Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/moleculardna/src/DamageModel.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/advanced/dna/moleculardna/src/DamageModel.cc (Version 11.3.0) and /examples/advanced/dna/moleculardna/src/DamageModel.cc (Version 9.6.p4)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27 /// file: DamageModel.cc                          
 28 /// brief: Parameters related to the DNA Damag    
 29                                                   
 30 #include "DamageModel.hh"                         
 31                                                   
 32 //....oooOO0OOooo........oooOO0OOooo........oo    
 33                                                   
 34 DamageModel::DamageModel()                        
 35 {                                                 
 36   fpDamageMessenger = new DamageModelMessenger    
 37 }                                                 
 38                                                   
 39 //....oooOO0OOooo........oooOO0OOooo........oo    
 40                                                   
 41 G4bool DamageModel::IsDirectStrandBreak(const     
 42 {                                                 
 43   G4bool bool_val = false;                        
 44   if (d < fDirectDmgLower) {                      
 45     bool_val = false;                             
 46   }                                               
 47   else if (d >= fDirectDmgUpper) {                
 48     bool_val = true;                              
 49   }                                               
 50   else {                                          
 51     bool_val = (G4UniformRand() < ((d - fDirec    
 52   }                                               
 53   return bool_val;                                
 54 }                                                 
 55                                                   
 56 //....oooOO0OOooo........oooOO0OOooo........oo    
 57                                                   
 58 G4bool DamageModel::IsIndirectBaseDamage(const    
 59 {                                                 
 60   G4bool bool_val = false;                        
 61   if (mol->GetDefinition() == fOH) {              
 62     bool_val = (G4UniformRand() < fBaseOH);       
 63   }                                               
 64   else if (mol->GetDefinition() == fH) {          
 65     bool_val = (G4UniformRand() < fBaseH);        
 66   }                                               
 67   else if (mol->GetDefinition() == fe_aq) {       
 68     bool_val = (G4UniformRand() < fBaseEaq);      
 69   }                                               
 70   else {                                          
 71     bool_val = false;                             
 72   }                                               
 73   return bool_val;                                
 74 }                                                 
 75                                                   
 76 //....oooOO0OOooo........oooOO0OOooo........oo    
 77                                                   
 78 G4bool DamageModel::IsIndirectStrandDamage(con    
 79 {                                                 
 80   G4bool bool_val = false;                        
 81   if (mol->GetDefinition() == fOH) {              
 82     bool_val = (G4UniformRand() < fStrandOH);     
 83   }                                               
 84   else if (mol->GetDefinition() == G4Hydrogen:    
 85     bool_val = (G4UniformRand() < fStrandH);      
 86   }                                               
 87   else if (mol->GetDefinition() == G4Electron_    
 88     bool_val = (G4UniformRand() < fStrandEaq);    
 89   }                                               
 90   else {                                          
 91     bool_val = false;                             
 92   }                                               
 93   return bool_val;                                
 94 }                                                 
 95                                                   
 96 //....oooOO0OOooo........oooOO0OOooo........oo    
 97                                                   
 98 G4bool DamageModel::IsInducedStrandBreak(const    
 99 {                                                 
100   G4bool bool_val = false;                        
101   if (mol->GetDefinition() == fOH) {              
102     bool_val = (G4UniformRand() < fInductionOH    
103   }                                               
104   else if (mol->GetDefinition() == G4Hydrogen:    
105     bool_val = (G4UniformRand() < fInductionH)    
106   }                                               
107   else if (mol->GetDefinition() == G4Electron_    
108     bool_val = (G4UniformRand() < fInductionEa    
109   }                                               
110   else {                                          
111     bool_val = false;                             
112   }                                               
113   return bool_val;                                
114 }                                                 
115                                                   
116 //....oooOO0OOooo........oooOO0OOooo........oo    
117                                                   
118 void DamageModel::CheckValidProbability(const     
119 {                                                 
120   if ((p < 0) || (p > 1)) {                       
121     G4ExceptionDescription errmsg;                
122     errmsg << "Invalid probability for " << st    
123     G4Exception("DamageModel", "ERR_INVALID_PR    
124   }                                               
125 }