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Geant4/examples/extended/medical/dna/chem2/src/TimeStepAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem2/src/TimeStepAction.cc (Version 11.3.0) and /examples/extended/medical/dna/chem2/src/TimeStepAction.cc (Version 10.7.p1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // J. Comput. Phys. 274 (2014) 841-882             30 // J. Comput. Phys. 274 (2014) 841-882
 31 // The Geant4-DNA web site is available at htt     31 // The Geant4-DNA web site is available at http://geant4-dna.org
 32 //                                                 32 //
 33 //                                                 33 //
 34 /// \file TimeStepAction.cc                        34 /// \file TimeStepAction.cc
 35 /// \brief Implementation of the TimeStepActio     35 /// \brief Implementation of the TimeStepAction class
 36                                                    36 
 37 #include "TimeStepAction.hh"                       37 #include "TimeStepAction.hh"
 38                                                << 
 39 #include "G4SystemOfUnits.hh"                  << 
 40 #include "G4UnitsTable.hh"                         38 #include "G4UnitsTable.hh"
 41 // #include "G4ITScheduler.hh"                 <<  39 #include "G4SystemOfUnits.hh"
 42 // #include "G4Molecule.hh"                    <<  40 //#include "G4ITScheduler.hh"
                                                   >>  41 //#include "G4Molecule.hh"
 43                                                    42 
 44 //....oooOO0OOooo........oooOO0OOooo........oo     43 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 45                                                    44 
 46 TimeStepAction::TimeStepAction() : G4UserTimeS <<  45 TimeStepAction::TimeStepAction() :
                                                   >>  46     G4UserTimeStepAction()
 47 {                                                  47 {
 48   /**                                              48   /**
 49    * Inform G4ITTimeStepper of the selected mi     49    * Inform G4ITTimeStepper of the selected minimum time steps
 50    * eg : from 1 picosecond to 10 picosecond,      50    * eg : from 1 picosecond to 10 picosecond, the minimum time
 51    * step that the TimeStepper can returned is     51    * step that the TimeStepper can returned is 0.1 picosecond.
 52    *                                               52    *
 53    * Case 1) If the rection model calculates a     53    * Case 1) If the rection model calculates a minimum reaction time
 54    * bigger than the user defined time step, t     54    * bigger than the user defined time step, the reaction model wins
 55    *                                               55    *
 56    * Case 2) If an interaction process with th     56    * Case 2) If an interaction process with the continuous medium
 57    * calculates a time step less than the sele     57    * calculates a time step less than the selected minimum time step,
 58    * the interaction process wins                  58    * the interaction process wins
 59    */                                              59    */
 60                                                    60 
 61   AddTimeStep(1 * picosecond, 0.1 * picosecond     61   AddTimeStep(1 * picosecond, 0.1 * picosecond);
 62   AddTimeStep(10 * picosecond, 1 * picosecond)     62   AddTimeStep(10 * picosecond, 1 * picosecond);
 63   AddTimeStep(100 * picosecond, 10 * picosecon     63   AddTimeStep(100 * picosecond, 10 * picosecond);
 64   AddTimeStep(1000 * picosecond, 100 * picosec     64   AddTimeStep(1000 * picosecond, 100 * picosecond);
 65   AddTimeStep(10000 * picosecond, 1000 * picos     65   AddTimeStep(10000 * picosecond, 1000 * picosecond);
 66 }                                                  66 }
 67                                                    67 
 68 //....oooOO0OOooo........oooOO0OOooo........oo     68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 69                                                    69 
 70 TimeStepAction::~TimeStepAction() {}           <<  70 TimeStepAction::~TimeStepAction()
                                                   >>  71 {
                                                   >>  72 }
 71                                                    73 
 72 //....oooOO0OOooo........oooOO0OOooo........oo     74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 73                                                    75 
 74 TimeStepAction::TimeStepAction(const TimeStepA <<  76 TimeStepAction::TimeStepAction(const TimeStepAction& other) :
                                                   >>  77     G4UserTimeStepAction(other)
                                                   >>  78 {
                                                   >>  79 }
 75                                                    80 
 76 //....oooOO0OOooo........oooOO0OOooo........oo     81 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 77 TimeStepAction& TimeStepAction::operator=(cons <<  82 TimeStepAction&
                                                   >>  83 TimeStepAction::operator=(const TimeStepAction& rhs)
 78 {                                                  84 {
 79   if (this == &rhs) return *this;  // handle s <<  85   if (this == &rhs) return *this; // handle self assignment
 80   // assignment operator                       <<  86   //assignment operator
 81   return *this;                                    87   return *this;
 82 }                                                  88 }
 83                                                    89 
 84 //....oooOO0OOooo........oooOO0OOooo........oo     90 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 85                                                    91 
 86 void TimeStepAction::StartProcessing()             92 void TimeStepAction::StartProcessing()
 87 {                                                  93 {
 88   // You want to know why the simulation stopp <<  94 // You want to know why the simulation stopped ?
 89   // G4ITScheduler::Instance()->WhyDoYouStop() <<  95 // G4ITScheduler::Instance()->WhyDoYouStop();
 90   // At the end of the simulation, information <<  96 // At the end of the simulation, information will be printed
 91   // It is better to place this command before <<  97 // It is better to place this command before the simulation starts
 92 }                                                  98 }
 93                                                    99 
 94 //....oooOO0OOooo........oooOO0OOooo........oo    100 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 95                                                   101 
 96 void TimeStepAction::UserPreTimeStepAction() { << 102 void TimeStepAction::UserPreTimeStepAction()
                                                   >> 103 {
                                                   >> 104 }
 97                                                   105 
 98 //....oooOO0OOooo........oooOO0OOooo........oo    106 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 99                                                   107 
100 void TimeStepAction::UserPostTimeStepAction()  << 108 void TimeStepAction::UserPostTimeStepAction()
                                                   >> 109 {
                                                   >> 110 }
101                                                   111 
102 //....oooOO0OOooo........oooOO0OOooo........oo    112 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
103                                                   113 
                                                   >> 114 
104 // Here you can retrieve information related t    115 // Here you can retrieve information related to reactions
105 void TimeStepAction::UserReactionAction(const  << 116 void
106                                         const  << 117 TimeStepAction::UserReactionAction(const G4Track& /*a*/,
                                                   >> 118                                    const G4Track& /*b*/,
                                                   >> 119                                    const std::vector<G4Track*>* /*products*/)
107 {                                                 120 {
                                                   >> 121 
108   // Example to display reactions with product    122   // Example to display reactions with product
109   // S. Incerti, H. Tran                          123   // S. Incerti, H. Tran
110   // 2019/01/24                                   124   // 2019/01/24
111                                                   125 
112   /*                                              126   /*
113   if (products)                                << 127   if (products) 
114   {                                            << 128   {  
115     G4cout << G4endl;                             129     G4cout << G4endl;
116     G4int nbProducts = products->size();          130     G4int nbProducts = products->size();
117     for (int i = 0 ; i < nbProducts ; i ++)       131     for (int i = 0 ; i < nbProducts ; i ++)
118     {                                             132     {
119       G4cout << "-> A = "                         133       G4cout << "-> A = "
120         << GetMolecule(&a)->GetName() << " (Tr    134         << GetMolecule(&a)->GetName() << " (TrackID=" << a.GetTrackID() << ")"
121         << " reacts with B = "                    135         << " reacts with B = "
122         << GetMolecule(&b)->GetName() << " (Tr    136         << GetMolecule(&b)->GetName() << " (TrackID=" << b.GetTrackID() << ")"
123         << " creating product " << i+1 << " ="    137         << " creating product " << i+1 << " ="
124         << GetMolecule((*products)[i])->GetNam    138         << GetMolecule((*products)[i])->GetName()
125         << G4endl ;                               139         << G4endl ;
126                                                   140 
127       G4cout                                   << 141       G4cout 
128       <<" A position: x(nm)="<<a.GetPosition()    142       <<" A position: x(nm)="<<a.GetPosition().getX()/nm
129       <<" y(nm)="<<a.GetPosition().getY()/nm      143       <<" y(nm)="<<a.GetPosition().getY()/nm
130       <<" z(nm)="<<a.GetPosition().getZ()/nm      144       <<" z(nm)="<<a.GetPosition().getZ()/nm
131       <<G4endl;                                   145       <<G4endl;
132                                                   146 
133       G4cout                                   << 147       G4cout 
134       <<" B position: x(nm)="<<b.GetPosition()    148       <<" B position: x(nm)="<<b.GetPosition().getX()/nm
135       <<" y(nm)="<<b.GetPosition().getY()/nm      149       <<" y(nm)="<<b.GetPosition().getY()/nm
136       <<" z(nm)="<<b.GetPosition().getZ()/nm      150       <<" z(nm)="<<b.GetPosition().getZ()/nm
137       <<G4endl;                                   151       <<G4endl;
138                                                   152 
139       G4cout                                   << 153       G4cout 
140       <<" Product " << i+1 << "position: x(nm)    154       <<" Product " << i+1 << "position: x(nm)="<<(*products)[i]->GetPosition().getX()/nm
141       <<" y(nm)="<<a.GetPosition().getY()/nm      155       <<" y(nm)="<<a.GetPosition().getY()/nm
142       <<" z(nm)="<<a.GetPosition().getZ()/nm      156       <<" z(nm)="<<a.GetPosition().getZ()/nm
143       <<G4endl;                                   157       <<G4endl;
144     }                                             158     }
145   }                                               159   }
146                                                   160 
147   else                                            161   else
148                                                   162 
149   {                                            << 163   {  
150      G4cout << G4endl;                            164      G4cout << G4endl;
151      G4cout << "-> A = "                          165      G4cout << "-> A = "
152         << GetMolecule(&a)->GetName() << " (Tr    166         << GetMolecule(&a)->GetName() << " (TrackID=" << a.GetTrackID() << ")"
153         << " reacts with B = "                    167         << " reacts with B = "
154         << GetMolecule(&b)->GetName() << " (Tr    168         << GetMolecule(&b)->GetName() << " (TrackID=" << b.GetTrackID() << ")"
155         << G4endl ;                               169         << G4endl ;
156                                                   170 
157       G4cout                                   << 171       G4cout 
158       <<" A position: x(nm)="<<a.GetPosition()    172       <<" A position: x(nm)="<<a.GetPosition().getX()/nm
159       <<" y(nm)="<<a.GetPosition().getY()/nm      173       <<" y(nm)="<<a.GetPosition().getY()/nm
160       <<" z(nm)="<<a.GetPosition().getZ()/nm      174       <<" z(nm)="<<a.GetPosition().getZ()/nm
161       <<G4endl;                                   175       <<G4endl;
162                                                   176 
163       G4cout                                   << 177       G4cout 
164       <<" B position: x(nm)="<<b.GetPosition()    178       <<" B position: x(nm)="<<b.GetPosition().getX()/nm
165       <<" y(nm)="<<b.GetPosition().getY()/nm      179       <<" y(nm)="<<b.GetPosition().getY()/nm
166       <<" z(nm)="<<b.GetPosition().getZ()/nm      180       <<" z(nm)="<<b.GetPosition().getZ()/nm
167       <<G4endl;                                   181       <<G4endl;
168                                                   182 
169   }                                               183   }
170   */                                              184   */
                                                   >> 185 
171 }                                                 186 }
172                                                   187 
173 void TimeStepAction::EndProcessing() {}        << 188 void TimeStepAction::EndProcessing()
                                                   >> 189 {
                                                   >> 190 }
174                                                   191