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Geant4/examples/extended/medical/dna/chem2/src/TimeStepAction.cc

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Differences between /examples/extended/medical/dna/chem2/src/TimeStepAction.cc (Version 11.3.0) and /examples/extended/medical/dna/chem2/src/TimeStepAction.cc (Version 10.1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // J. Comput. Phys. 274 (2014) 841-882             30 // J. Comput. Phys. 274 (2014) 841-882
 31 // The Geant4-DNA web site is available at htt     31 // The Geant4-DNA web site is available at http://geant4-dna.org
 32 //                                                 32 //
                                                   >>  33 // $Id$
 33 //                                                 34 //
 34 /// \file TimeStepAction.cc                        35 /// \file TimeStepAction.cc
 35 /// \brief Implementation of the TimeStepActio     36 /// \brief Implementation of the TimeStepAction class
 36                                                    37 
 37 #include "TimeStepAction.hh"                       38 #include "TimeStepAction.hh"
 38                                                << 
 39 #include "G4SystemOfUnits.hh"                  << 
 40 #include "G4UnitsTable.hh"                         39 #include "G4UnitsTable.hh"
 41 // #include "G4ITScheduler.hh"                 <<  40 #include "G4SystemOfUnits.hh"
 42 // #include "G4Molecule.hh"                    <<  41 //#include "G4ITScheduler.hh"
                                                   >>  42 //#include "G4Molecule.hh"
 43                                                    43 
 44 //....oooOO0OOooo........oooOO0OOooo........oo     44 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 45                                                    45 
 46 TimeStepAction::TimeStepAction() : G4UserTimeS <<  46 TimeStepAction::TimeStepAction() :
                                                   >>  47     G4UserTimeStepAction()
 47 {                                                  48 {
 48   /**                                              49   /**
 49    * Inform G4ITTimeStepper of the selected mi     50    * Inform G4ITTimeStepper of the selected minimum time steps
 50    * eg : from 1 picosecond to 10 picosecond,      51    * eg : from 1 picosecond to 10 picosecond, the minimum time
 51    * step that the TimeStepper can returned is     52    * step that the TimeStepper can returned is 0.1 picosecond.
 52    *                                               53    *
 53    * Case 1) If the rection model calculates a     54    * Case 1) If the rection model calculates a minimum reaction time
 54    * bigger than the user defined time step, t     55    * bigger than the user defined time step, the reaction model wins
 55    *                                               56    *
 56    * Case 2) If an interaction process with th     57    * Case 2) If an interaction process with the continuous medium
 57    * calculates a time step less than the sele     58    * calculates a time step less than the selected minimum time step,
 58    * the interaction process wins                  59    * the interaction process wins
 59    */                                              60    */
 60                                                    61 
 61   AddTimeStep(1 * picosecond, 0.1 * picosecond     62   AddTimeStep(1 * picosecond, 0.1 * picosecond);
 62   AddTimeStep(10 * picosecond, 1 * picosecond)     63   AddTimeStep(10 * picosecond, 1 * picosecond);
 63   AddTimeStep(100 * picosecond, 10 * picosecon <<  64   AddTimeStep(100 * picosecond, 3 * picosecond);
 64   AddTimeStep(1000 * picosecond, 100 * picosec <<  65   AddTimeStep(1000 * picosecond, 10 * picosecond);
 65   AddTimeStep(10000 * picosecond, 1000 * picos <<  66   AddTimeStep(10000 * picosecond, 100 * picosecond);
 66 }                                                  67 }
 67                                                    68 
 68 //....oooOO0OOooo........oooOO0OOooo........oo     69 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 69                                                    70 
 70 TimeStepAction::~TimeStepAction() {}           <<  71 TimeStepAction::~TimeStepAction()
                                                   >>  72 {
                                                   >>  73 }
 71                                                    74 
 72 //....oooOO0OOooo........oooOO0OOooo........oo     75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 73                                                    76 
 74 TimeStepAction::TimeStepAction(const TimeStepA <<  77 TimeStepAction::TimeStepAction(const TimeStepAction& other) :
                                                   >>  78     G4UserTimeStepAction(other)
                                                   >>  79 {
                                                   >>  80 }
 75                                                    81 
 76 //....oooOO0OOooo........oooOO0OOooo........oo     82 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 77 TimeStepAction& TimeStepAction::operator=(cons <<  83 TimeStepAction&
                                                   >>  84 TimeStepAction::operator=(const TimeStepAction& rhs)
 78 {                                                  85 {
 79   if (this == &rhs) return *this;  // handle s <<  86   if (this == &rhs) return *this; // handle self assignment
 80   // assignment operator                       <<  87   //assignment operator
 81   return *this;                                    88   return *this;
 82 }                                                  89 }
 83                                                    90 
 84 //....oooOO0OOooo........oooOO0OOooo........oo     91 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 85                                                    92 
 86 void TimeStepAction::StartProcessing()             93 void TimeStepAction::StartProcessing()
 87 {                                                  94 {
 88   // You want to know why the simulation stopp <<  95 // You want to know why the simulation stopped ?
 89   // G4ITScheduler::Instance()->WhyDoYouStop() <<  96 // G4ITScheduler::Instance()->WhyDoYouStop();
 90   // At the end of the simulation, information <<  97 // At the end of the simulation, information will be printed
 91   // It is better to place this command before <<  98 // It is better to place this command before the simulation starts
 92 }                                                  99 }
 93                                                   100 
 94 //....oooOO0OOooo........oooOO0OOooo........oo    101 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 95                                                   102 
 96 void TimeStepAction::UserPreTimeStepAction() { << 103 void TimeStepAction::UserPreTimeStepAction()
                                                   >> 104 {
                                                   >> 105 }
 97                                                   106 
 98 //....oooOO0OOooo........oooOO0OOooo........oo    107 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 99                                                   108 
100 void TimeStepAction::UserPostTimeStepAction()  << 109 void TimeStepAction::UserPostTimeStepAction()
                                                   >> 110 {
                                                   >> 111 }
101                                                   112 
102 //....oooOO0OOooo........oooOO0OOooo........oo    113 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
103                                                   114 
                                                   >> 115 
104 // Here you can retrieve information related t    116 // Here you can retrieve information related to reactions
105 void TimeStepAction::UserReactionAction(const  << 117 void
106                                         const  << 118 TimeStepAction::UserReactionAction(const G4Track&,
                                                   >> 119                                    const G4Track&,
                                                   >> 120                                    const std::vector<G4Track*>& /*products*/)
107 {                                                 121 {
108   // Example to display reactions with product << 
109   // S. Incerti, H. Tran                       << 
110   // 2019/01/24                                << 
111                                                << 
112   /*                                              122   /*
113   if (products)                                << 123    for (int i = 0 ; i < nbProducts ; i ++)
114   {                                            << 124    {
115     G4cout << G4endl;                          << 125    G4cout << "Product[" << i << "] : "
116     G4int nbProducts = products->size();       << 126    << GetMolecule(products[i])->GetName()
117     for (int i = 0 ; i < nbProducts ; i ++)    << 127    << G4endl ;
118     {                                          << 128    }
119       G4cout << "-> A = "                      << 129    */
120         << GetMolecule(&a)->GetName() << " (Tr << 
121         << " reacts with B = "                 << 
122         << GetMolecule(&b)->GetName() << " (Tr << 
123         << " creating product " << i+1 << " =" << 
124         << GetMolecule((*products)[i])->GetNam << 
125         << G4endl ;                            << 
126                                                << 
127       G4cout                                   << 
128       <<" A position: x(nm)="<<a.GetPosition() << 
129       <<" y(nm)="<<a.GetPosition().getY()/nm   << 
130       <<" z(nm)="<<a.GetPosition().getZ()/nm   << 
131       <<G4endl;                                << 
132                                                << 
133       G4cout                                   << 
134       <<" B position: x(nm)="<<b.GetPosition() << 
135       <<" y(nm)="<<b.GetPosition().getY()/nm   << 
136       <<" z(nm)="<<b.GetPosition().getZ()/nm   << 
137       <<G4endl;                                << 
138                                                << 
139       G4cout                                   << 
140       <<" Product " << i+1 << "position: x(nm) << 
141       <<" y(nm)="<<a.GetPosition().getY()/nm   << 
142       <<" z(nm)="<<a.GetPosition().getZ()/nm   << 
143       <<G4endl;                                << 
144     }                                          << 
145   }                                            << 
146                                                << 
147   else                                         << 
148                                                << 
149   {                                            << 
150      G4cout << G4endl;                         << 
151      G4cout << "-> A = "                       << 
152         << GetMolecule(&a)->GetName() << " (Tr << 
153         << " reacts with B = "                 << 
154         << GetMolecule(&b)->GetName() << " (Tr << 
155         << G4endl ;                            << 
156                                                << 
157       G4cout                                   << 
158       <<" A position: x(nm)="<<a.GetPosition() << 
159       <<" y(nm)="<<a.GetPosition().getY()/nm   << 
160       <<" z(nm)="<<a.GetPosition().getZ()/nm   << 
161       <<G4endl;                                << 
162                                                << 
163       G4cout                                   << 
164       <<" B position: x(nm)="<<b.GetPosition() << 
165       <<" y(nm)="<<b.GetPosition().getY()/nm   << 
166       <<" z(nm)="<<b.GetPosition().getZ()/nm   << 
167       <<G4endl;                                << 
168                                                << 
169   }                                            << 
170   */                                           << 
171 }                                                 130 }
172                                                   131 
173 void TimeStepAction::EndProcessing() {}        << 132 void TimeStepAction::EndProcessing()
                                                   >> 133 {
                                                   >> 134 }
174                                                   135