| Geant4 Cross Reference |
1 # Category emdna History
2
3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for writing good git commit messages!
6
7 -------------------------------------------------------------------------------
8
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17)
10 - missing value in DNA PTB Ionization Structure;
11 - missing GetMaterial() in DNA PTB Excitation and Elastic models (PR#78,by mjpietrzak)
12
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16)
14 - Modified the molecule names of OH, HO2, O in MoleculeDefinition.
15 Each molecule configuration has a molecule definition.
16
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15)
18 - Fixed reported Coverity defects for use of std::move(), const auto&
19 and const iterators.
20
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14)
22 - debug invalid a root node of KDTree
23
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13)
25 - Fixed reported Coverity defects in G4LEPTSElossDistr and G4LEPTSDistribution
26 for explicit null dereferenced pointer and out-of-bounds reads; minor code
27 cleanup.
28
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12)
30 - Delete enum unused due to te use of EmParameters
31 to control chemistry models in G4EmDNAChemistry_option3.
32
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11)
34 - Fixed compilation error on macOS/clang with C++23 enabled, for the use
35 of std::function in G4OctreeFinder.
36
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10)
38 - Fixed compilation warning on macOS/XCode for implicit type conversion
39 in G4DNADoubleIonisationModel and G4DNAMultipleIonisationManager.
40
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09)
42 - Delete DelayLists at the end of chemistry stage
43 - clean the G4Scheduler
44
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08)
46 - G4DNAELSEPAElasticModel
47 - Modified to be compatible with density scaling
48
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07)
50 - Fixed compilation error on Windows VC++ with C++20 Standard enabled.
51 Added missing declarations for TG4MoleculeShoot specialisations on G4Track.
52 Based on [GitHub PR#69](https://github.com/Geant4/geant4/pull/69).
53
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06)
55 - debug invalid KDTree node.
56
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-02-05)
58 - G4GeneralIonIonisationModel, G4DNAIonChargeIncreaseModel,
59 G4DNAIonChargeDecreaseModel - new classes implementing general models for
60 ions heavier than Helium
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - removed obsolete definition of
62 min/max model energy inside processes class, code clean-up
63 - G4DNARuddIonisationExtendedModel - updated initialisation to allow be called
64 from the general model
65 - source.cmake in models sub-directory become using alphabetical order for
66 both .hh and .cc files
67
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04)
69 - G4DNAElectronHoleRecombination
70 - Changed the branch condition in FindReactant() to select only H2O+ ions
71 involved in electron-hole recombination
72 - G4DNAWaterDissociationDisplacer
73 - Added dissociative decay channels for multiple-ionized water ions
74 - G4DNAMultipleIonisationManager
75 - New class focusing on generation of multiple-ionized water ions and
76 calculation of scale parameter to compute cross-section of each
77 multiple-ionization process
78 - G4DNADoubleIonisation
79 - G4DNATripleIonisation
80 - G4DNAQuadrupleIonisation
81 - New process classes for multiple-ionization
82 - G4DNADoubleIonisationModel
83 - G4DNATripleIonisationModel
84 - G4DNAQuadrupleIonisationModel
85 - New model classes related to multiple-ionization
86
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-02-03)
88 - G4DNARuddIonisationExtendedModel - updated model: do not use autolock but
89 uppload data in the class constructor once in all threads, use
90 effective charge approach for all ions with Z > 2 (in order to have more
91 correct computation of stopping power and ranges), precompute internal
92 variables before sampling, optimized algorithm of sampling (at 10 MeV it
93 becomes ~10 times faster), removed unused parameters.
94
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02)
96 - correct verbose conditions for warning in IRT-syn model
97
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01)
99 - Optimize IRT-syn at 1 ps for high LET applications
100
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-02-00)
102 - G4DNABornAngle - fixed numerical problem: added protection for cosTheta;
103 use relativistic formula for max energy transfer to delta-electron
104
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25)
106 - Use G4FindDataDir to access data libraries in place of raw `getenv`.
107
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24)
109 - correct fastercode section for dna opt6
110
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23)
112 - correct scavenger counter for oxygen
113
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22)
115 - Fixed the K shell bug in G4DNARuddIonisationExtendedModel.cc
116
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21)
118 - improved equilibrium processes, introduced G4ChemEquilibrium
119
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20)
121 - In navigation classes, removed references to G4TouchableHistoryHandle,
122 which is now deprecated.
123
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19)
125 - Removed references to unused G4GRSSolid and G4GRSVolume in navigator classes.
126
127 ## 2023-08-29 (emdna-V11-01-18)
128 - Fix minor/obvious Coverity issues
129
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17)
131 - Apply core clang-tidy fixes plus those for
132 - Cons/destructor modernization
133 - Readability and logic for conditionals/booleans
134
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16)
136 - Apply patch from [GitHub PR 58](https://github.com/Geant4/geant4/pull/58)
137 - Use std::erfc to avoid precision loss
138 - Remove unused header
139
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15)
141 - minor correction for DNA material in option6
142
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14)
144 - use analytical method for DNA material in option6, water is unchanged
145
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-01-13)
147 - G4DNARuddIonisationExtendedModel - model re-written: shared date between
148 threads, applicable for scaled energy interval 100 eV to 100 MeV, if for
149 an ion data is not available proton x-section and effective charge are
150 used, sampling of delta-electron is done using two regions regression method
151
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12)
153 - Modified DNA cross section file name to new G4EMLOW8.4
154
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11)
156 - Add DNA cross section to dna_option6
157
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10)
159 - Fix Compilation warnings on XCode
160
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09)
162 - correct the initial values of G4DNAEventScheduler
163
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08)
165 - add time structure (pulsed beam) to water radiolysis (G4VUserPulseInfo)
166
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07)
168 - correct KDTree bug
169
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06)
171 - icsd physicslist: deleted unused model,
172 - Apdated RegisterModel function with new structure
173 - added model data to G4DNAMaterialManager singleton
174
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05)
176 - Fixed compilation warning on macOS/XCode for implicit type conversion
177 in G4DNAVacuumModel::Initialise().
178
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04)
180 - Introduced G4DNAMaterialManager to manage available DNA material
181 and keeps DNA cross section data in one thread.
182 - minor change in G4VDNAModel
183
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03)
185 - reorganize multiple material model of PTB model.
186 G4VDNAModel plays like a data layer for multiple material model.
187 The concrete models are independent of G4DNAModelInterface.
188
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02)
190 - replaced string to material index and clean the files(G4DNAPTBExcitationModel,
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel,G4DNAPTBIonisationStructure,
192 G4DNAPTBExcitationStructure) - PTB models
193 - added material pointer members for each concrete models(PTB models)
194 - removed unused objects (G4DataVector())
195
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01)
197 - clean G4DNAModelInterface file for the model combination of different materials
198
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00)
200 - fix coverity of G4DNARuddIonisationExtendedModel, G4DNADingfelderChargeIncreaseModel
201 (Uninitialized scalar variable) from cand1 analysis
202
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-00-39)
204 - G4DNARuddIonisationExtendedModel - fixed common work between DNA physics and
205 radioactive decay module - before this update test2.in macro crash, because
206 only 5 ions have data needed for this model; with this modification of the
207 model scaling relation to the carbon ion is used for any ion, which has
208 no data; low-energy limit is used now more correctly - all ions are stopped
209 but not killed, because they may have radioactive decay at rest; all commented
210 lines are removed from the class
211
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38)
213 - Fixed more compilation warnings for implicit type conversions.
214
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37)
216 - delete unused tests in dna (G4DNAProcessTest.cc and G4DNATest.cc)
217
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36)
219 - Fixed compilation warnings for implicit type conversions on macOS/XCode 14.1.
220
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-00-35)
222 - G4DNAUeharaScreenedRutherfordElasticModel - code cleanup; introduced
223 low and high energy limit for the model; removed missleading G4Exception
224
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34)
226 - Fix Coverity issues for ref-09
227
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33)
229 - minor correction of IRT-syn model (chemistry). Contact reactions should not happen
230 after 1 ps.
231
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna-V11-00-32)
233 - Add nitrogen models from PTra code
234
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31)
236 - Fixed minor mistake of file name in G4DNARPWBAIonisationModel,
237 - Added protection for HighEnergyLimit/LowEnergyLimit in G4DNARPWBAIonisationModel and
238 G4DNARPWBAExcitationModel
239
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30)
241 - Fixed compilation warnings on Intel/icx compiler for variables set
242 but not used in G4ITNavigator2.
243
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29)
245 - Fix user's report for IRT model.
246 If the first IRTSampling won't give any reactions, end the simu. No StepProcessor in this simu
247
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28)
249 - Fix Coverity static analysis for ref-08
250 uninit_member in G4DNAMillerGreenExcitationModel, G4DNARuddIonisationModel, G4DNADingfelderChargeDecreaseModel,
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddIonisationExtendedModel, G4DNAGillespieDirectMethod
252 Use auto & instead of auto : G4ITFinder, G4DNAScavengerMaterial, G4MoleculeCounter, G4OCTREE
253
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27)
255 - Resolve dependency inconsistencies :
256 dna/management/include/G4ChemicalMoleculeFinder.hh includes G4Molecule.hh from G4emdna-molman
257 dna/management/include/G4UserMeshAction.hh includes G4DNAMesh.hh from G4emdna-utils
258 dna/management/include/G4OctreeFinder.hh includes G4IRTUtils.hh from G4emdna-utils
259
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26)
261 - Partially resolve dependency inconsistencies
262 - NB: cannot be resolved fully without introducing a cycle between
263 G4emdna-man, G4emdna-molman, G4emdna-utils.
264
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25)
266 - Define G4CT_MAX_COUNT for changing "compile time counter" depth to fix build
267 errors on NVHPC compiler.
268
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-00-24)
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARotExcitation - class
271 cleanup according to the recent G4VEmProcess base class; model
272 headers are moved to source; C++11 keywards are introduced.
273
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23)
275 - G4DNABornIonisationModel1.cc, G4DNACPA100ElasticModel.cc,
276 G4DNACPA100IonisationModel.cc, G4DNAChampionElasticModel.cc,
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglouIonisationModel.cc,
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonExcitationModel.cc,
279 G4DNARPWBAIonisationModel.cc, G4DNARelativisticIonisationModel.cc,
280 G4DNASancheExcitationModel.cc :
281 use G4FindDataDir("G4LEDATA") to find dataset path on place of getenv.
282
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22)
284 - correct DNA ion definitions in G4DNARuddIonisationExtendedModel.
285
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21)
287 - G4Octree : fixed Coverity warning.
288
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20)
290 - update data structure to improve performance of the mesoscopic model.
291
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19)
293 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18)
296 - Added missing headers.
297
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17)
299 - change the scavenging filter of the IRT beyond 1 us proposed by Naoki and Jose
300
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16)
302 - Add localthread for fUse of G4VMoleculeCounter
303
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoang Tran (emdna-V11-00-15)
305 - Incorporation of model based on RPWBA to transport protons at 100-300 MeV.
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAIonisationModel.
307
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14)
309 - add UserBrownianAction in G4DNABrownianTransportation and
310 G4DNAMolecularDissociation
311 - replace G4int by int64_t for width integer types
312 - add fResetScavenger in G4SchedulerMessenger
313
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13)
315 - save local instances for recurrent access to particle definition in
316 G4DNAMillerGreenExcitationModel, G4DNARuddIonisationExtendedModel and
317 G4DNARuddIonisationModel
318 - use G4Pow and G4Log instead of std::pow and std::log
319 - inside G4DNARuddIonisationExtendedModel commented out ions that are not
320 inside G4DNAGenericIonsManager
321
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12)
323 - Debug the report #2235 which might be related to KDtree algorithm
324 - Clean code
325 - Delete G4ITFinder.cc
326
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11)
328 - save local instances for recurrent access to particle definition in
329 G4DNADingfelderChargeDecreaseModel and G4DNADingfelderChargeIncreaseModel
330 - use G4Pow and G4Log instead of std::pow and std::log
331
332 ## 2022-03-18 SI (emdna-V11-00-10)
333 - add protection in G4DNACPA100IonisationModel for cum. xs interpolation
334
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09)
336 - remove macro commands to control the chemistry models in G4SchedulerMessenger
337 (creating models in G4SchedulerMessenger can make circular dependency problems)
338 - add flag OctreeFinder in IRT_syn's Initialize()
339
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08)
341 - add macro commands to control the chemistry models,
342 parameters including the chemical molecules and reaction list involved in the radiolysis
343
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07)
345 - optimize IRT-syn model, use reaction radius and reaction type from the reaction table
346 - delete G4VReactionType, G4DNAReactionTypeManager, G4DNATotallyDiffusionControlled,
347 G4DNAPartiallyDiffusionControlled
348 - delete G4DNAIRT_geomtries
349
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06)
351 - `G4ITTransportation`: Make `PrepareState` more function-like, expect semicolon
352 - `G4DNAPolyNucleotideReactionProcess`:
353 - Move `PrepareState` and `State` macros into `.cc` file
354 - Make `PrepareState` more function-like, expect semicolon
355 - Move variable `pMoleculeA` under `G4VERBOSE`
356
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05)
358 - add the condition of water material for the OUTSIDE_OF_MOTHER_VOLUME
359 warning in G4DNAMolecularDissociation::DecayIt()
360
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04)
362 - modify the macro in G4Molecule.cc and G4ITType.hh for linker problems on Windows
363
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03)
365 - Prefer pointer to `const G4Material` if possible
366
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02)
368 - Remove useless `const_cast` of `G4VSensitiveDetector`
369
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01)
371 - add G4DNAPolyNucleotideReactionProcess, G4VDNAHitModel
372 files for DNA damage applications
373
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00)
375 - Change to new Markdown History format
376
377 ---
378
379 # History entries prior to 11.0
380
381 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT
384
385 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc,
388 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry
390
391 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTable
396
397 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4PhysicsVector
408
409 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAElasticModel
411
412 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled.
415
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold
422
423 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model
425
426 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API
428
429 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils
433
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated print method
436
437 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to externals module.
442
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new dissociation channel
449
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs.
453 Some code cleanup.
454
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed
458
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of the singleton
462
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10-06-05)
466
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning
469
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings
472 - Fix of IRT bug
473 (protection for the crash induced by empty reaction set)
474
475 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency to G4emdna-utils
477
478 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History
482
483 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test
485
486 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition). Now deleted.
489
490 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes
493
494 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception in G4DNAIRT class
496
497 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT
499 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503
504 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions from size_t to G4int.
506
507 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapting external navigators)
515
516 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel
518
519 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated
523
524 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings
526
527 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule
529
530 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean code
533
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombination.
537
538 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4DNAMolecularDissociation
540
541 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543
544 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep()
547
548 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag
550
551 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554
555 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2)
557
558 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models
560
561 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission
563
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager
566
567 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models
569
570 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu
572
573 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu
575
576 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-04-01.
581
582 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting these.
587
588 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory
590
591 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - needed in test
593
594 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models
596
597 10-08-2017, SI tag emdna-V10-03-27
598 - test
599
600 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous
602
603 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous
605
606 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608
609 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611
612 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisation.
614
615 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in ionisation models.
617
618 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS data file.
620
621 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag)
623
624 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in ionisation models.
626
627 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632
633 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635
636 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes.
638
639 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641
642 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile
644
645 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc
647
648 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation
652
653 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called.
658
659 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665
666 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668
669 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671
672 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure of the new material management system
674
675 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679
680 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel
683
684 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes
686
687 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake
689
690 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2
692
693 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes
695
696 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage
699
700 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702
703 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared
706 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to cc file - windows crash
708
709 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711
712 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms
715
716 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather than expression
719
720 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI
722
723 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing
725
726 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter
732
733 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety
738
739 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation electron processes
741
742 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process()
744
745 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749
750 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e-
759
760 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models
763
764 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766
767 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags
770
771 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1
773
774 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation
777
778 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used
789 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is killed
805
806 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808
809 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition
813
814 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817
818 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries
821
822 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models
824
825 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06
827
828 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel
831
832 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834
835 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel
838
839 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration
841
842 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845
846 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp
848
849 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp
851
852 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp
854
855 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP)
860
861 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863
864 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation method change
867
868 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy
871
872 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file
875
876 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables
878
879 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes
881
882 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove useless verbose
884
885 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888
889 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh
893
894 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on windows
899
900 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted
907 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined (they will just not be taken
912 into account)
913 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914
915 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call
919
920 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the mother track
924 (causing navigator complains)
925
926 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4String
928
929 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this
936
937 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected
941 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release
944
945 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947
948 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out of bounds
950
951 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage
953
954 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel
956
957 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959
960 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963
964 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings
966
967 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors
969
970 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic models
972
973 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gillespie models
976
977 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. in SR elastic models
979
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot.
983
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger.
987
988 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporarily
990
991 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added
993
994 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_ptr dependency
996
997 24-07-2015, MK
998 - G4MolecularReactionTable
999 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box
1002
1003 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again
1007
1008 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbose mode
1011
1012 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015
1016 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021
1022 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition:
1029 ::SetFormatedName added
1030 ::NewConfiguration methods added
1031 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added
1035 - G4MolecularConfiguration:
1036 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models
1042 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added
1047
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection.
1051
1052 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description
1055
1056 16-06-205, MK
1057 - Add G4Scheduler::GetGun()
1058
1059 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double free
1062
1063 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPosition()
1065
1066 04-06-2015, MK
1067 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[]
1069
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as needed to adjust
1075
1076 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()".
1079
1080 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake
1083 - Born headears: includes both model versions when proxy header is included
1084
1085 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary)
1091
1092 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094
1095 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097
1098 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation error
1101
1102 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104
1105 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build tree
1107
1108 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection
1111 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added
1115
1116 02-05-2015, MK
1117 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method
1121 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime
1124 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126
1127 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing History file
1129
1130 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference
1133
1134 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138
1139 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143
1144 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtendedModel
1146
1147 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval of water density
1150
1151 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran.
1153
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5.
1157
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files:
1161 G4ITTransportationManager.icc
1162 G4KDNode.icc
1163 G4KDTree.icc
1164 G4MoleculeFinder.hh
1165
1166 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary
1171
1172 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag
1174
1175 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation
1178 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments
1181
1182 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemistry is not activated) exception
1184
1185 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose
1188 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to initialized the chemistry
1192
1193 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations
1195
1196 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on all platforms
1198
1199 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platforms
1201
1202 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang
1204
1205 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of John
1210
1211 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time computation for crossing
1216 boundaries
1217
1218 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in PW elastic model
1220
1221 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found
1224
1225 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMessenger
1227
1228 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun
1231
1232 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings
1234
1235 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings
1237
1238 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake
1240
1241 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS
1243
1244 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS
1246
1247 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler
1249
1250 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings
1252
1253 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added
1259 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed
1262
1263 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure time
1265
1266 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time
1268
1269 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the manager's
1271 table when deleted
1272 - update disclaimer
1273
1274 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code
1276 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose
1278
1279 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283
1284 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the application level in TimeStepAction
1286
1287 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291
1292 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChemistryManager
1294
1295 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger
1297 Tag before architecture change
1298
1299 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electron excitation
1301
1302 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keyword in code.
1304
1305 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage
1309 - requires G4EMLOW6.39
1310
1311 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/impl
1313 Prepare for release
1314
1315 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators as pointers
1319
1320 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in G4DNAGenericIonsManager
1322
1323 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to use angular generator
1326 interface
1327
1328 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4
1330
1331 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3
1333
1334 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2
1336
1337 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings
1339
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis
1343 G4EMLOW6.38 needed
1344
1345 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in
1347 G4DNABornIonisationModel
1348
1349 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some headers and use of <>/"".
1353
1354 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is off
1356
1357 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359
1360 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev to prevent build errors with gmake
1362
1363 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now
1366
1367 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build error on mac
1369
1370 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors and warnings on mac
1372
1373 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration)
1376
1377 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend class a template argument)
1380
1381 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows platform
1383
1384 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387
1388 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt
1390
1391 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry
1393
1394 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kinetic for fast code
1396
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401
1402 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for MT
1404
1405 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36
1409
1410 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused variable
1412
1413 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisation time
1416
1417 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed obsolete unused header
1419
1420 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton check introduced in previous tag
1422
1423 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis
1425
1426 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release
1428
1429 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431
1432 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again
1434
1435 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before
1437
1438 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1
1442
1443 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProcess.
1447
1448 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modification introduced in previous tag
1450
1451 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc
1453
1454 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456
1457 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons
1459
1460 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version
1464
1465 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduced in previous tag.
1468
1469 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows.
1474
1475 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33
1478
1479 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDMap for specific gcc version
1481
1482 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fix compilation errors on mac
1484 but still not in usage
1485
1486 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std:ceil call on windows
1488
1489 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator
1491
1492
1493 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map
1496
1497 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable
1502 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507
1508 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993)
1511
1512 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps...
1515
1516 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statements and
1529 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 64725)
1531
1532 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes
1535
1536 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented)
1539
1540 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543
1544 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include history changes
1546
1547 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning
1549
1550 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag
1552
1553 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers
1555 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557
1558 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for real killings in models.
1560
1561 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove implicit inclusion from globals.hh.
1564
1565 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous tag
1567
1568 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed
1570
1571 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name
1574
1575 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scattering low limit
1577
1578 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing
1580
1581 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + correct coverity warnings
1583
1584 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586
1587 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager
1590 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager
1592
1593 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called using a material that is
1596 not defined as a molecule
1597
1598 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMolecularMaterial
1603
1604 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial
1606 Add G4DNADamages
1607
1608 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProcessing()
1611
1612 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP
1614
1615 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows compilator (VC++)
1617
1618 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular decay, in case no decay channel was proposed in input
1620
1621 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryManager :
1624 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepManager::Process()
1627
1628 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06
1630
1631 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for synchronous tracking
1633 New classes :
1634 * G4ITTransportationManager
1635 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and brownian ITTransportation
1639
1640 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess
1643 -> become size_t + related changes
1644 * when a poststep process proposes an IL < 0
1645 => considered as a time, and transportation::computestep
1646 is used
1647
1648 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning
1650
1651 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings
1654
1655 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in utils
1657
1658 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of the solvated electron
1661 using Sanche thermalization
1662
1663 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section file for elastic scattering
1665
1666 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag
1668
1669 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at the reaction site
1671 rather than center of mass in DNAMolecularReaction
1672
1673 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT.
1676 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use.
1678
1679 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (bug)
1683 Give priority to G4Processes over reaction processes
1684 when the time steps returned by the time stepper
1685 and the processes are equal
1686 Improve verbose
1687
1688 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & process
1692
1693 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager
1696
1697 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701
1702 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows.
1706 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc
1708
1709 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectronModel
1711
1712 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release
1714 Add comment into source
1715 Change name of some methods
1716 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan)
1719
1720 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager.
1724
1725 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode.
1728 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in userReactionAction
1730
1731 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings
1733
1734 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a decay time to a given
1738 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release
1741
1742 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake
1744
1745 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake
1748
1749 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList on Windows
1752
1753 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it properly defined.
1756
1757 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnings
1762
1763 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception
1766
1767 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models
1772
1773 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni
1775 coverity errors.
1776
1777 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared_ptr
1779
1780 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes
1782 G4MolecularConfiguration::fManager added
1783
1784 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & models
1787 Add chemical processes
1788
1789 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24
1792
1793 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24
1795
1796 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous tag
1798
1799 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed by Z. Francis
1801
1802 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous tag
1804
1805 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files
1807
1808 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory
1810 First tag with "management" files
1811
1812 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc
1815
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLists.txt
1818
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture.
1821
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation)
1825
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering for G4Exception
1828
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception syntax
1831
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information in ionisation models
1834
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARuddIonisation*
1837
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information.
1840
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in ionization models.
1843
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal
1846
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for
1849 G4DNAChargeIncrease
1850 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e-
1856
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal
1859
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal
1862
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation Models
1865
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc.
1869
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numbering.
1872
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings.
1875
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling of variable density.
1878
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to configuration files.
1881
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files.
1884
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in electromagnetic category.