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Geant4/examples/extended/medical/dna/chem2/chem2.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem2/chem2.cc (Version 11.3.0) and /examples/extended/medical/dna/chem2/chem2.cc (Version 10.3.p2)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // J. Comput. Phys. 274 (2014) 841-882             30 // J. Comput. Phys. 274 (2014) 841-882
 31 // The Geant4-DNA web site is available at htt     31 // The Geant4-DNA web site is available at http://geant4-dna.org
 32 //                                                 32 //
                                                   >>  33 // $Id$
 33 //                                                 34 //
 34 /// \file chem2.cc                                 35 /// \file chem2.cc
 35 /// \brief Chem2 example                           36 /// \brief Chem2 example
 36                                                    37 
 37 #include "ActionInitialization.hh"             << 
 38 #include "CommandLineParser.hh"                << 
 39 #include "DetectorConstruction.hh"                 38 #include "DetectorConstruction.hh"
 40 #include "PhysicsList.hh"                          39 #include "PhysicsList.hh"
                                                   >>  40 #include "ActionInitialization.hh"
                                                   >>  41 
                                                   >>  42 #ifdef G4MULTITHREADED
                                                   >>  43 #include "G4MTRunManager.hh"
                                                   >>  44 #else
                                                   >>  45 #include "G4RunManager.hh"
                                                   >>  46 #endif
 41                                                    47 
 42 #include "G4DNAChemistryManager.hh"                48 #include "G4DNAChemistryManager.hh"
 43 #include "G4RunManagerFactory.hh"              << 
 44 #include "G4UIExecutive.hh"                    << 
 45 #include "G4UImanager.hh"                          49 #include "G4UImanager.hh"
                                                   >>  50 #include "G4UIExecutive.hh"
 46 #include "G4VisExecutive.hh"                       51 #include "G4VisExecutive.hh"
 47                                                    52 
                                                   >>  53 #include "CommandLineParser.hh"
                                                   >>  54 
 48 //....oooOO0OOooo........oooOO0OOooo........oo     55 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 49                                                    56 
 50 /*                                                 57 /*
 51  * WARNING : Geant4 was initially not intended     58  * WARNING : Geant4 was initially not intended for this kind of application
 52  * This code is delivered as a prototype           59  * This code is delivered as a prototype
 53  * We will be happy to hear from you, do not h     60  * We will be happy to hear from you, do not hesitate to send your feedback and
 54  * communicate on the difficulties you may enc     61  * communicate on the difficulties you may encounter
 55  * The user interface may change in the next r     62  * The user interface may change in the next releases since a reiteration of the
 56  * code has started                                63  * code has started
 57  */                                                64  */
 58                                                    65 
 59 using namespace G4DNAPARSER;                       66 using namespace G4DNAPARSER;
 60 CommandLineParser* parser(0);                      67 CommandLineParser* parser(0);
 61                                                    68 
 62 void Parse(int& argc, char** argv);                69 void Parse(int& argc, char** argv);
 63                                                    70 
 64 int main(int argc, char** argv)                    71 int main(int argc, char** argv)
 65 {                                                  72 {
 66   //////////                                       73   //////////
 67   // Parse options given in commandLine            74   // Parse options given in commandLine
 68   //                                               75   //
 69   Parse(argc, argv);                               76   Parse(argc, argv);
 70                                                    77 
 71   //////////                                       78   //////////
 72   // Construct the run manager according to wh     79   // Construct the run manager according to whether MT is activated or not
 73   //                                               80   //
 74   Command* commandLine(nullptr);               <<  81   Command* commandLine(0);
 75                                                    82 
 76   auto* runManager = G4RunManagerFactory::Crea <<  83 #ifdef G4MULTITHREADED
 77                                                <<  84   G4RunManager* runManager(0);
 78   if ((commandLine = parser->GetCommandIfActiv <<  85   if ((commandLine = parser->GetCommandIfActive("-mt")))
                                                   >>  86   {
                                                   >>  87     runManager = new G4MTRunManager;
 79     int nThreads = 2;                              88     int nThreads = 2;
 80     const G4String& option = commandLine->GetO     89     const G4String& option = commandLine->GetOption();
 81     if (option == "") {                        <<  90     if(option == "")
                                                   >>  91     {
 82       nThreads = G4UIcommand::ConvertToInt(com     92       nThreads = G4UIcommand::ConvertToInt(commandLine->GetDefaultOption());
 83     }                                              93     }
 84     else if (option == "NMAX") {               <<  94     else if(option == "NMAX")
 85       nThreads = G4Threading::G4GetNumberOfCor <<  95     {
                                                   >>  96      nThreads = G4Threading::G4GetNumberOfCores();
 86     }                                              97     }
 87     else {                                     <<  98     else
                                                   >>  99     {
 88       nThreads = G4UIcommand::ConvertToInt(opt    100       nThreads = G4UIcommand::ConvertToInt(option);
 89     }                                             101     }
 90                                                   102 
 91     runManager->SetNumberOfThreads(nThreads);  << 103     G4cout << "===== Chem2 is started with "
                                                   >> 104        << ((G4MTRunManager*) runManager)->GetNumberOfThreads()
                                                   >> 105        << " threads =====" << G4endl;
 92                                                   106 
 93     G4cout << "===== Chem2 is started with " < << 107     ((G4MTRunManager*) runManager)->SetNumberOfThreads(nThreads);
 94            << " threads =====" << G4endl;      << 108   }
                                                   >> 109   else
                                                   >> 110   {
                                                   >> 111     runManager = new G4RunManager();
 95   }                                               112   }
                                                   >> 113 #else
                                                   >> 114   G4RunManager* runManager = new G4RunManager();
                                                   >> 115 #endif
 96                                                   116 
 97   //////////                                      117   //////////
 98   // Set mandatory user initialization classes    118   // Set mandatory user initialization classes
 99   //                                              119   //
100   DetectorConstruction* detector = new Detecto << 120   DetectorConstruction* detector = new DetectorConstruction;
101   runManager->SetUserInitialization(new Physic    121   runManager->SetUserInitialization(new PhysicsList);
102   runManager->SetUserInitialization(detector);    122   runManager->SetUserInitialization(detector);
103   runManager->SetUserInitialization(new Action    123   runManager->SetUserInitialization(new ActionInitialization());
104                                                   124 
                                                   >> 125   // Initialize G4 kernel
                                                   >> 126   runManager->Initialize();
                                                   >> 127 
105   // Initialize visualization                     128   // Initialize visualization
106   G4VisManager* visManager = nullptr;          << 129   G4VisManager* visManager = new G4VisExecutive;
                                                   >> 130   // G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
                                                   >> 131   // G4VisManager* visManager = new G4VisExecutive("Quiet");
                                                   >> 132   visManager->Initialize();
107                                                   133 
108   // Get the pointer to the User Interface man    134   // Get the pointer to the User Interface manager
109   G4UImanager* UImanager = G4UImanager::GetUIp    135   G4UImanager* UImanager = G4UImanager::GetUIpointer();
110   G4UIExecutive* ui(nullptr);                  << 136   G4UIExecutive* ui(0);
111                                                   137 
112   // interactive mode : define UI session         138   // interactive mode : define UI session
113   if ((commandLine = parser->GetCommandIfActiv << 139   if ((commandLine = parser->GetCommandIfActive("-gui")))
114     visManager = new G4VisExecutive;           << 140   {
115     visManager->Initialize();                  << 141     ui = new G4UIExecutive(argc, argv, 
116                                                << 142                            commandLine->GetOption());
117     ui = new G4UIExecutive(argc, argv, command << 143 
118                                                << 144     if(parser->GetCommandIfActive("-novis") == 0)
119     if (parser->GetCommandIfActive("-novis") = << 145     // visualization is used by default
120       // visualization is used by default      << 146     {
121       if ((commandLine = parser->GetCommandIfA << 147       if((commandLine = parser->GetCommandIfActive("-vis")))
122         // select a visualization driver if ne << 148       // select a visualization driver if needed (e.g. HepFile)
123         UImanager->ApplyCommand(G4String("/vis << 149       {
                                                   >> 150         UImanager->ApplyCommand(G4String("/vis/open ")+
                                                   >> 151                                 commandLine->GetOption());
124       }                                           152       }
125       else {                                   << 153       else
126         // by default OGL is used              << 154       // by default OGL is used
                                                   >> 155       {
127         UImanager->ApplyCommand("/vis/open OGL    156         UImanager->ApplyCommand("/vis/open OGL 800x600-0+0");
128       }                                           157       }
129       UImanager->ApplyCommand("/control/execut    158       UImanager->ApplyCommand("/control/execute vis.mac");
130     }                                             159     }
131                                                   160 
132     if (ui->IsGUI()) {                         << 161     if(ui->IsGUI())
133       UImanager->ApplyCommand("/control/execut << 162        UImanager->ApplyCommand("/control/execute gui.mac");
134     }                                          << 
135   }                                               163   }
136   else if ((commandLine = parser->GetCommandIf << 164   else
137     // to be use visualization file (= store t << 165   // to be use visualization file (= store the visualization into
138     // an external file:                       << 166   // an external file:
139     // ASCIITree ;  DAWNFILE ; HepRepFile ; VR << 167   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
140     visManager = new G4VisExecutive;           << 168   {
141     visManager->Initialize();                  << 169     if ((commandLine = parser->GetCommandIfActive("-vis")))
142                                                << 170     {
143     ui = new G4UIExecutive(argc, argv, command << 171       UImanager->ApplyCommand(G4String("/vis/open ")+commandLine->GetOption());
144     UImanager->ApplyCommand(G4String("/vis/ope << 172       UImanager->ApplyCommand("/control/execute vis.mac");
145     UImanager->ApplyCommand("/control/execute  << 173     }
146   }                                               174   }
147                                                << 175  
148   if ((commandLine = parser->GetCommandIfActiv << 176   if ((commandLine = parser->GetCommandIfActive("-mac")))
                                                   >> 177   {
149     G4String command = "/control/execute ";       178     G4String command = "/control/execute ";
150     UImanager->ApplyCommand(command + commandL    179     UImanager->ApplyCommand(command + commandLine->GetOption());
151   }                                               180   }
152   else {                                       << 181   else
                                                   >> 182   {
153     UImanager->ApplyCommand("/control/execute     183     UImanager->ApplyCommand("/control/execute beam.in");
154   }                                               184   }
155                                                   185 
156   if (ui) {                                    << 186   if ((commandLine = parser->GetCommandIfActive("-gui")))
                                                   >> 187   {
157     ui->SessionStart();                           188     ui->SessionStart();
158     delete ui;                                    189     delete ui;
159   }                                               190   }
                                                   >> 191 
160   // Job termination                              192   // Job termination
161   // Free the store: user actions, physics_lis    193   // Free the store: user actions, physics_list and detector_description are
162   // owned and deleted by the run manager, so     194   // owned and deleted by the run manager, so they should not be deleted
163   // in the main() program !                      195   // in the main() program !
164                                                   196 
165   delete visManager;                              197   delete visManager;
166   delete runManager;                              198   delete runManager;
167                                                   199 
168   CommandLineParser::DeleteInstance();            200   CommandLineParser::DeleteInstance();
169                                                   201 
170   return 0;                                       202   return 0;
171 }                                                 203 }
172                                                   204 
173 void Parse(int& argc, char** argv)                205 void Parse(int& argc, char** argv)
174 {                                                 206 {
175   //////////                                      207   //////////
176   // Parse options given in commandLine           208   // Parse options given in commandLine
177   //                                              209   //
178   parser = CommandLineParser::GetParser();        210   parser = CommandLineParser::GetParser();
                                                   >> 211   
                                                   >> 212   parser->AddCommand("-gui", 
                                                   >> 213                      Command::OptionNotCompulsory,
                                                   >> 214                     "Select geant4 UI or just launch a geant4 terminal session",
                                                   >> 215                     "qt");
                                                   >> 216   
                                                   >> 217   parser->AddCommand("-mac", 
                                                   >> 218                      Command::WithOption, 
                                                   >> 219                      "Give a mac file to execute",
                                                   >> 220                      "macFile.mac");
                                                   >> 221 
                                                   >> 222 // You cann your own command, as for instance:
                                                   >> 223 //  parser->AddCommand("-seed", 
                                                   >> 224 //                     Command::WithOption,
                                                   >> 225 //                     "Give a seed value in argument to be tested", "seed");
                                                   >> 226 // it is then up to you to manage this option
179                                                   227 
180   parser->AddCommand("-gui", Command::OptionNo << 228 #ifdef G4MULTITHREADED
181                      "Select geant4 UI or just << 
182                                                << 
183   parser->AddCommand("-mac", Command::WithOpti << 
184                                                << 
185   // You cann your own command, as for instanc << 
186   //  parser->AddCommand("-seed",              << 
187   //                     Command::WithOption,  << 
188   //                     "Give a seed value in << 
189   // it is then up to you to manage this optio << 
190                                                << 
191   parser->AddCommand("-mt", Command::OptionNot    229   parser->AddCommand("-mt", Command::OptionNotCompulsory,
192                      "Launch in MT mode (event    230                      "Launch in MT mode (events computed in parallel,"
193                      " NOT RECOMMANDED WITH CH    231                      " NOT RECOMMANDED WITH CHEMISTRY)",
194                      "2");                        232                      "2");
                                                   >> 233 #endif
195                                                   234 
196   parser->AddCommand("-chemOFF", Command::With << 235   parser->AddCommand("-chemOFF", 
197                                                << 236                      Command::WithoutOption,
198   parser->AddCommand("-vis", Command::WithOpti << 237                      "Deactivate chemistry");
                                                   >> 238 
                                                   >> 239   parser->AddCommand("-vis",
                                                   >> 240                      Command::WithOption,
                                                   >> 241                      "Select a visualization driver",
199                      "OGL 600x600-0+0");          242                      "OGL 600x600-0+0");
200                                                   243 
201   parser->AddCommand("-novis", Command::Withou << 244   parser->AddCommand("-novis",
                                                   >> 245                      Command::WithoutOption,
                                                   >> 246                      "Deactivate visualization when using GUI");
202                                                   247 
203   //////////                                      248   //////////
204   // If -h or --help is given in option : prin    249   // If -h or --help is given in option : print help and exit
205   //                                              250   //
206   if (parser->Parse(argc, argv) != 0)  // help << 251   if (parser->Parse(argc, argv) != 0) // help is being printed
207   {                                               252   {
208     // if you are using ROOT, create a TApplic    253     // if you are using ROOT, create a TApplication in this condition in order
209     // to print the help from ROOT as well        254     // to print the help from ROOT as well
210     CommandLineParser::DeleteInstance();          255     CommandLineParser::DeleteInstance();
211     std::exit(0);                                 256     std::exit(0);
212   }                                               257   }
213                                                   258 
214   ///////////                                     259   ///////////
215   // Kill application if wrong argument in com    260   // Kill application if wrong argument in command line
216   //                                              261   //
217   if (parser->CheckIfNotHandledOptionsExists(a << 262   if (parser->CheckIfNotHandledOptionsExists(argc, argv))
                                                   >> 263   {
218     // if you are using ROOT, you should initi    264     // if you are using ROOT, you should initialise your TApplication
219     // before this condition                      265     // before this condition
220     abort();                                      266     abort();
221   }                                               267   }
222 }                                                 268 }
223                                                   269