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Geant4/examples/extended/medical/dna/chem2/chem2.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem2/chem2.cc (Version 11.3.0) and /examples/extended/medical/dna/chem2/chem2.cc (Version 10.0.p2)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // J. Comput. Phys. 274 (2014) 841-882            
 31 // The Geant4-DNA web site is available at htt    
 32 //                                                
 33 //                                                
 34 /// \file chem2.cc                                
 35 /// \brief Chem2 example                          
 36                                                   
 37 #include "ActionInitialization.hh"                
 38 #include "CommandLineParser.hh"                   
 39 #include "DetectorConstruction.hh"                
 40 #include "PhysicsList.hh"                         
 41                                                   
 42 #include "G4DNAChemistryManager.hh"               
 43 #include "G4RunManagerFactory.hh"                 
 44 #include "G4UIExecutive.hh"                       
 45 #include "G4UImanager.hh"                         
 46 #include "G4VisExecutive.hh"                      
 47                                                   
 48 //....oooOO0OOooo........oooOO0OOooo........oo    
 49                                                   
 50 /*                                                
 51  * WARNING : Geant4 was initially not intended    
 52  * This code is delivered as a prototype          
 53  * We will be happy to hear from you, do not h    
 54  * communicate on the difficulties you may enc    
 55  * The user interface may change in the next r    
 56  * code has started                               
 57  */                                               
 58                                                   
 59 using namespace G4DNAPARSER;                      
 60 CommandLineParser* parser(0);                     
 61                                                   
 62 void Parse(int& argc, char** argv);               
 63                                                   
 64 int main(int argc, char** argv)                   
 65 {                                                 
 66   //////////                                      
 67   // Parse options given in commandLine           
 68   //                                              
 69   Parse(argc, argv);                              
 70                                                   
 71   //////////                                      
 72   // Construct the run manager according to wh    
 73   //                                              
 74   Command* commandLine(nullptr);                  
 75                                                   
 76   auto* runManager = G4RunManagerFactory::Crea    
 77                                                   
 78   if ((commandLine = parser->GetCommandIfActiv    
 79     int nThreads = 2;                             
 80     const G4String& option = commandLine->GetO    
 81     if (option == "") {                           
 82       nThreads = G4UIcommand::ConvertToInt(com    
 83     }                                             
 84     else if (option == "NMAX") {                  
 85       nThreads = G4Threading::G4GetNumberOfCor    
 86     }                                             
 87     else {                                        
 88       nThreads = G4UIcommand::ConvertToInt(opt    
 89     }                                             
 90                                                   
 91     runManager->SetNumberOfThreads(nThreads);     
 92                                                   
 93     G4cout << "===== Chem2 is started with " <    
 94            << " threads =====" << G4endl;         
 95   }                                               
 96                                                   
 97   //////////                                      
 98   // Set mandatory user initialization classes    
 99   //                                              
100   DetectorConstruction* detector = new Detecto    
101   runManager->SetUserInitialization(new Physic    
102   runManager->SetUserInitialization(detector);    
103   runManager->SetUserInitialization(new Action    
104                                                   
105   // Initialize visualization                     
106   G4VisManager* visManager = nullptr;             
107                                                   
108   // Get the pointer to the User Interface man    
109   G4UImanager* UImanager = G4UImanager::GetUIp    
110   G4UIExecutive* ui(nullptr);                     
111                                                   
112   // interactive mode : define UI session         
113   if ((commandLine = parser->GetCommandIfActiv    
114     visManager = new G4VisExecutive;              
115     visManager->Initialize();                     
116                                                   
117     ui = new G4UIExecutive(argc, argv, command    
118                                                   
119     if (parser->GetCommandIfActive("-novis") =    
120       // visualization is used by default         
121       if ((commandLine = parser->GetCommandIfA    
122         // select a visualization driver if ne    
123         UImanager->ApplyCommand(G4String("/vis    
124       }                                           
125       else {                                      
126         // by default OGL is used                 
127         UImanager->ApplyCommand("/vis/open OGL    
128       }                                           
129       UImanager->ApplyCommand("/control/execut    
130     }                                             
131                                                   
132     if (ui->IsGUI()) {                            
133       UImanager->ApplyCommand("/control/execut    
134     }                                             
135   }                                               
136   else if ((commandLine = parser->GetCommandIf    
137     // to be use visualization file (= store t    
138     // an external file:                          
139     // ASCIITree ;  DAWNFILE ; HepRepFile ; VR    
140     visManager = new G4VisExecutive;              
141     visManager->Initialize();                     
142                                                   
143     ui = new G4UIExecutive(argc, argv, command    
144     UImanager->ApplyCommand(G4String("/vis/ope    
145     UImanager->ApplyCommand("/control/execute     
146   }                                               
147                                                   
148   if ((commandLine = parser->GetCommandIfActiv    
149     G4String command = "/control/execute ";       
150     UImanager->ApplyCommand(command + commandL    
151   }                                               
152   else {                                          
153     UImanager->ApplyCommand("/control/execute     
154   }                                               
155                                                   
156   if (ui) {                                       
157     ui->SessionStart();                           
158     delete ui;                                    
159   }                                               
160   // Job termination                              
161   // Free the store: user actions, physics_lis    
162   // owned and deleted by the run manager, so     
163   // in the main() program !                      
164                                                   
165   delete visManager;                              
166   delete runManager;                              
167                                                   
168   CommandLineParser::DeleteInstance();            
169                                                   
170   return 0;                                       
171 }                                                 
172                                                   
173 void Parse(int& argc, char** argv)                
174 {                                                 
175   //////////                                      
176   // Parse options given in commandLine           
177   //                                              
178   parser = CommandLineParser::GetParser();        
179                                                   
180   parser->AddCommand("-gui", Command::OptionNo    
181                      "Select geant4 UI or just    
182                                                   
183   parser->AddCommand("-mac", Command::WithOpti    
184                                                   
185   // You cann your own command, as for instanc    
186   //  parser->AddCommand("-seed",                 
187   //                     Command::WithOption,     
188   //                     "Give a seed value in    
189   // it is then up to you to manage this optio    
190                                                   
191   parser->AddCommand("-mt", Command::OptionNot    
192                      "Launch in MT mode (event    
193                      " NOT RECOMMANDED WITH CH    
194                      "2");                        
195                                                   
196   parser->AddCommand("-chemOFF", Command::With    
197                                                   
198   parser->AddCommand("-vis", Command::WithOpti    
199                      "OGL 600x600-0+0");          
200                                                   
201   parser->AddCommand("-novis", Command::Withou    
202                                                   
203   //////////                                      
204   // If -h or --help is given in option : prin    
205   //                                              
206   if (parser->Parse(argc, argv) != 0)  // help    
207   {                                               
208     // if you are using ROOT, create a TApplic    
209     // to print the help from ROOT as well        
210     CommandLineParser::DeleteInstance();          
211     std::exit(0);                                 
212   }                                               
213                                                   
214   ///////////                                     
215   // Kill application if wrong argument in com    
216   //                                              
217   if (parser->CheckIfNotHandledOptionsExists(a    
218     // if you are using ROOT, you should initi    
219     // before this condition                      
220     abort();                                      
221   }                                               
222 }                                                 
223