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25 //
26 /*
27 * G4DNAIRT.hh
28 *
29 * Created on: Jul 23, 2019
30 * Author: W. G. Shin
31 * J. Ramos-Mendez and B. Faddegon
32 */
33
34 #ifndef G4DNAIRT_HH_
35 #define G4DNAIRT_HH_
36
37
38 #include "G4DNAMolecularReaction.hh"
39 #include "G4DNAMolecularReactionTable.hh"
40 #include "G4ITReaction.hh"
41 #include "G4ITReactionTable.hh"
42 #include "G4ITTrackHolder.hh"
43 #include "G4Molecule.hh"
44 #include "G4MoleculeTable.hh"
45 #include "G4ParticleChange.hh"
46 #include "G4ThreeVector.hh"
47 #include "G4VDNAReactionModel.hh"
48 #include "G4VITReactionProcess.hh"
49 #include "globals.hh"
50
51 #include "AddClone_def.hh"
52
53 #include <map>
54 #include <vector>
55
56 class G4DNAMolecularReactionTable;
57 class G4VDNAReactionModel;
58 class G4ErrorFunction;
59
60 class G4DNAIRT : public G4VITReactionProcess
61 {
62 public:
63
64 G4DNAIRT();
65 explicit G4DNAIRT(G4VDNAReactionModel*);
66 ~G4DNAIRT() override;
67 G4DNAIRT(const G4DNAIRT& other) = delete;
68 G4DNAIRT& operator=(const G4DNAIRT& other) = delete;
69
70 G4bool TestReactibility(const G4Track&,
71 const G4Track&,
72 G4double ,
73 G4bool ) override;
74 std::vector<std::unique_ptr<G4ITReactionChange>> FindReaction(G4ITReactionSet*, const G4double, const G4double, const G4bool) override;
75 std::unique_ptr<G4ITReactionChange> MakeReaction(const G4Track&, const G4Track&) override;
76
77 void SetReactionModel(G4VDNAReactionModel*);
78
79 void Initialize() override;
80 void SpaceBinning();
81 void IRTSampling();
82 void Sampling(G4Track*);
83
84 G4double GetIndependentReactionTime(const G4MolecularConfiguration*, const G4MolecularConfiguration*, G4double);
85 G4int FindBin(G4int, G4double, G4double, G4double);
86 G4double SamplePDC(G4double , G4double );
87
88 protected:
89 const G4DNAMolecularReactionTable*& fMolReactionTable;
90 G4VDNAReactionModel* fpReactionModel;
91
92 private:
93 G4ITTrackHolder* fTrackHolder;
94 G4ITReactionSet* fReactionSet;
95 G4ErrorFunction* erfc;
96
97 std::map<G4int,std::map<G4int,std::map<G4int,std::vector<G4Track*>>>> spaceBinned;
98
99 G4double fRCutOff;
100 G4double timeMin;
101 G4double timeMax;
102
103 G4double fXMin, fYMin, fZMin;
104 G4double fXMax, fYMax, fZMax;
105 G4int fNx, fNy, fNz;
106 G4int xiniIndex, yiniIndex, ziniIndex;
107 G4int xendIndex, yendIndex, zendIndex;
108 };
109
110 #endif /* G4DNAIRT_HH_ */
111