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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // J. Comput. Phys. 274 (2014) 841-882 30 // J. Comput. Phys. 274 (2014) 841-882
31 // The Geant4-DNA web site is available at htt 31 // The Geant4-DNA web site is available at http://geant4-dna.org
32 // 32 //
>> 33 // $Id$
33 // 34 //
34 /// \file DetectorConstruction.cc 35 /// \file DetectorConstruction.cc
35 /// \brief Implementation of the DetectorConst 36 /// \brief Implementation of the DetectorConstruction class
36 37
37 #include "ActionInitialization.hh" 38 #include "ActionInitialization.hh"
38 39
39 #include "DetectorConstruction.hh" <<
40 #include "PrimaryGeneratorAction.hh" 40 #include "PrimaryGeneratorAction.hh"
41 #include "RunAction.hh" 41 #include "RunAction.hh"
42 #include "SteppingAction.hh" 42 #include "SteppingAction.hh"
>> 43 #include "DetectorConstruction.hh"
43 #include "TrackingAction.hh" 44 #include "TrackingAction.hh"
>> 45 #include "G4RunManager.hh"
>> 46
>> 47 #include "PrimaryGeneratorAction.hh"
>> 48 #include "RunAction.hh"
>> 49 #include "SteppingAction.hh"
44 50
45 #include "G4DNAChemistryManager.hh" 51 #include "G4DNAChemistryManager.hh"
46 #include "G4RunManager.hh" << 52
47 #include "G4SystemOfUnits.hh" 53 #include "G4SystemOfUnits.hh"
48 #include "G4Threading.hh" <<
49 #include "G4UnitsTable.hh" 54 #include "G4UnitsTable.hh"
50 55
>> 56 #include "G4Threading.hh"
>> 57
>> 58 #include "TrackingAction.hh"
>> 59
51 // chemistry 60 // chemistry
52 #include "ITSteppingAction.hh" << 61 #include "G4Scheduler.hh"
53 #include "ITTrackingAction.hh" <<
54 #include "ITTrackingInteractivity.hh" <<
55 #include "StackingAction.hh" 62 #include "StackingAction.hh"
56 #include "TimeStepAction.hh" 63 #include "TimeStepAction.hh"
57 << 64 #include "ITTrackingInteractivity.hh"
58 #include "G4Scheduler.hh" << 65 #include "ITSteppingAction.hh"
>> 66 #include "ITTrackingAction.hh"
59 67
60 //....oooOO0OOooo........oooOO0OOooo........oo 68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
61 69
62 ActionInitialization::ActionInitialization() : << 70 ActionInitialization::ActionInitialization() : G4VUserActionInitialization()
>> 71 {
>> 72 }
63 73
64 //....oooOO0OOooo........oooOO0OOooo........oo 74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
65 75
66 ActionInitialization::~ActionInitialization() << 76 ActionInitialization::~ActionInitialization()
>> 77 {}
67 78
68 //....oooOO0OOooo........oooOO0OOooo........oo 79 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
69 80
70 void ActionInitialization::BuildForMaster() co 81 void ActionInitialization::BuildForMaster() const
71 { 82 {
72 // In MT mode, to be clearer, the RunAction << 83 // In MT mode, to be clearer, the RunAction class for the master thread might
73 // be different than the one used for the wo << 84 // be different than the one used for the workers.
74 // This RunAction will be called before and << 85 // This RunAction will be called before and after starting the
75 // workers. << 86 // workers.
76 // For more details, please refer to : << 87 // For more details, please refer to :
77 // https://twiki.cern.ch/twiki/bin/view/Gean << 88 // https://twiki.cern.ch/twiki/bin/view/Geant4/Geant4MTForApplicationDevelopers
78 // << 89 //
79 // RunAction* runAction= new RunAction(); << 90 // RunAction* runAction= new RunAction();
80 // SetUserAction(runAction); << 91 // SetUserAction(runAction);
81 } 92 }
82 93
83 void ActionInitialization::Build() const 94 void ActionInitialization::Build() const
84 { 95 {
85 PrimaryGeneratorAction* primGenAction = new 96 PrimaryGeneratorAction* primGenAction = new PrimaryGeneratorAction;
86 SetUserAction(primGenAction); 97 SetUserAction(primGenAction);
87 98
88 // Set optional user action classes 99 // Set optional user action classes
89 SetUserAction(new RunAction()); 100 SetUserAction(new RunAction());
90 SetUserAction(new TrackingAction()); 101 SetUserAction(new TrackingAction());
91 SetUserAction(new SteppingAction()); 102 SetUserAction(new SteppingAction());
92 SetUserAction(new StackingAction()); 103 SetUserAction(new StackingAction());
93 104
94 // chemistry part 105 // chemistry part
95 if (G4DNAChemistryManager::IsActivated()) { << 106 if(G4DNAChemistryManager::IsActivated()){
96 G4Scheduler::Instance()->SetUserAction(new 107 G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
97 108
98 // Uncomment and set to stop chemistry sta 109 // Uncomment and set to stop chemistry stage after:
99 // ...given number of time steps 110 // ...given number of time steps
100 // G4Scheduler::Instance()->SetMaxNbSteps( << 111 //G4Scheduler::Instance()->SetMaxNbSteps(1000);
101 112
102 // ...OR reaching this time 113 // ...OR reaching this time
103 G4Scheduler::Instance()->SetEndTime(100 * << 114 G4Scheduler::Instance()->SetEndTime(100*nanosecond);
104 115
105 G4Scheduler::Instance()->SetVerbose(1); 116 G4Scheduler::Instance()->SetVerbose(1);
106 117
107 ITTrackingInteractivity* itInteractivity = 118 ITTrackingInteractivity* itInteractivity = new ITTrackingInteractivity();
108 itInteractivity->SetUserAction(new ITStepp 119 itInteractivity->SetUserAction(new ITSteppingAction);
109 itInteractivity->SetUserAction(new ITTrack 120 itInteractivity->SetUserAction(new ITTrackingAction);
110 G4Scheduler::Instance()->SetInteractivity( 121 G4Scheduler::Instance()->SetInteractivity(itInteractivity);
111 } 122 }
112 /* << 123 /*
113 // To output the pre-chemical stage << 124 // To output the pre-chemical stage
114 // << 125 //
115 G4String fileName ("output"); << 126 G4String fileName ("output");
116 << 127
117 if(G4RunManager::GetRunManager()->GetRunMa << 128 if(G4RunManager::GetRunManager()->GetRunManagerType() ==
118 G4RunManager::sequentialRM) << 129 G4RunManager::sequentialRM)
119 { << 130 {
120 // write initial situation at 1 picoseco << 131 // write initial situation at 1 picosecond
121 G4DNAChemistryManager::Instance()->Write << 132 G4DNAChemistryManager::Instance()->WriteInto(fileName + ".txt");
122 } << 133 }
123 else << 134 else
124 { << 135 {
125 G4int id = G4Threading::G4GetThreadId(); << 136 G4int id = G4Threading::G4GetThreadId();
126 << 137
127 G4String fileName_mt = fileName; << 138 G4String fileName_mt = fileName;
128 fileName_mt += G4UIcommand::ConvertToStr << 139 fileName_mt += G4UIcommand::ConvertToString(id);
129 fileName_mt += ".txt"; << 140 fileName_mt += ".txt";
130 << 141
131 G4cout << "chosen file name : " << fileN << 142 G4cout << "chosen file name : " << fileName_mt << G4endl;
132 << 143
133 G4DNAChemistryManager::Instance()->Write << 144 G4DNAChemistryManager::Instance()->WriteInto(fileName_mt);
134 } << 145 }
135 */ << 146 */
136 } << 147 }
137 148