 113 /*
109 << 114 if (products)
110 if (trackList == nullptr) { << 115 {
111 G4cout << "No species" << G4endl; << 116 G4cout << G4endl;
112 return; << 117 G4int nbProducts = products->size();
>> 118 for (int i = 0 ; i < nbProducts ; i ++)
>> 119 {
>> 120 G4cout << "-> A = "
>> 121 << GetMolecule(&a)->GetName() << " (TrackID=" << a.GetTrackID() << ")"
>> 122 << " reacts with B = "
>> 123 << GetMolecule(&b)->GetName() << " (TrackID=" << b.GetTrackID() << ")"
>> 124 << " creating product " << i+1 << " ="
>> 125 << GetMolecule((*products)[i])->GetName()
>> 126 << G4endl ;
>> 127
>> 128 G4cout
>> 129 <<" A position: x(nm)="<<a.GetPosition().getX()/nm
>> 130 <<" y(nm)="<<a.GetPosition().getY()/nm
>> 131 <<" z(nm)="<<a.GetPosition().getZ()/nm
>> 132 <<G4endl;
>> 133
>> 134 G4cout
>> 135 <<" B position: x(nm)="<<b.GetPosition().getX()/nm
>> 136 <<" y(nm)="<<b.GetPosition().getY()/nm
>> 137 <<" z(nm)="<<b.GetPosition().getZ()/nm
>> 138 <<G4endl;
>> 139
>> 140 G4cout
>> 141 <<" Product " << i+1 << "position: x(nm)="<<(*products)[i]->GetPosition().getX()/nm
>> 142 <<" y(nm)="<<a.GetPosition().getY()/nm
>> 143 <<" z(nm)="<<a.GetPosition().getZ()/nm
>> 144 <<G4endl;
>> 145 }
113 } 146 }
114 G4TrackList::iterator it = trackList->begin( << 147
115 G4TrackList::iterator end = trackList->end() << 148 else
116 for (; it != end; ++it) { << 149
117 auto track = *it; << 150 {
118 G4cout << "TrackID: " << track->GetTrackID << 151 G4cout << G4endl;
119 << G4endl; << 152 G4cout << "-> A = "
>> 153 << GetMolecule(&a)->GetName() << " (TrackID=" << a.GetTrackID() << ")"
>> 154 << " reacts with B = "
>> 155 << GetMolecule(&b)->GetName() << " (TrackID=" << b.GetTrackID() << ")"
>> 156 << G4endl ;
>> 157
>> 158 G4cout
>> 159 <<" A position: x(nm)="<<a.GetPosition().getX()/nm
>> 160 <<" y(nm)="<<a.GetPosition().getY()/nm
>> 161 <<" z(nm)="<<a.GetPosition().getZ()/nm
>> 162 <<G4endl;
>> 163
>> 164 G4cout
>> 165 <<" B position: x(nm)="<<b.GetPosition().getX()/nm
>> 166 <<" y(nm)="<<b.GetPosition().getY()/nm
>> 167 <<" z(nm)="<<b.GetPosition().getZ()/nm
>> 168 <<G4endl;
>> 169
120 } 170 }
>> 171 */
>> 172
121 } 173 }
122 174