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Geant4/examples/extended/medical/DICOM2/dicom2.cc

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Diff markup

Differences between /examples/extended/medical/DICOM2/dicom2.cc (Version 11.3.0) and /examples/extended/medical/DICOM2/dicom2.cc (Version 10.7)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
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  4 // *                                                4 // *                                                                  *
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 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 //                                                 26 //
 27 /// \file dicom2.cc                                27 /// \file dicom2.cc
 28 /// \brief Main program of the Dicom2 example      28 /// \brief Main program of the Dicom2 example
 29                                                    29 
 30 #include "Dicom2ActionInitialization.hh"       << 
 31 #include "DicomIntersectVolume.hh"             << 
 32 #include "DicomNestedParamDetectorConstruction << 
 33 #include "DicomPartialDetectorConstruction.hh" << 
 34 #include "DicomRegularDetectorConstruction.hh" << 
 35 #include "QBBC.hh"                             << 
 36 #include "QGSP_BIC.hh"                         << 
 37 #include "Shielding.hh"                        << 
 38                                                << 
 39 #include "G4GenericPhysicsList.hh"             << 
 40 #include "G4RunManagerFactory.hh"              << 
 41 #include "G4Timer.hh"                          << 
 42 #include "G4Types.hh"                              30 #include "G4Types.hh"
 43 #include "G4UIExecutive.hh"                    <<  31 #include "G4RunManagerFactory.hh"
 44 #include "G4UImanager.hh"                          32 #include "G4UImanager.hh"
 45 #include "G4VisExecutive.hh"                   <<  33 #include "G4GenericPhysicsList.hh"
 46 #include "G4tgrMessenger.hh"                       34 #include "G4tgrMessenger.hh"
 47 #include "Randomize.hh"                        <<  35 #include "G4VisExecutive.hh"
                                                   >>  36 #include "G4UIExecutive.hh"
                                                   >>  37 #include "G4Timer.hh"
 48 #include "globals.hh"                              38 #include "globals.hh"
                                                   >>  39 #include "Randomize.hh"
                                                   >>  40 #include "Shielding.hh"
                                                   >>  41 #include "QGSP_BIC.hh"
                                                   >>  42 #include "QBBC.hh"
                                                   >>  43 
                                                   >>  44 #include "DicomRegularDetectorConstruction.hh"
                                                   >>  45 #include "DicomNestedParamDetectorConstruction.hh"
                                                   >>  46 #include "DicomPartialDetectorConstruction.hh"
                                                   >>  47 #include "Dicom2ActionInitialization.hh"
                                                   >>  48 #include "DicomIntersectVolume.hh"
 49 #ifdef G4_DCMTK                                    49 #ifdef G4_DCMTK
 50 #  include "DicomFileMgr.hh"                   <<  50 #   include "DicomFileMgr.hh"
 51 #else                                              51 #else
 52 #  include "DicomHandler.hh"                   <<  52 #   include "DicomHandler.hh"
 53 #endif                                             53 #endif
 54                                                    54 
                                                   >>  55 
 55 //....oooOO0OOooo........oooOO0OOooo........oo     56 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 56                                                    57 
 57 int main(int argc, char** argv)                <<  58 int main(int argc,char** argv)
 58 {                                                  59 {
 59   // Detect interactive mode (if no arguments) <<  60     // Detect interactive mode (if no arguments) and define UI session
 60   //                                           <<  61     //
 61   G4UIExecutive* ui = 0;                       <<  62     G4UIExecutive* ui = 0;
 62   if (argc == 1) ui = new G4UIExecutive(argc,  <<  63     if (argc == 1)
 63                                                <<  64         ui = new G4UIExecutive(argc, argv);
 64   new G4tgrMessenger;                          <<  65 
 65   char* part = std::getenv("DICOM_PARTIAL_PARA <<  66     new G4tgrMessenger;
 66   G4bool bPartial = (part && G4String(part) == <<  67     char* part = std::getenv("DICOM_PARTIAL_PARAM");
 67                                                <<  68     G4bool bPartial = (part && G4String(part) == "1") ? true : false;
 68   CLHEP::HepRandom::setTheEngine(new CLHEP::Mi <<  69 
 69   CLHEP::HepRandom::setTheSeed(G4long(24534575 <<  70     CLHEP::HepRandom::setTheEngine(new CLHEP::MixMaxRng);
 70   G4long seeds[2];                             <<  71     CLHEP::HepRandom::setTheSeed(G4long(24534575684783));
 71   seeds[0] = G4long(534524575674523);          <<  72     G4long seeds[2];
 72   seeds[1] = G4long(526345623452457);          <<  73     seeds[0] = G4long(534524575674523);
 73   CLHEP::HepRandom::setTheSeeds(seeds);        <<  74     seeds[1] = G4long(526345623452457);
 74                                                <<  75     CLHEP::HepRandom::setTheSeeds(seeds);
 75   // Construct the default run manager         <<  76 
 76   G4int nthreads = G4GetEnv<G4int>("DICOM_NTHR <<  77     // Construct the default run manager
 77   auto* runManager = G4RunManagerFactory::Crea <<  78     G4int nthreads = G4GetEnv<G4int>("DICOM_NTHREADS", G4Thread::hardware_concurrency());
 78   runManager->SetNumberOfThreads(nthreads);    <<  79     auto* runManager = G4RunManagerFactory::CreateRunManager();
                                                   >>  80     runManager->SetNumberOfThreads(nthreads);
                                                   >>  81 
                                                   >>  82     G4cout << "\n\n\tDICOM2 running with "
                                                   >>  83            << runManager->GetNumberOfThreads()
                                                   >>  84            << " threads\n\n" << G4endl;
 79                                                    85 
 80   G4cout << "\n\n\tDICOM2 running with " << ru <<  86     DicomDetectorConstruction* theGeometry = 0;
 81          << G4endl;                            << 
 82                                                << 
 83   DicomDetectorConstruction* theGeometry = 0;  << 
 84                                                    87 
 85 #ifdef G4_DCMTK                                    88 #ifdef G4_DCMTK
 86   DicomFileMgr* theFileMgr = 0;                <<  89     DicomFileMgr* theFileMgr = 0;
 87 #else                                              90 #else
 88   DicomHandler* dcmHandler = 0;                <<  91     DicomHandler* dcmHandler = 0;
 89 #endif                                             92 #endif
 90                                                    93 
 91   if (!bPartial) {                             <<  94     if( !bPartial )
                                                   >>  95     {
 92 #ifdef G4_DCMTK                                    96 #ifdef G4_DCMTK
 93     G4String inpfile = "Data.dat";             <<  97         G4String inpfile = "Data.dat";
 94     char* env_inpfile = std::getenv("DICOM_INP <<  98         char* env_inpfile = std::getenv("DICOM_INPUT_FILE");
 95     if (env_inpfile) inpfile = env_inpfile;    <<  99         if(env_inpfile)
                                                   >> 100             inpfile = env_inpfile;
 96                                                   101 
 97     theFileMgr = DicomFileMgr::GetInstance();  << 102         theFileMgr = DicomFileMgr::GetInstance();
 98     theFileMgr->Convert(inpfile);              << 103         theFileMgr->Convert(inpfile);
 99 #else                                             104 #else
100     // Treatment of DICOM images before creati << 105         // Treatment of DICOM images before creating the G4runManager
101     dcmHandler = DicomHandler::Instance();     << 106         dcmHandler = DicomHandler::Instance();
102     dcmHandler->CheckFileFormat();             << 107         dcmHandler->CheckFileFormat();
103 #endif                                            108 #endif
104                                                   109 
105     // Initialisation of physics, geometry, pr << 110         // Initialisation of physics, geometry, primary particles ...
106     char* nest = std::getenv("DICOM_NESTED_PAR << 111         char* nest = std::getenv( "DICOM_NESTED_PARAM" );
107     if (nest && G4String(nest) == "1") {       << 112         if( nest && G4String(nest) == "1" ) {
108       theGeometry = new DicomNestedParamDetect << 113             theGeometry = new DicomNestedParamDetectorConstruction();
                                                   >> 114         } else {
                                                   >> 115             theGeometry = new DicomRegularDetectorConstruction();
                                                   >> 116         }
                                                   >> 117     } else {
                                                   >> 118         theGeometry = new DicomPartialDetectorConstruction();
                                                   >> 119     }
                                                   >> 120     runManager->SetUserInitialization(theGeometry);
                                                   >> 121 
                                                   >> 122     //    std::vector<G4String>* MyConstr = new std::vector<G4String>;
                                                   >> 123     //    MyConstr->push_back("G4EmStandardPhysics");
                                                   >> 124     //    G4VModularPhysicsList* phys = new G4GenericPhysicsList(MyConstr);
                                                   >> 125     G4VModularPhysicsList* phys = new Shielding();
                                                   >> 126     phys->SetDefaultCutValue(0.5*CLHEP::mm);
                                                   >> 127     runManager->SetUserInitialization(phys);
                                                   >> 128 
                                                   >> 129     // User action initialization
                                                   >> 130     runManager->SetUserInitialization(new Dicom2ActionInitialization());
                                                   >> 131 
                                                   >> 132     runManager->Initialize();
                                                   >> 133 
                                                   >> 134     new DicomIntersectVolume();
                                                   >> 135 
                                                   >> 136     // Initialize visualization
                                                   >> 137     //
                                                   >> 138     G4VisManager* visManager = new G4VisExecutive;
                                                   >> 139     // G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
                                                   >> 140     // G4VisManager* visManager = new G4VisExecutive("Quiet");
                                                   >> 141     visManager->Initialize();
                                                   >> 142 
                                                   >> 143     // Get the pointer to the User Interface manager
                                                   >> 144     G4UImanager* UImanager = G4UImanager::GetUIpointer();
                                                   >> 145 
                                                   >> 146     G4Timer t;
                                                   >> 147     t.Start();
                                                   >> 148 
                                                   >> 149     // Process macro or start UI session
                                                   >> 150     //
                                                   >> 151     if ( ! ui ) {
                                                   >> 152         // batch mode
                                                   >> 153         G4String command = "/control/execute ";
                                                   >> 154         G4String fileName = argv[1];
                                                   >> 155         UImanager->ApplyCommand(command+fileName);
109     }                                             156     }
110     else {                                        157     else {
111       theGeometry = new DicomRegularDetectorCo << 158         // interactive mode
                                                   >> 159         UImanager->ApplyCommand("/control/execute vis.mac");
                                                   >> 160         ui->SessionStart();
                                                   >> 161         delete ui;
112     }                                             162     }
113   }                                            << 
114   else {                                       << 
115     theGeometry = new DicomPartialDetectorCons << 
116   }                                            << 
117   runManager->SetUserInitialization(theGeometr << 
118                                                << 
119   //    std::vector<G4String>* MyConstr = new  << 
120   //    MyConstr->push_back("G4EmStandardPhysi << 
121   //    G4VModularPhysicsList* phys = new G4Ge << 
122   G4VModularPhysicsList* phys = new Shielding( << 
123   phys->SetDefaultCutValue(0.5 * CLHEP::mm);   << 
124   runManager->SetUserInitialization(phys);     << 
125                                                << 
126   // User action initialization                << 
127   runManager->SetUserInitialization(new Dicom2 << 
128                                                << 
129   runManager->Initialize();                    << 
130                                                << 
131   new DicomIntersectVolume();                  << 
132                                                << 
133   // Initialize visualization                  << 
134   //                                           << 
135   G4VisManager* visManager = new G4VisExecutiv << 
136   // G4VisExecutive can take a verbosity argum << 
137   // G4VisManager* visManager = new G4VisExecu << 
138   visManager->Initialize();                    << 
139                                                << 
140   // Get the pointer to the User Interface man << 
141   G4UImanager* UImanager = G4UImanager::GetUIp << 
142                                                << 
143   G4Timer t;                                   << 
144   t.Start();                                   << 
145                                                << 
146   // Process macro or start UI session         << 
147   //                                           << 
148   if (!ui) {                                   << 
149     // batch mode                              << 
150     G4String command = "/control/execute ";    << 
151     G4String fileName = argv[1];               << 
152     UImanager->ApplyCommand(command + fileName << 
153   }                                            << 
154   else {                                       << 
155     // interactive mode                        << 
156     UImanager->ApplyCommand("/control/execute  << 
157     ui->SessionStart();                        << 
158     delete ui;                                 << 
159   }                                            << 
160                                                << 
161   t.Stop();                                    << 
162                                                << 
163   // Job termination                           << 
164   // Free the store: user actions, physics_lis << 
165   // owned and deleted by the run manager, so  << 
166   // in the main() program !                   << 
167                                                   163 
168   delete visManager;                           << 164     t.Stop();
169   delete runManager;                           << 165 
                                                   >> 166     // Job termination
                                                   >> 167     // Free the store: user actions, physics_list and detector_description are
                                                   >> 168     // owned and deleted by the run manager, so they should not be deleted
                                                   >> 169     // in the main() program !
170                                                   170 
171   if (!bPartial) {                             << 171     delete visManager;
                                                   >> 172     delete runManager;
                                                   >> 173 
                                                   >> 174     if( !bPartial )
                                                   >> 175     {
172 #ifdef G4_DCMTK                                   176 #ifdef G4_DCMTK
173     delete theFileMgr;                         << 177         delete theFileMgr;
174 #endif                                            178 #endif
175   }                                            << 179     }
176                                                   180 
177   G4cout << "\n[" << argv[0] << "] Primary exe << 181     G4cout << "\n[" << argv[0] << "] Primary execution time: " << t << "\n"
                                                   >> 182            << G4endl;
178 }                                                 183 }
179                                                   184 
180 //....oooOO0OOooo........oooOO0OOooo........oo    185 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
181                                                   186