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Geant4/examples/extended/medical/dna/chem1/chem1.cc

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Diff markup

Differences between /examples/extended/medical/dna/chem1/chem1.cc (Version 11.3.0) and /examples/extended/medical/dna/chem1/chem1.cc (Version 5.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // J. Comput. Phys. 274 (2014) 841-882            
 31 // The Geant4-DNA web site is available at htt    
 32 //                                                
 33 //                                                
 34 /// \file chem1.cc                                
 35 /// \brief Chem1 example                          
 36                                                   
 37 #include "ActionInitialization.hh"                
 38 #include "CommandLineParser.hh"                   
 39 #include "DetectorConstruction.hh"                
 40 #include "PhysicsList.hh"                         
 41                                                   
 42 #include "G4DNAChemistryManager.hh"               
 43 #include "G4RunManagerFactory.hh"                 
 44 #include "G4UIExecutive.hh"                       
 45 #include "G4UImanager.hh"                         
 46 #include "G4VisExecutive.hh"                      
 47                                                   
 48 //....oooOO0OOooo........oooOO0OOooo........oo    
 49                                                   
 50 /*                                                
 51  * WARNING : Geant4 was initially not intended    
 52  * This code is delivered as a prototype          
 53  * We will be happy to hear from you, do not h    
 54  * communicate on the difficulties you may enc    
 55  * The user interface may change in the next r    
 56  * code has started                               
 57  */                                               
 58                                                   
 59 using namespace G4DNAPARSER;                      
 60 CommandLineParser* parser(0);                     
 61                                                   
 62 void Parse(int& argc, char** argv);               
 63                                                   
 64 int main(int argc, char** argv)                   
 65 {                                                 
 66   //////////                                      
 67   // Parse options given in commandLine           
 68   //                                              
 69   Parse(argc, argv);                              
 70                                                   
 71   //////////                                      
 72   // Construct the run manager according to wh    
 73   //                                              
 74   Command* commandLine(nullptr);                  
 75                                                   
 76   auto* runManager = G4RunManagerFactory::Crea    
 77   if ((commandLine = parser->GetCommandIfActiv    
 78     int nThreads = 2;                             
 79     if (commandLine->GetOption() == "NMAX") {     
 80       nThreads = G4Threading::G4GetNumberOfCor    
 81     }                                             
 82     else {                                        
 83       nThreads = G4UIcommand::ConvertToInt(com    
 84     }                                             
 85     runManager->SetNumberOfThreads(nThreads);     
 86     G4cout << "===== Chem1 is started with " <    
 87            << " threads =====" << G4endl;         
 88   }                                               
 89                                                   
 90   //////////                                      
 91   // Set mandatory user initialization classes    
 92   //                                              
 93   DetectorConstruction* detector = new Detecto    
 94   runManager->SetUserInitialization(new Physic    
 95   runManager->SetUserInitialization(detector);    
 96   runManager->SetUserInitialization(new Action    
 97                                                   
 98   // Initialize visualization                     
 99   G4VisManager* visManager = nullptr;             
100                                                   
101   // Get the pointer to the User Interface man    
102   G4UImanager* UImanager = G4UImanager::GetUIp    
103   G4UIExecutive* ui(nullptr);                     
104                                                   
105   // interactive mode : define UI session         
106   if ((commandLine = parser->GetCommandIfActiv    
107     visManager = new G4VisExecutive;              
108     visManager->Initialize();                     
109                                                   
110     ui = new G4UIExecutive(argc, argv, command    
111                                                   
112     if (parser->GetCommandIfActive("-novis") =    
113       // visualization is used by default         
114       if ((commandLine = parser->GetCommandIfA    
115         // select a visualization driver if ne    
116         UImanager->ApplyCommand(G4String("/vis    
117       }                                           
118       else {                                      
119         // by default OGL is used                 
120         UImanager->ApplyCommand("/vis/open OGL    
121       }                                           
122       UImanager->ApplyCommand("/control/execut    
123     }                                             
124                                                   
125     if (ui->IsGUI()) {                            
126       UImanager->ApplyCommand("/control/execut    
127     }                                             
128   }                                               
129   else if ((commandLine = parser->GetCommandIf    
130     // to be use visualization file (= store t    
131     // an external file:                          
132     // ASCIITree ;  DAWNFILE ; HepRepFile ; VR    
133     visManager = new G4VisExecutive;              
134     visManager->Initialize();                     
135                                                   
136     ui = new G4UIExecutive(argc, argv, command    
137     UImanager->ApplyCommand(G4String("/vis/ope    
138     UImanager->ApplyCommand("/control/execute     
139   }                                               
140                                                   
141   if ((commandLine = parser->GetCommandIfActiv    
142     G4String command = "/control/execute ";       
143     UImanager->ApplyCommand(command + commandL    
144   }                                               
145   else {                                          
146     UImanager->ApplyCommand("/control/execute     
147   }                                               
148                                                   
149   if (ui) {                                       
150     ui->SessionStart();                           
151     delete ui;                                    
152   }                                               
153                                                   
154   // Job termination                              
155   // Free the store: user actions, physics_lis    
156   // owned and deleted by the run manager, so     
157   // in the main() program !                      
158                                                   
159   delete visManager;                              
160   delete runManager;                              
161                                                   
162   CommandLineParser::DeleteInstance();            
163                                                   
164   return 0;                                       
165 }                                                 
166                                                   
167 void Parse(int& argc, char** argv)                
168 {                                                 
169   //////////                                      
170   // Parse options given in commandLine           
171   //                                              
172   parser = CommandLineParser::GetParser();        
173                                                   
174   parser->AddCommand("-gui", Command::OptionNo    
175                      "Select geant4 UI or just    
176                                                   
177   parser->AddCommand("-mac", Command::WithOpti    
178                                                   
179   // You cann your own command, as for instanc    
180   //  parser->AddCommand("-seed",                 
181   //                     Command::WithOption,     
182   //                     "Give a seed value in    
183   // it is then up to you to manage this optio    
184                                                   
185   parser->AddCommand("-mt", Command::WithOptio    
186                      "Launch in MT mode (event    
187                      " NOT RECOMMANDED WITH CH    
188                      "2");                        
189                                                   
190   parser->AddCommand("-chemOFF", Command::With    
191                                                   
192   parser->AddCommand("-vis", Command::WithOpti    
193                      "OGL 600x600-0+0");          
194                                                   
195   parser->AddCommand("-novis", Command::Withou    
196                                                   
197   //////////                                      
198   // If -h or --help is given in option : prin    
199   //                                              
200   if (parser->Parse(argc, argv) != 0)  // help    
201   {                                               
202     // if you are using ROOT, create a TApplic    
203     // to print the help from ROOT as well        
204     CommandLineParser::DeleteInstance();          
205     std::exit(0);                                 
206   }                                               
207                                                   
208   ///////////                                     
209   // Kill application if wrong argument in com    
210   //                                              
211   if (parser->CheckIfNotHandledOptionsExists(a    
212     // if you are using ROOT, you should initi    
213     // before this condition                      
214     abort();                                      
215   }                                               
216 }                                                 
217