Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/DICOM/src/DicomRun.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/DICOM/src/DicomRun.cc (Version 11.3.0) and /examples/extended/medical/DICOM/src/DicomRun.cc (Version 9.4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 //                                                 26 //
 27 /// \file medical/DICOM/src/DicomRun.cc        <<  27 // $Id: DicomRun.cc,v 1.1 2008/11/27 21:55:27 arce Exp $
 28 /// \brief Implementation of the DicomRun clas <<  28 // GEANT4 tag $Name: geant4-09-02 $
                                                   >>  29 //
 29                                                    30 
 30 //============================================     31 //=====================================================================
 31 ///                                            <<  32 //
 32 ///  (Description)                             <<  33 //  (Description)
 33 ///    DicomRun Class is for accumulating scor <<  34 //    DicomRun Class is for accumulating scored quantities which is 
 34 ///  scored using G4MutiFunctionalDetector and <<  35 //  scored using G4MutiFunctionalDetector and G4VPrimitiveScorer.
 35 ///  Accumulation is done using G4THitsMap obj <<  36 //  Accumulation is done using G4THitsMap object.
 36 ///                                            <<  37 //
 37 ///    The constructor DicomRun(const std::vec <<  38 //    The constructor DicomRun(const std::vector<G4String> mfdName)
 38 ///  needs a vector filled with MultiFunctiona <<  39 //  needs a vector filled with MultiFunctionalDetector names which
 39 ///  was assigned at instantiation of MultiFun <<  40 //  was assigned at instantiation of MultiFunctionalDetector(MFD).
 40 ///  Then DicomRun constructor automatically s <<  41 //  Then DicomRun constructor automatically scans primitive scorers
 41 ///  in the MFD, and obtains collectionIDs of  <<  42 //  in the MFD, and obtains collectionIDs of all collections associated
 42 ///  to those primitive scorers. Futhermore, t <<  43 //  to those primitive scorers. Futhermore, the G4THitsMap objects 
 43 ///  for accumulating during a RUN are automat <<  44 //  for accumulating during a RUN are automatically created too.
 44 ///  (*) Collection Name is same as primitive  <<  45 //  (*) Collection Name is same as primitive scorer name.
 45 ///                                            <<  46 // 
 46 ///    The resultant information is kept insid <<  47 //    The resultant information is kept inside DicomRun objects as
 47 ///  data members.                             <<  48 //  data members.
 48 ///  std::vector<G4String> fCollName;          <<  49 //  std::vector<G4String> theCollName;            // Collection Name,
 49 ///  std::vector<G4int> fCollID;               <<  50 //  std::vector<G4int> theCollID;                 // Collection ID,
 50 ///  std::vector<G4THitsMap<G4double>*> fRunMa <<  51 //  std::vector<G4THitsMap<G4double>*> theRunMap; // HitsMap for RUN.
 51 ///                                            <<  52 //
 52 ///  The resualtant HitsMap objects are obtain <<  53 //  The resualtant HitsMap objects are obtain using access method,
 53 ///  GetHitsMap(..).                           <<  54 //  GetHitsMap(..).
 54 ///                                            <<  55 //
 55 //============================================     56 //=====================================================================
 56                                                    57 
 57 #include "DicomRun.hh"                             58 #include "DicomRun.hh"
                                                   >>  59 #include "G4SDManager.hh"
 58                                                    60 
 59 #include "G4MultiFunctionalDetector.hh"            61 #include "G4MultiFunctionalDetector.hh"
 60 #include "G4SDManager.hh"                      << 
 61 #include "G4VPrimitiveScorer.hh"                   62 #include "G4VPrimitiveScorer.hh"
 62                                                    63 
 63 //....oooOO0OOooo........oooOO0OOooo........oo << 
 64 //                                                 64 //
 65 //  Constructor.                               <<  65 //  Constructor. 
 66 DicomRun::DicomRun() : G4Run() {}              << 
 67                                                << 
 68 //....oooOO0OOooo........oooOO0OOooo........oo << 
 69 //                                             << 
 70 //  Constructor.                               << 
 71 //   (The vector of MultiFunctionalDetector na     66 //   (The vector of MultiFunctionalDetector name has to given.)
 72 DicomRun::DicomRun(const std::vector<G4String> <<  67 DicomRun::DicomRun(const std::vector<G4String> mfdName): G4Run()
 73 {                                              << 
 74   ConstructMFD(mfdName);                       << 
 75 }                                              << 
 76                                                << 
 77 //....oooOO0OOooo........oooOO0OOooo........oo << 
 78 //                                             << 
 79 // Destructor                                  << 
 80 //    clear all data members.                  << 
 81 DicomRun::~DicomRun()                          << 
 82 {                                              << 
 83   //--- Clear HitsMap for RUN                  << 
 84   size_t Nmap = fRunMap.size();                << 
 85   for (size_t i = 0; i < Nmap; ++i) {          << 
 86     if (fRunMap[i]) fRunMap[i]->clear();       << 
 87   }                                            << 
 88   fCollName.clear();                           << 
 89   fCollID.clear();                             << 
 90   fRunMap.clear();                             << 
 91 }                                              << 
 92                                                << 
 93 //....oooOO0OOooo........oooOO0OOooo........oo << 
 94 //                                             << 
 95 // Destructor                                  << 
 96 //    clear all data members.                  << 
 97 void DicomRun::ConstructMFD(const std::vector< << 
 98 {                                                  68 {
 99   G4SDManager* SDman = G4SDManager::GetSDMpoin     69   G4SDManager* SDman = G4SDManager::GetSDMpointer();
100   //==========================================     70   //=================================================
101   //  Initalize RunMaps for accumulation.          71   //  Initalize RunMaps for accumulation.
102   //  Get CollectionIDs for HitCollections.        72   //  Get CollectionIDs for HitCollections.
103   //==========================================     73   //=================================================
104   size_t Nmfd = mfdName.size();                <<  74   G4int Nmfd = mfdName.size();
105   for (size_t idet = 0; idet < Nmfd; ++idet)   <<  75   for ( G4int idet = 0; idet < Nmfd ; idet++){  // Loop for all MFD.
106   {                                            << 
107     G4String detName = mfdName[idet];              76     G4String detName = mfdName[idet];
108     //--- Seek and Obtain MFD objects from SDm     77     //--- Seek and Obtain MFD objects from SDmanager.
109     G4MultiFunctionalDetector* mfd =               78     G4MultiFunctionalDetector* mfd =
110       (G4MultiFunctionalDetector*)(SDman->Find     79       (G4MultiFunctionalDetector*)(SDman->FindSensitiveDetector(detName));
111     //                                             80     //
112     if (mfd) {                                 <<  81     if ( mfd ){
113       //--- Loop over the registered primitive <<  82   //--- Loop over the registered primitive scorers.
114       for (G4int icol = 0; icol < mfd->GetNumb <<  83   for (G4int icol = 0; icol < mfd->GetNumberOfPrimitives(); icol++){
115         // Get Primitive Scorer object.        <<  84       // Get Primitive Scorer object.
116         G4VPrimitiveScorer* scorer = mfd->GetP <<  85       G4VPrimitiveScorer* scorer=mfd->GetPrimitive(icol);
117         // collection name and collectionID fo <<  86       // collection name and collectionID for HitsCollection,
118         // where type of HitsCollection is G4T <<  87             // where type of HitsCollection is G4THitsMap in case of primitive scorer.
119         // of primitive scorer.                <<  88             // The collection name is given by <MFD name>/<Primitive Scorer name>.
120         // The collection name is given by <MF <<  89       G4String collectionName = scorer->GetName();
121         // Scorer name>.                       <<  90       G4String fullCollectionName = detName+"/"+collectionName;
122         G4String collectionName = scorer->GetN <<  91       G4int    collectionID = SDman->GetCollectionID(fullCollectionName);
123         G4String fullCollectionName = detName  <<  92       //
124         G4int collectionID = SDman->GetCollect <<  93       if ( collectionID >= 0 ){
125         //                                     <<  94     G4cout << "++ "<<fullCollectionName<< " id " << collectionID << G4endl;
126         if (collectionID >= 0) {               <<  95     // Store obtained HitsCollection information into data members.
127           G4cout << "++ " << fullCollectionNam <<  96     // And, creates new G4THitsMap for accumulating quantities during RUN.
128           // Store obtained HitsCollection inf <<  97     theCollName.push_back(fullCollectionName);
129           // And, creates new G4THitsMap for a <<  98     theCollID.push_back(collectionID);
130           fCollName.push_back(fullCollectionNa <<  99     theRunMap.push_back(new G4THitsMap<G4double>(detName,collectionName));
131           fCollID.push_back(collectionID);     << 100       }else{
132           fRunMap.push_back(new G4THitsMap<G4d << 101     G4cout << "** collection " << fullCollectionName << " not found. "<<G4endl;
133         }                                      << 102       }
134         else {                                 << 103   }
135           G4cout << "** collection " << fullCo << 
136         }                                      << 
137       }                                        << 
138     }                                             104     }
139   }                                               105   }
140 }                                                 106 }
141                                                   107 
142 //....oooOO0OOooo........oooOO0OOooo........oo << 108 //
                                                   >> 109 // Destructor
                                                   >> 110 //    clear all data members.
                                                   >> 111 DicomRun::~DicomRun()
                                                   >> 112 {
                                                   >> 113   //--- Clear HitsMap for RUN
                                                   >> 114   G4int Nmap = theRunMap.size();
                                                   >> 115   for ( G4int i = 0; i < Nmap; i++){
                                                   >> 116     if(theRunMap[i] ) theRunMap[i]->clear();
                                                   >> 117   }
                                                   >> 118   theCollName.clear();
                                                   >> 119   theCollID.clear();
                                                   >> 120   theRunMap.clear();
                                                   >> 121 }
                                                   >> 122 
143 //                                                123 //
144 //  RecordEvent is called at end of event.        124 //  RecordEvent is called at end of event.
145 //  For scoring purpose, the resultant quantit    125 //  For scoring purpose, the resultant quantity in a event,
146 //  is accumulated during a Run.                  126 //  is accumulated during a Run.
147 void DicomRun::RecordEvent(const G4Event* aEve    127 void DicomRun::RecordEvent(const G4Event* aEvent)
148 {                                                 128 {
149   // disable below because this is done in G4R << 129   numberOfEvent++;  // This is an original line.
150   // numberOfEvent++;  // This is an original  << 
151                                                   130 
152   // G4cout << "Dicom Run :: Recording event " << 
153   //<< "..." << G4endl;                        << 
154   //=============================                 131   //=============================
155   //  HitsCollection of This Event             << 132   // HitsCollection of This Event
156   //============================                  133   //============================
157   G4HCofThisEvent* HCE = aEvent->GetHCofThisEv    134   G4HCofThisEvent* HCE = aEvent->GetHCofThisEvent();
158   if (!HCE) return;                               135   if (!HCE) return;
159                                                   136 
160   //==========================================    137   //=======================================================
161   // Sum up HitsMap of this Event  into HitsMa    138   // Sum up HitsMap of this Event  into HitsMap of this RUN
162   //==========================================    139   //=======================================================
163   size_t Ncol = fCollID.size();                << 140   G4int Ncol = theCollID.size();
164   for (size_t i = 0; i < Ncol; ++i)  // Loop o << 141   for ( G4int i = 0; i < Ncol ; i++ ){  // Loop over HitsCollection
165   {                                            << 142     G4THitsMap<G4double>* EvtMap=0;
166     G4THitsMap<G4double>* EvtMap = nullptr;    << 143     if ( theCollID[i] >= 0 ){           // Collection is attached to HCE
167     if (fCollID[i] >= 0)  // Collection is att << 144       EvtMap = (G4THitsMap<G4double>*)(HCE->GetHC(theCollID[i]));
168     {                                          << 145     }else{
169       EvtMap = static_cast<G4THitsMap<G4double << 146       G4cout <<" Error EvtMap Not Found "<< i << G4endl;
170     }                                             147     }
171     else {                                     << 148     if ( EvtMap )  {
172       G4cout << " Error EvtMap Not Found " <<  << 
173     }                                          << 
174     if (EvtMap) {                              << 
175       //=== Sum up HitsMap of this event to Hi    149       //=== Sum up HitsMap of this event to HitsMap of RUN.===
176       *fRunMap[i] += *EvtMap;                  << 150       *theRunMap[i] += *EvtMap;
177       // G4cout << "Summing EvtMap into RunMap << 
178       //======================================    151       //======================================================
179     }  // else {                               << 152     }
180     // G4cout << "Null pointer to EvtMap at "  << 
181     // }                                       << 
182   }                                               153   }
183                                                   154 
184   G4Run::RecordEvent(aEvent);                  << 155   
185 }                                                 156 }
186                                                   157 
187 //....oooOO0OOooo........oooOO0OOooo........oo << 
188 // Merge hits map from threads                 << 
189 void DicomRun::Merge(const G4Run* aRun)        << 
190 {                                              << 
191   const DicomRun* localRun = static_cast<const << 
192   Copy(fCollName, localRun->fCollName);        << 
193   Copy(fCollID, localRun->fCollID);            << 
194   size_t ncopies = Copy(fRunMap, localRun->fRu << 
195   // copy function returns the fRunMap size if << 
196   // so this loop isn't executed the first tim << 
197   for (size_t i = ncopies; i < fRunMap.size(); << 
198     *fRunMap[i] += *localRun->fRunMap[i];      << 
199   }                                            << 
200   G4Run::Merge(aRun);                          << 
201 }                                              << 
202                                                << 
203 //....oooOO0OOooo........oooOO0OOooo........oo << 
204 //============================================    158 //=================================================================
205 //  Access method for HitsMap of the RUN          159 //  Access method for HitsMap of the RUN
206 //                                                160 //
207 //-----                                           161 //-----
208 // Access HitsMap.                                162 // Access HitsMap.
209 //  By  MultiFunctionalDetector name and Colle    163 //  By  MultiFunctionalDetector name and Collection Name.
210 G4THitsMap<G4double>* DicomRun::GetHitsMap(con << 164 G4THitsMap<G4double>* DicomRun::GetHitsMap(const G4String& detName,
211 {                                              << 165            const G4String& colName){
212   G4String fullName = detName + "/" + colName; << 166     G4String fullName = detName+"/"+colName;
213   return GetHitsMap(fullName);                 << 167     return GetHitsMap(fullName);
214 }                                                 168 }
215                                                   169 
216 //....oooOO0OOooo........oooOO0OOooo........oo << 170 //-----
217 // Access HitsMap.                                171 // Access HitsMap.
218 //  By full description of collection name, th    172 //  By full description of collection name, that is
219 //    <MultiFunctional Detector Name>/<Primiti    173 //    <MultiFunctional Detector Name>/<Primitive Scorer Name>
220 G4THitsMap<G4double>* DicomRun::GetHitsMap(con << 174 G4THitsMap<G4double>* DicomRun::GetHitsMap(const G4String& fullName){
221 {                                              << 175     G4int Ncol = theCollName.size();
222   // G4THitsMap<G4double>* hitsmap = 0;        << 176     for ( G4int i = 0; i < Ncol; i++){
223                                                << 177   if ( theCollName[i] == fullName ){
224   size_t Ncol = fCollName.size();              << 178       return theRunMap[i];
225   for (size_t i = 0; i < Ncol; ++i) {          << 179   }
226     if (fCollName[i] == fullName) {            << 
227       return fRunMap[i];                       << 
228       // if(hitsmap) { *hitsmap += *fRunMap[i] << 
229       // if(!hitsmap) { hitsmap = fRunMap[i];  << 
230     }                                             180     }
231   }                                            << 181     return NULL;
232                                                << 
233   G4Exception("DicomRun", fullName.c_str(), Ju << 
234               "GetHitsMap failed to locate the << 
235   return nullptr;                              << 
236 }                                                 182 }
                                                   >> 183 
237                                                   184