| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // 26 //
27 /// \file medical/DICOM/src/DicomPhantomZSlice 27 /// \file medical/DICOM/src/DicomPhantomZSliceMerged.cc
28 /// \brief Implementation of the DicomPhantomZ 28 /// \brief Implementation of the DicomPhantomZSliceMerged class
29 // 29 //
30 // 30 //
31 // The code was written by : 31 // The code was written by :
32 // * Jonathan Madsen : jonathan.madsen@ce 32 // * Jonathan Madsen : jonathan.madsen@cern.ch (12/18/2012)
33 // 33 //
34 // Texas A&M University 34 // Texas A&M University
35 // 3133 TAMU, Zachry Building 35 // 3133 TAMU, Zachry Building
36 // College Station, TX 77843, USA 36 // College Station, TX 77843, USA
37 // 37 //
38 //******************************************** 38 //*******************************************************
39 39
40 #include "DicomPhantomZSliceMerged.hh" 40 #include "DicomPhantomZSliceMerged.hh"
41 <<
42 #include "G4SystemOfUnits.hh" <<
43 #include "G4UnitsTable.hh" 41 #include "G4UnitsTable.hh"
>> 42 #include "G4SystemOfUnits.hh"
44 43
45 //....oooOO0OOooo........oooOO0OOooo........oo 44 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
46 45
47 DicomPhantomZSliceMerged::DicomPhantomZSliceMe << 46 DicomPhantomZSliceMerged::DicomPhantomZSliceMerged()
>> 47 {
>> 48
>> 49 }
48 50
49 //....oooOO0OOooo........oooOO0OOooo........oo 51 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
50 52
51 DicomPhantomZSliceMerged::~DicomPhantomZSliceM 53 DicomPhantomZSliceMerged::~DicomPhantomZSliceMerged()
52 { 54 {
53 fSlices.clear(); << 55 fSlices.clear();
54 } 56 }
55 57
56 //....oooOO0OOooo........oooOO0OOooo........oo 58 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
57 59
58 void DicomPhantomZSliceMerged::CheckSlices() 60 void DicomPhantomZSliceMerged::CheckSlices()
59 { 61 {
60 G4cout << "\nDicomPhantomZSliceMerged::Check << 62 G4cout << "\nDicomPhantomZSliceMerged::Checking "
61 << 63 << fSlices.size() << " fSlices..." << G4endl;
>> 64
62 G4bool uniformSliceThickness = true; 65 G4bool uniformSliceThickness = true;
63 << 66
64 if (fSlices.size() > 1) { << 67 if(fSlices.size() > 1) {
65 if (fSlices.size() == 2) { << 68 if(fSlices.size() == 2) {
66 DicomPhantomZSliceHeader* one = fSlices. 69 DicomPhantomZSliceHeader* one = fSlices.begin()->second;
67 DicomPhantomZSliceHeader* two = fSlices. 70 DicomPhantomZSliceHeader* two = fSlices.end()->second;
68 << 71
69 G4double real_distance = (two->GetSliceL << 72 G4double real_distance = (two->GetSliceLocation()-one->GetSliceLocation())/2.;
70 << 73
71 if (one->GetMaxZ() != two->GetMinZ()) { << 74 if(one->GetMaxZ() != two->GetMinZ()) {
72 one->SetMaxZ(one->GetSliceLocation() + << 75 one->SetMaxZ(one->GetSliceLocation()+real_distance);
73 two->SetMinZ(two->GetSliceLocation() - << 76 two->SetMinZ(two->GetSliceLocation()-real_distance);
74 // one->SetMinZ(one->GetSliceLocation( << 77 //one->SetMinZ(one->GetSliceLocation()-real_distance);
75 // two->SetMaxZ(two->GetSliceLocation( << 78 //two->SetMaxZ(two->GetSliceLocation()+real_distance);
76 if (uniformSliceThickness) { << 79 if(uniformSliceThickness) {
77 one->SetMinZ(one->GetSliceLocation() << 80 one->SetMinZ(one->GetSliceLocation()-real_distance);
78 two->SetMaxZ(two->GetSliceLocation() << 81 two->SetMaxZ(two->GetSliceLocation()+real_distance);
79 } 82 }
80 } 83 }
81 } << 84 } else {
82 else { <<
83 auto ite0 = fSlices.begin(); 85 auto ite0 = fSlices.begin();
84 auto ite1 = fSlices.begin(); 86 auto ite1 = fSlices.begin();
85 auto ite2 = fSlices.begin(); 87 auto ite2 = fSlices.begin();
86 ++ite1; 88 ++ite1;
87 ++ite2; << 89 ++ite2; ++ite2;
88 ++ite2; << 90
89 << 91 for(; ite2 != fSlices.end(); ++ite0, ++ite1, ++ite2)
90 for (; ite2 != fSlices.end(); ++ite0, ++ << 92 {
91 DicomPhantomZSliceHeader* prev = ite0- 93 DicomPhantomZSliceHeader* prev = ite0->second;
92 DicomPhantomZSliceHeader* slice = ite1 94 DicomPhantomZSliceHeader* slice = ite1->second;
93 DicomPhantomZSliceHeader* next = ite2- 95 DicomPhantomZSliceHeader* next = ite2->second;
94 G4double real_max_distance = (next->Ge << 96 G4double real_max_distance = (next->GetSliceLocation() -
95 G4double real_min_distance = (slice->G << 97 slice->GetSliceLocation())/2.;
>> 98 G4double real_min_distance = (slice->GetSliceLocation() -
>> 99 prev->GetSliceLocation())/2.;
96 G4double real_distance = real_max_dist 100 G4double real_distance = real_max_distance + real_min_distance;
97 G4double stated_distance = slice->GetM << 101 G4double stated_distance = slice->GetMaxZ()-slice->GetMinZ();
98 if (real_distance != stated_distance) << 102 if(real_distance != stated_distance) {
99 uintmax_t sliceNum = std::distance(f << 103 uintmax_t sliceNum = std::distance(fSlices.begin(),ite1);
100 G4cout << "\tDicomPhantomZSliceMerge 104 G4cout << "\tDicomPhantomZSliceMerged::CheckSlices - \
101 Slice Distance Error in sl << 105 Slice Distance Error in slice [" << sliceNum
102 << sliceNum << "]: Real Dista << 106 << "]: Real Distance = "
103 << " mm, Stated Distance = " << 107 << real_distance/mm
104 slice->SetMinZ(slice->GetSliceLocati << 108 << " mm, Stated Distance = " << stated_distance/mm << G4endl;
105 slice->SetMaxZ(slice->GetSliceLocati << 109 slice->SetMinZ(slice->GetSliceLocation()-real_min_distance);
106 << 110 slice->SetMaxZ(slice->GetSliceLocation()+real_max_distance);
107 if (ite0 == fSlices.begin()) { << 111
>> 112 if(ite0 == fSlices.begin()) {
108 prev->SetMaxZ(slice->GetMinZ()); 113 prev->SetMaxZ(slice->GetMinZ());
109 // Using below would make all slic 114 // Using below would make all slice same thickness
110 // prev->SetMinZ(prev->GetSliceLoc << 115 //prev->SetMinZ(prev->GetSliceLocation()-real_min_distance);
111 if (uniformSliceThickness) { << 116 if(uniformSliceThickness) {
112 prev->SetMinZ(prev->GetSliceLoca << 117 prev->SetMinZ(prev->GetSliceLocation()-real_min_distance); }
113 } << 118
114 } 119 }
115 if (static_cast<unsigned int>(std::d << 120 if(static_cast<unsigned int>(std::distance(fSlices.begin(),ite2)+1)==
116 { << 121 fSlices.size()) {
117 next->SetMinZ(slice->GetMaxZ()); 122 next->SetMinZ(slice->GetMaxZ());
118 // Using below would make all slic 123 // Using below would make all slice same thickness
119 // next->SetMaxZ(next->GetSliceLoc << 124 //next->SetMaxZ(next->GetSliceLocation()+real_max_distance);
120 if (uniformSliceThickness) { << 125 if(uniformSliceThickness) {
121 next->SetMaxZ(next->GetSliceLoca << 126 next->SetMaxZ(next->GetSliceLocation()+real_max_distance); }
122 } <<
123 } 127 }
124 } 128 }
125 } 129 }
126 } 130 }
127 } 131 }
128 G4cout << G4endl; 132 G4cout << G4endl;
129 << 133
130 for (auto ite = fSlices.cbegin(); ite != fSl << 134 for(auto ite = fSlices.cbegin(); ite != fSlices.cend(); ++ite) {
131 ite->second->DumpToFile(); 135 ite->second->DumpToFile();
132 } 136 }
>> 137
133 } 138 }
134 //....oooOO0OOooo........oooOO0OOooo........oo 139 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
135 140