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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // J. Comput. Phys. 274 (2014) 841-882 30 // J. Comput. Phys. 274 (2014) 841-882
31 // The Geant4-DNA web site is available at htt 31 // The Geant4-DNA web site is available at http://geant4-dna.org
32 // 32 //
33 // 33 //
34 /// \file DetectorConstruction.cc 34 /// \file DetectorConstruction.cc
35 /// \brief Implementation of the DetectorConst 35 /// \brief Implementation of the DetectorConstruction class
36 36
37 #include "ActionInitialization.hh" 37 #include "ActionInitialization.hh"
38 38
39 #include "DetectorConstruction.hh" <<
40 #include "PrimaryGeneratorAction.hh" 39 #include "PrimaryGeneratorAction.hh"
41 #include "RunAction.hh" 40 #include "RunAction.hh"
42 #include "SteppingAction.hh" 41 #include "SteppingAction.hh"
>> 42 #include "DetectorConstruction.hh"
43 #include "TrackingAction.hh" 43 #include "TrackingAction.hh"
>> 44 #include "G4RunManager.hh"
>> 45
>> 46 #include "PrimaryGeneratorAction.hh"
>> 47 #include "RunAction.hh"
>> 48 #include "SteppingAction.hh"
44 49
45 #include "G4DNAChemistryManager.hh" 50 #include "G4DNAChemistryManager.hh"
46 #include "G4RunManager.hh" << 51
47 #include "G4SystemOfUnits.hh" 52 #include "G4SystemOfUnits.hh"
48 #include "G4Threading.hh" <<
49 #include "G4UnitsTable.hh" 53 #include "G4UnitsTable.hh"
50 54
>> 55 #include "G4Threading.hh"
>> 56
>> 57 #include "TrackingAction.hh"
>> 58
51 // chemistry 59 // chemistry
52 #include "ITSteppingAction.hh" << 60 #include "G4Scheduler.hh"
53 #include "ITTrackingAction.hh" <<
54 #include "ITTrackingInteractivity.hh" <<
55 #include "StackingAction.hh" 61 #include "StackingAction.hh"
56 #include "TimeStepAction.hh" 62 #include "TimeStepAction.hh"
57 << 63 #include "ITTrackingInteractivity.hh"
58 #include "G4Scheduler.hh" << 64 #include "ITSteppingAction.hh"
>> 65 #include "ITTrackingAction.hh"
59 66
60 //....oooOO0OOooo........oooOO0OOooo........oo 67 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
61 68
62 ActionInitialization::ActionInitialization() : << 69 ActionInitialization::ActionInitialization() : G4VUserActionInitialization()
>> 70 {
>> 71 }
63 72
64 //....oooOO0OOooo........oooOO0OOooo........oo 73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
65 74
66 ActionInitialization::~ActionInitialization() << 75 ActionInitialization::~ActionInitialization()
>> 76 {}
67 77
68 //....oooOO0OOooo........oooOO0OOooo........oo 78 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
69 79
70 void ActionInitialization::BuildForMaster() co 80 void ActionInitialization::BuildForMaster() const
71 { 81 {
72 // In MT mode, to be clearer, the RunAction << 82 // In MT mode, to be clearer, the RunAction class for the master thread might
73 // be different than the one used for the wo << 83 // be different than the one used for the workers.
74 // This RunAction will be called before and << 84 // This RunAction will be called before and after starting the
75 // workers. << 85 // workers.
76 // For more details, please refer to : << 86 // For more details, please refer to :
77 // https://twiki.cern.ch/twiki/bin/view/Gean << 87 // https://twiki.cern.ch/twiki/bin/view/Geant4/Geant4MTForApplicationDevelopers
78 // << 88 //
79 // RunAction* runAction= new RunAction(); << 89 // RunAction* runAction= new RunAction();
80 // SetUserAction(runAction); << 90 // SetUserAction(runAction);
81 } 91 }
82 92
83 void ActionInitialization::Build() const 93 void ActionInitialization::Build() const
84 { 94 {
85 PrimaryGeneratorAction* primGenAction = new 95 PrimaryGeneratorAction* primGenAction = new PrimaryGeneratorAction;
86 SetUserAction(primGenAction); 96 SetUserAction(primGenAction);
87 97
88 // Set optional user action classes 98 // Set optional user action classes
89 SetUserAction(new RunAction()); 99 SetUserAction(new RunAction());
90 SetUserAction(new TrackingAction()); 100 SetUserAction(new TrackingAction());
91 SetUserAction(new SteppingAction()); 101 SetUserAction(new SteppingAction());
92 SetUserAction(new StackingAction()); 102 SetUserAction(new StackingAction());
93 103
94 // chemistry part 104 // chemistry part
95 if (G4DNAChemistryManager::IsActivated()) { << 105 if(G4DNAChemistryManager::IsActivated()){
96 G4Scheduler::Instance()->SetUserAction(new 106 G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
97 107
98 // Uncomment and set to stop chemistry sta 108 // Uncomment and set to stop chemistry stage after:
99 // ...given number of time steps 109 // ...given number of time steps
100 // G4Scheduler::Instance()->SetMaxNbSteps( << 110 //G4Scheduler::Instance()->SetMaxNbSteps(1000);
101 111
102 // ...OR reaching this time 112 // ...OR reaching this time
103 G4Scheduler::Instance()->SetEndTime(100 * << 113 G4Scheduler::Instance()->SetEndTime(100*nanosecond);
104 114
105 G4Scheduler::Instance()->SetVerbose(1); 115 G4Scheduler::Instance()->SetVerbose(1);
106 116
107 ITTrackingInteractivity* itInteractivity = 117 ITTrackingInteractivity* itInteractivity = new ITTrackingInteractivity();
108 itInteractivity->SetUserAction(new ITStepp 118 itInteractivity->SetUserAction(new ITSteppingAction);
109 itInteractivity->SetUserAction(new ITTrack 119 itInteractivity->SetUserAction(new ITTrackingAction);
110 G4Scheduler::Instance()->SetInteractivity( 120 G4Scheduler::Instance()->SetInteractivity(itInteractivity);
111 } 121 }
112 /* << 122 /*
113 // To output the pre-chemical stage << 123 // To output the pre-chemical stage
114 // << 124 //
115 G4String fileName ("output"); << 125 G4String fileName ("output");
116 << 126
117 if(G4RunManager::GetRunManager()->GetRunMa << 127 if(G4RunManager::GetRunManager()->GetRunManagerType() ==
118 G4RunManager::sequentialRM) << 128 G4RunManager::sequentialRM)
119 { << 129 {
120 // write initial situation at 1 picoseco << 130 // write initial situation at 1 picosecond
121 G4DNAChemistryManager::Instance()->Write << 131 G4DNAChemistryManager::Instance()->WriteInto(fileName + ".txt");
122 } << 132 }
123 else << 133 else
124 { << 134 {
125 G4int id = G4Threading::G4GetThreadId(); << 135 G4int id = G4Threading::G4GetThreadId();
126 << 136
127 G4String fileName_mt = fileName; << 137 G4String fileName_mt = fileName;
128 fileName_mt += G4UIcommand::ConvertToStr << 138 fileName_mt += G4UIcommand::ConvertToString(id);
129 fileName_mt += ".txt"; << 139 fileName_mt += ".txt";
130 << 140
131 G4cout << "chosen file name : " << fileN << 141 G4cout << "chosen file name : " << fileName_mt << G4endl;
132 << 142
133 G4DNAChemistryManager::Instance()->Write << 143 G4DNAChemistryManager::Instance()->WriteInto(fileName_mt);
134 } << 144 }
135 */ << 145 */
136 } << 146 }
137 147