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25 // 25 //
26 // Previous authors: G. Guerrieri, S. Guatelli << 26 // Authors: S. Guatelli and M. G. Pia, INFN Genova, Italy
27 // Authors (since 2007): S. Guatelli, Universi << 27 //
>> 28 // Based on code developed by the undergraduate student G. Guerrieri
>> 29 // Note: this is a preliminary beta-version of the code; an improved
>> 30 // version will be distributed in the next Geant4 public release, compliant
>> 31 // with the design in a forthcoming publication, and subject to a
>> 32 // design and code review.
28 // 33 //
29 34
30 #include "G4HumanPhantomRunAction.hh" 35 #include "G4HumanPhantomRunAction.hh"
31 #include "G4HumanPhantomAnalysisManager.hh" << 36 #include "G4HumanPhantomAnalysis.hh"
32 #include "G4SystemOfUnits.hh" 37 #include "G4SystemOfUnits.hh"
33 #include "G4UnitsTable.hh" 38 #include "G4UnitsTable.hh"
34 #include "G4ios.hh" 39 #include "G4ios.hh"
35 #include "G4Run.hh" 40 #include "G4Run.hh"
36 41
37 G4HumanPhantomRunAction::G4HumanPhantomRunActi << 42 G4HumanPhantomRunAction::G4HumanPhantomRunAction()
38 { } << 43 {
>> 44 // Create analysis manager
>> 45 G4AnalysisManager::Instance();
>> 46 }
39 47
40 G4HumanPhantomRunAction::~G4HumanPhantomRunAct 48 G4HumanPhantomRunAction::~G4HumanPhantomRunAction()
41 {} << 49 {
>> 50 delete G4AnalysisManager::Instance();
>> 51 }
42 52
43 void G4HumanPhantomRunAction::BeginOfRunAction 53 void G4HumanPhantomRunAction::BeginOfRunAction(const G4Run* aRun)
44 { 54 {
45 G4int run_number = aRun->GetRunID(); << 55 G4int run_number = aRun->GetRunID();
46 G4cout << "### Run " << run_number << " start << 56 G4cout << "### Run " << run_number << " start." << G4endl;
47 fEnergyTotal["logicalHead"]=0.; <<
48 fEnergyTotal["logicalTrunk"]=0.; <<
49 fEnergyTotal["logicalLeftLeg"]=0.; <<
50 fEnergyTotal["logicalRightLeg"]=0.; <<
51 fEnergyTotal["logicalSkull"]=0.; <<
52 fEnergyTotal["logicalLeftArmBone"]=0.; <<
53 fEnergyTotal["logicalRightArmBone"]=0.; <<
54 fEnergyTotal["logicalUpperSpine"]=0.; <<
55 fEnergyTotal["logicalMiddleLowerSpine"]=0.; <<
56 fEnergyTotal["logicalPelvis"]=0.; <<
57 fEnergyTotal["logicalRibCage"]=0.; <<
58 fEnergyTotal["logicalLeftClavicle"]=0.; <<
59 fEnergyTotal["logicalRightClavicle"]=0.; <<
60 fEnergyTotal["logicalLeftLegBone"]=0.; <<
61 fEnergyTotal["logicalRightLegBone"]=0.; <<
62 fEnergyTotal["logicalLeftScapula"]=0.; <<
63 fEnergyTotal["logicalRightScapula"]=0.; <<
64 fEnergyTotal["logicalHeart"]=0.; <<
65 fEnergyTotal["logicalThyroid"]=0.; <<
66 fEnergyTotal["logicalThymus"]=0.; <<
67 fEnergyTotal["logicalMaleGenitalia"]=0.; <<
68 fEnergyTotal["logicalBrain"]=0.; <<
69 fEnergyTotal["logicalStomach"]=0.; <<
70 fEnergyTotal["logicalUpperLargeIntestine"]=0. <<
71 fEnergyTotal["logicalLowerLargeIntestine"]=0. <<
72 fEnergyTotal["logicalSmallIntestine"]=0; <<
73 fEnergyTotal["logicalSpleen"]=0.; <<
74 fEnergyTotal["logicalPancreas"]=0.; <<
75 fEnergyTotal["logicalLeftKidney"]=0.; <<
76 fEnergyTotal["logicalRightKidney"]=0.; <<
77 fEnergyTotal["logicalUrinaryBladder"]=0.; <<
78 fEnergyTotal["logicalUterus"]=0.; <<
79 fEnergyTotal["logicalLeftLung"]=0.; <<
80 fEnergyTotal["logicalRightLung"]=0.; <<
81 fEnergyTotal["logicalLeftOvary"]=0.; <<
82 fEnergyTotal["logicalRightOvary"]=0.; <<
83 fEnergyTotal["logicalLeftTeste"]=0; <<
84 fEnergyTotal["logicalRightTeste"]=0; <<
85 fEnergyTotal["logicalLeftBreast"]=0.; <<
86 fEnergyTotal["logicalRightBreast"]=0.; <<
87 fEnergyTotal["logicalLeftAdrenal"]=0.; <<
88 fEnergyTotal["logicalRightAdrenal"]=0.; <<
89 57
90 // Create ROOT file, histograms and ntuple << 58 energyTotal["logicalHead"]=0.;
91 fAnalysisMan -> book(); << 59 energyTotal["logicalTrunk"]=0.;
>> 60 energyTotal["logicalLeftLeg"]=0.;
>> 61 energyTotal["logicalRightLeg"]=0.;
>> 62 energyTotal["logicalBrain"]=0.;
>> 63 energyTotal["logicalLeftArmBone"]=0.;
>> 64 energyTotal["logicalRightArmBone"]=0.;
>> 65 energyTotal["logicalSkull"]=0.;
>> 66 energyTotal["logicalUpperSpine"]=0.;
>> 67 energyTotal["logicalMiddleLowerSpine"]=0.;
>> 68 energyTotal["logicalPelvis"]=0.;
>> 69 energyTotal["logicalStomach"]=0.;
>> 70 energyTotal["logicalUpperLargeIntestine"]=0.;
>> 71 energyTotal["logicalLowerLargeIntestine"]=0.;
>> 72 energyTotal["logicalRibCage"]=0.;
>> 73 energyTotal["logicalSpleen"]=0.;
>> 74 energyTotal["logicalPancreas"]=0.;
>> 75 energyTotal["logicalLeftKidney"]=0.;
>> 76 energyTotal["logicalRightKidney"]=0.;
>> 77 energyTotal["logicalUrinaryBladder"]=0.;
>> 78 energyTotal["logicalUterus"]=0.;
>> 79 energyTotal["logicalLeftLung"]=0.;
>> 80 energyTotal["logicalRightLung"]=0.;
>> 81 energyTotal["logicalLeftOvary"]=0.;
>> 82 energyTotal["logicalRightOvary"]=0.;
>> 83 energyTotal["logicalLeftLegBone"]=0.;
>> 84 energyTotal["logicalRightLegBone"]=0.;
>> 85 energyTotal["logicalLeftBreast"]=0.;
>> 86 energyTotal["logicalRightBreast"]=0.;
>> 87 energyTotal["logicalLeftScapula"]=0.;
>> 88 energyTotal["logicalRightScapula"]=0.;
>> 89 energyTotal["logicalLeftAdrenal"]=0.;
>> 90 energyTotal["logicalRightAdrenal"]=0.;
>> 91
>> 92 // Create ROOT output file with ntuple containing the
>> 93 // energy deposition in the organs.
>> 94
>> 95 // Get analysis manager
>> 96 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
>> 97
>> 98 // Open a ROOT output file
>> 99 //
>> 100 G4String fileName = "g4humanphantom.root";
>> 101 analysisManager -> OpenFile(fileName);
>> 102
>> 103 // Create the ntuple
>> 104 analysisManager -> CreateNtuple("ntuple1", "Edep (MeV) in the organs");
>> 105 analysisManager -> CreateNtupleDColumn("ID"); // Integer identifying the organ
>> 106 analysisManager -> CreateNtupleDColumn("Edep"); // Energy deposition expressed in MeV
>> 107 analysisManager -> FinishNtuple();
92 } 108 }
93 109
94 void G4HumanPhantomRunAction::EndOfRunAction(c 110 void G4HumanPhantomRunAction::EndOfRunAction(const G4Run* aRun)
95 { 111 {
96 G4cout << "Number of events = " << aRun->Get 112 G4cout << "Number of events = " << aRun->GetNumberOfEvent() << G4endl;
97 totalRunEnergyDeposit(); 113 totalRunEnergyDeposit();
98 114
99 // Close the output ROOT file with the results << 115 // Get analysis manager
100 fAnalysisMan -> save(); << 116 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
>> 117
>> 118 // Save the ntuple and histograms and close the ROOT file
>> 119 analysisManager -> Write();
>> 120 analysisManager -> CloseFile();
101 } 121 }
102 122
>> 123
103 void G4HumanPhantomRunAction::Fill(G4String bN 124 void G4HumanPhantomRunAction::Fill(G4String bName,
104 G4double energyDeposit) 125 G4double energyDeposit)
>> 126
105 { 127 {
106 fEnergyTotal[bName] += energyDeposit; << 128 energyTotal[bName] += energyDeposit;
107 } 129 }
108 130
109 void G4HumanPhantomRunAction::totalRunEnergyDe 131 void G4HumanPhantomRunAction::totalRunEnergyDeposit()
110 { 132 {
111 std::map<std::string,G4double>::iterator i = << 133 std::map<std::string,G4double>::iterator i = energyTotal.begin();
112 std::map<std::string,G4double>::iterator end << 134 std::map<std::string,G4double>::iterator end = energyTotal.end();
113 135
114 G4double totalEnergyDepositInPhantom =0.; 136 G4double totalEnergyDepositInPhantom =0.;
115 G4int k=0; 137 G4int k=0;
116 while(i!=end) 138 while(i!=end)
117 { 139 {
118 G4String bodypart = i->first; 140 G4String bodypart = i->first;
119 G4double energyDep = i->second; 141 G4double energyDep = i->second;
120 // if(energyDep != 0.) 142 // if(energyDep != 0.)
121 // { 143 // {
122 144
123 G4cout << "Energy Total in Run:" << body << 145 G4cout << "Energy Total in Run" <<bodypart << " = "
124 << ", Energy Deposition (MeV): " << 146 << G4BestUnit(energyDep,"Energy")
125 << energyDep/MeV <<
126 << G4endl; 147 << G4endl;
127 148
128 // Fill Ntuple << 149 // Get analysis manager
129 fAnalysisMan -> FillNtupleWithEnergyDepos << 150 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
130 << 151
131 i++; << 152 // Fill ntuple
132 k++; << 153 analysisManager -> FillNtupleDColumn(0, k);
133 << 154 analysisManager -> FillNtupleDColumn(1, energyDep/MeV);
134 totalEnergyDepositInPhantom += energyDep; << 155 analysisManager -> AddNtupleRow();
>> 156 // }
>> 157 i++;
>> 158 k++;
>> 159 totalEnergyDepositInPhantom += energyDep;
135 } 160 }
136 161
>> 162
137 G4cout << "Total Energy deposit in the body i 163 G4cout << "Total Energy deposit in the body is: "
138 << totalEnergyDepositInPhantom/MeV << " MeV" 164 << totalEnergyDepositInPhantom/MeV << " MeV" <<G4endl;
139 } 165 }
>> 166
>> 167
>> 168
140 169