Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/chem3/chem3.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem3/chem3.cc (Version 11.3.0) and /examples/extended/medical/dna/chem3/chem3.cc (Version 3.0)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // J. Comput. Phys. 274 (2014) 841-882            
 31 // The Geant4-DNA web site is available at htt    
 32 //                                                
 33 //                                                
 34 /// \file chem3.cc                                
 35 /// \brief Chem3 example                          
 36                                                   
 37 #include "ActionInitialization.hh"                
 38 #include "DetectorConstruction.hh"                
 39 #include "PhysicsList.hh"                         
 40                                                   
 41 #include "G4DNAChemistryManager.hh"               
 42 #include "G4RunManagerFactory.hh"                 
 43 #include "G4UIExecutive.hh"                       
 44 #include "G4UImanager.hh"                         
 45 #include "G4VisExecutive.hh"                      
 46 #ifdef G4UI_USE_QT                                
 47 #  include "G4UIQt.hh"                            
 48 #endif                                            
 49 #include "CommandLineParser.hh"                   
 50                                                   
 51 //....oooOO0OOooo........oooOO0OOooo........oo    
 52                                                   
 53 /*                                                
 54  * WARNING : Geant4 was initially not intended    
 55  * This code is delivered as a prototype          
 56  * We will be happy to hear from you, do not h    
 57  * communicate on the difficulties you may enc    
 58  * The user interface may change in the next r    
 59  * code has started                               
 60  */                                               
 61                                                   
 62 using namespace G4DNAPARSER;                      
 63 CommandLineParser* parser(0);                     
 64                                                   
 65 void Parse(int& argc, char** argv);               
 66                                                   
 67 int main(int argc, char** argv)                   
 68 {                                                 
 69   //////////                                      
 70   // Parse options given in commandLine           
 71   //                                              
 72   Parse(argc, argv);                              
 73                                                   
 74   //////////                                      
 75   // Construct the run manager according to wh    
 76   //                                              
 77   Command* commandLine(0);                        
 78                                                   
 79   auto* runManager = G4RunManagerFactory::Crea    
 80                                                   
 81   if ((commandLine = parser->GetCommandIfActiv    
 82     int nThreads = 2;                             
 83     const G4String& option = commandLine->GetO    
 84     if (option == "") {                           
 85       nThreads = G4UIcommand::ConvertToInt(com    
 86     }                                             
 87     else if (option == "NMAX") {                  
 88       nThreads = G4Threading::G4GetNumberOfCor    
 89     }                                             
 90     else {                                        
 91       nThreads = G4UIcommand::ConvertToInt(opt    
 92     }                                             
 93                                                   
 94     runManager->SetNumberOfThreads(nThreads);     
 95                                                   
 96     G4cout << "===== Chem3 is started with " <    
 97            << " threads =====" << G4endl;         
 98   }                                               
 99                                                   
100   //////////                                      
101   // Set mandatory user initialization classes    
102   //                                              
103   DetectorConstruction* detector = new Detecto    
104   runManager->SetUserInitialization(new Physic    
105   runManager->SetUserInitialization(detector);    
106   runManager->SetUserInitialization(new Action    
107                                                   
108   // Initialize G4 kernel                         
109   runManager->Initialize();                       
110                                                   
111   // Initialize visualization                     
112   G4VisManager* visManager = new G4VisExecutiv    
113   // G4VisExecutive can take a verbosity argum    
114   // G4VisManager* visManager = new G4VisExecu    
115   visManager->Initialize();                       
116                                                   
117   // Get the pointer to the User Interface man    
118   G4UImanager* UImanager = G4UImanager::GetUIp    
119   G4UIExecutive* ui(0);                           
120                                                   
121   // interactive mode : define UI session         
122   if ((commandLine = parser->GetCommandIfActiv    
123     ui = new G4UIExecutive(argc, argv, command    
124                                                   
125     if (parser->GetCommandIfActive("-novis") =    
126     // visualization is used by default           
127     {                                             
128       if ((commandLine = parser->GetCommandIfA    
129       // select a visualization driver if need    
130       {                                           
131         UImanager->ApplyCommand(G4String("/vis    
132       }                                           
133       else                                        
134       // by default OGL is used                   
135       {                                           
136         UImanager->ApplyCommand("/vis/open OGL    
137       }                                           
138       UImanager->ApplyCommand("/control/execut    
139     }                                             
140                                                   
141     if (ui->IsGUI()) UImanager->ApplyCommand("    
142   }                                               
143   else                                            
144   // to be use visualization file (= store the    
145   // an external file:                            
146   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML    
147   {                                               
148     if ((commandLine = parser->GetCommandIfAct    
149       UImanager->ApplyCommand(G4String("/vis/o    
150       UImanager->ApplyCommand("/control/execut    
151     }                                             
152   }                                               
153                                                   
154   if ((commandLine = parser->GetCommandIfActiv    
155     G4String command = "/control/execute ";       
156     UImanager->ApplyCommand(command + commandL    
157   }                                               
158   else {                                          
159     UImanager->ApplyCommand("/control/execute     
160   }                                               
161                                                   
162   if ((commandLine = parser->GetCommandIfActiv    
163 #ifdef G4UI_USE_QT                                
164     G4UIQt* UIQt = static_cast<G4UIQt*>(UImana    
165     if (UIQt) {                                   
166       UIQt->AddViewerTabFromFile("README", "RE    
167     }                                             
168 #endif                                            
169     ui->SessionStart();                           
170     delete ui;                                    
171   }                                               
172                                                   
173   // Job termination                              
174   // Free the store: user actions, physics_lis    
175   // owned and deleted by the run manager, so     
176   // in the main() program !                      
177                                                   
178   delete visManager;                              
179   delete runManager;                              
180                                                   
181   CommandLineParser::DeleteInstance();            
182                                                   
183   return 0;                                       
184 }                                                 
185                                                   
186 void Parse(int& argc, char** argv)                
187 {                                                 
188   //////////                                      
189   // Parse options given in commandLine           
190   //                                              
191   parser = CommandLineParser::GetParser();        
192                                                   
193   parser->AddCommand("-gui", Command::OptionNo    
194                      "Select geant4 UI or just    
195                                                   
196   parser->AddCommand("-mac", Command::WithOpti    
197                                                   
198   // You cann your own command, as for instanc    
199   //  parser->AddCommand("-seed",                 
200   //                     Command::WithOption,     
201   //                     "Give a seed value in    
202   // it is then up to you to manage this optio    
203                                                   
204   parser->AddCommand("-mt", Command::OptionNot    
205                      "Launch in MT mode if ava    
206                      " NOT RECOMMENDED WITH CH    
207                      "2");                        
208                                                   
209   parser->AddCommand("-chemOFF", Command::With    
210                                                   
211   parser->AddCommand("-vis", Command::WithOpti    
212                      "OGL 600x600-0+0");          
213                                                   
214   parser->AddCommand("-novis", Command::Withou    
215                                                   
216   //////////                                      
217   // If -h or --help is given in option : prin    
218   //                                              
219   if (parser->Parse(argc, argv) != 0)  // help    
220   {                                               
221     // if you are using ROOT, create a TApplic    
222     // to print the help from ROOT as well        
223     CommandLineParser::DeleteInstance();          
224     std::exit(0);                                 
225   }                                               
226                                                   
227   ///////////                                     
228   // Kill application if wrong argument in com    
229   //                                              
230   if (parser->CheckIfNotHandledOptionsExists(a    
231     // if you are using ROOT, you should initi    
232     // before this condition                      
233     abort();                                      
234   }                                               
235 }                                                 
236