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Geant4/externals/g4tools/include/toolx/hdf5/pages

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  1 // Copyright (C) 2010, Guy Barrand. All rights reserved.
  2 // See the file tools.license for terms.
  3 
  4 #ifndef toolx_hdf5_pages
  5 #define toolx_hdf5_pages
  6 
  7 #include "T_tools"
  8 #include "tools"
  9 
 10 #include <tools/S_STRING>
 11 
 12 #ifdef TOOLS_MEM
 13 #include <tools/mem>
 14 #endif
 15 
 16 #include <ostream>
 17 
 18 namespace toolx {
 19 namespace hdf5 {
 20 
 21 TOOLS_GLOBAL_STRING(pages)
 22 TOOLS_GLOBAL_STRING(entries)
 23 TOOLS_GLOBAL_STRING(columns)
 24 TOOLS_GLOBAL_STRING(names)
 25 TOOLS_GLOBAL_STRING(forms)
 26 
 27 class pages {
 28   TOOLS_SCLASS(toolx::hdf5::pages)
 29 public:
 30   pages(std::ostream& a_out,
 31         hid_t a_group,const std::string& a_name,const std::string& a_form,
 32         bool a_write,unsigned int a_compress)
 33   :m_out(a_out),m_name(a_name),m_form(a_form)
 34   //,m_type(0),m_size(0)
 35   ,m_group(-1),m_dataset(-1),m_write(a_write),m_compress(a_compress),m_entries(0),m_pos(0){
 36 #ifdef TOOLS_MEM
 37     tools::mem::increment(s_class().c_str());
 38 #endif
 39     if(m_write) {
 40       m_group = toolx_H5Gcreate(a_group,m_name.c_str(),0);
 41       if(m_group<0) {
 42         m_out << "pages::pages : can't create group for column " << m_name << "." << std::endl;
 43         m_group = -1;
 44   return;
 45       }
 46       if(!write_atb(m_group,"class",s_class())) {
 47         m_out << "pages::pages : write_atb(class) failed." << std::endl;
 48         ::H5Gclose(m_group);
 49         m_group = -1;
 50         return;
 51       }
 52       int v = 1;
 53       if (!write_scalar_atb<int>(m_group,"version",v)) {
 54         m_out << "pages::pages : write_scalar_atb(version) failed." << std::endl;
 55         ::H5Gclose(m_group);
 56         m_group = -1;
 57         return;
 58       }
 59     } else {
 60       m_group = toolx_H5Gopen(a_group,m_name.c_str());
 61       if(m_group<0) {
 62         m_out << "pages::pages : can't open group for column " << m_name << "." << std::endl;
 63         m_group = -1;
 64   return;
 65       }
 66       if(!read_scalar<tools::uint64>(m_group,s_entries(),m_entries)) {
 67         m_out << "pages::pages : read_scalar(entries) failed." << std::endl;
 68         ::H5Gclose(m_group);
 69         m_group = -1;
 70   return;
 71       }
 72     }
 73   }
 74   virtual ~pages(){
 75     if(m_write) {
 76       if(!write_scalar<tools::uint64>(m_group,s_entries(),m_entries)) {
 77         m_out << "pages::~pages : write_scalar(entries) failed." << std::endl;
 78       }
 79       if(m_dataset>=0) ::H5Dclose(m_dataset);
 80     }
 81     ::H5Gclose(m_group);
 82 #ifdef TOOLS_MEM
 83     tools::mem::decrement(s_class().c_str());
 84 #endif
 85   }
 86 protected:
 87   pages(const pages& a_from):m_out(a_from.m_out){
 88 #ifdef TOOLS_MEM
 89     tools::mem::increment(s_class().c_str());
 90 #endif
 91   }
 92   pages& operator=(const pages&){return *this;}
 93 public:
 94   bool is_valid() const {return m_group<0?false:true;}
 95 
 96   const std::string& name() const {return m_name;}
 97   const std::string& form() const {return m_form;}
 98   //int type() const {return m_type;}
 99   //unsigned int size() const {return m_size;}
100   tools::uint64 entries() const {return m_entries;}
101   tools::uint64 pos() const {return m_pos;}
102   void reset_pos() {m_pos = 0;}
103 
104   template <class TYPE>
105   bool write_page(size_t a_size,const TYPE* a_array) {
106     if(!m_pos) {
107       if(!write_array<TYPE>(m_group,s_pages(),a_size,a_array,a_size?a_size:32,m_compress)) {
108         m_out << "pages::write_page : write_array<TYPE>() failed. Pos " << m_pos << std::endl;
109         return false;
110       }
111       m_dataset = toolx_H5Dopen(m_group,s_pages().c_str());
112       if(m_dataset<0) {
113         m_out << "pages::write_page : H5Dopen failed. Pos " << m_pos << std::endl;
114         return false;
115       }
116     } else {
117       if(!write_append_array_dataset<TYPE>(m_dataset,a_size,a_array)) {
118         m_out << "pages::write_page : write_append_array_dataset<TYPE>() failed. Pos " << m_pos << std::endl;
119         return false;
120       }
121     }
122     m_pos += a_size;
123     m_entries = m_pos;
124     return true;
125   }
126 
127   template <class TYPE>
128   bool read_page(size_t a_size,TYPE* a_array) {
129     //it is assumed that a_array can contain a_size*sizeof(TYPE) bytes.
130     unsigned int _size = a_size;
131     unsigned int n = 0;
132     TYPE* array = 0;
133     if(!read_sub_array<TYPE>(m_group,s_pages(),(unsigned int)m_pos,(unsigned int)_size,n,array)) {
134       m_out << "pages::read_page : read_sub_array<TYPE>() failed." << std::endl;
135       return false;
136     }
137     if(n!=_size) {
138       m_out << "pages::read_page : size mismatch. Requested " << _size << ", got "<< n << "." << std::endl;
139       delete [] array;
140       return false;
141     }
142 
143    {TYPE* rpos = (TYPE*)array;
144     TYPE* wpos = (TYPE*)a_array;
145     for(size_t i=0;i<n;i++,rpos++,wpos++) *wpos = *rpos;
146     for(size_t i=n;i<_size;i++,rpos++,wpos++) *wpos = TYPE();}
147 
148     delete [] array;
149 
150     m_pos += n;
151     return true;
152   }
153 
154   template <class TYPE>
155   bool write_vlen(size_t a_size,const TYPE* a_array) {
156     if(!m_pos) {
157       if(!hdf5::write_vlen<TYPE>(m_group,s_pages(),a_size,a_array,a_size?a_size:32,m_compress)) {
158         m_out << "pages::write_vlen : write_vlen<TYPE>() failed. Pos " << m_pos << std::endl;
159         return false;
160       }
161       m_dataset = toolx_H5Dopen(m_group,s_pages().c_str());
162       if(m_dataset<0) {
163         m_out << "pages::write_vlen : H5Dopen failed. Pos " << m_pos << std::endl;
164         return false;
165       }
166     } else {
167       if(!write_append_vlen_dataset<TYPE>(m_dataset,a_size,a_array)) {
168         m_out << "pages::write_vlen : write_append_vlen_dataset<TYPE>() failed. Pos " << m_pos << std::endl;
169         return false;
170       }
171     }
172     m_pos++;
173     m_entries++;
174     return true;
175   }
176 
177   template <class TYPE>
178   bool read_vlen(size_t& a_size,TYPE*& a_array) {
179     //it is assumed that a_array can contain a_size*sizeof(TYPE) bytes.
180     unsigned int sz;
181     if(!read_sub_vlen<TYPE>(m_group,s_pages(),(unsigned int)m_pos,sz,a_array)) {
182       m_out << "pages::read_vlen : read_sub_vlen<TYPE>() failed." << std::endl;
183       a_size = 0;
184       a_array = 0;
185       return false;
186     }
187     a_size = sz;
188     m_pos++;
189     m_entries++;
190     return true;
191   }
192 
193   bool write_string(const std::string& a_string) {
194     if(!m_pos) {
195       if(!hdf5::write_string_dataset(m_group,s_pages(),a_string,128,m_compress)) { //32=>enforce extendable.
196         m_out << "pages::write_string : hdf5::write_string() failed. Pos " << m_pos << std::endl;
197         return false;
198       }
199       m_dataset = toolx_H5Dopen(m_group,s_pages().c_str());
200       if(m_dataset<0) {
201         m_out << "pages::write_string : H5Dopen failed. Pos " << m_pos << std::endl;
202         return false;
203       }
204     } else {
205       if(!write_append_string_dataset(m_dataset,a_string)) {
206         m_out << "pages::write_string : write_append_string_dataset() failed. Pos " << m_pos << std::endl;
207         return false;
208       }
209     }
210     m_pos++;
211     m_entries++;
212     return true;
213   }
214 
215   bool read_string(std::string& a_string) {
216     if(!read_sub_string(m_group,s_pages(),(unsigned int)m_pos,a_string)) {
217       m_out << "pages::read_string : read_sub_string() failed." << std::endl;
218       a_string.clear();
219       return false;
220     }
221     m_pos++;
222     m_entries++;
223     return true;
224   }
225 
226 /*
227   bool write_string(const std::string& a_string) {return write_vlen<char>(a_string.size(),a_string.c_str());}
228 
229   bool read_string(std::string& a_string) {
230     size_t sz;char* _data;
231     if(!read_vlen<char>(sz,_data)) {a_string.clear();return false;}
232     a_string.resize(sz);
233     for(size_t index=0;index<sz;index++) a_string[index] = _data[index];
234     delete [] _data;
235     return true;
236   }
237 */
238 
239 /*
240   bool write_strings(size_t a_number,void* a_array) {
241     size_t sz = m_size*a_number;
242     char* buffer = new char[sz];
243    {char* pos = buffer;
244     for(size_t index=0;index<sz;index++,pos++) *pos = ' ';}
245 
246    {char** strings = (char**)a_array;
247     char* pos = buffer;
248     size_t ls;
249     for(size_t index=0;index<a_number;index++) {
250       char* ss = strings[index];
251       ls = ::strlen(ss);
252       ::memcpy(pos,ss,ls); //do not copy the ending 0.
253       *(pos+m_size-1) = 0;
254       pos += m_size;
255     }}
256 
257     if(!m_pos) {
258       unsigned int chunked = 32*m_size; //<size>A strings.
259       if(!write_array<char>(m_group,s_pages(),sz,buffer,chunked,m_compress)) {
260         m_out << "pages::write_strings : write_strings() failed. Pos " << m_pos << std::endl;
261         return false;
262       }
263       m_dataset = toolx_H5Dopen(m_group,s_pages().c_str());
264       if(m_dataset<0) {
265         m_out << "pages::write_strings : H5Dopen failed. Pos " << m_pos << std::endl;
266         return false;
267       }
268     } else {
269       if(!write_append_array_dataset<char>(m_dataset,sz,buffer)) {
270         m_out << "pages::write_strings : write_append_strings() failed. Pos " << m_pos << std::endl;
271         return false;
272       }
273     }
274     m_pos += a_number;
275     m_entries = m_pos;
276     return true;
277   }
278 
279   bool read_strings(size_t a_size,char* a_array) {
280     unsigned int _size = a_size*m_size;
281     unsigned int n = 0;
282     char* array = 0;
283     if(!read_sub_array<char>(m_group,s_pages(),m_pos,_size,n,array)) {
284       m_out << "pages::read_strings : read_sub_array<char>() failed." << std::endl;
285       return false;
286     }
287     if(n!=_size) {
288       m_out << "pages::read_strings : size mismatch. Requested " << _size << ", got "<< n << "." << std::endl;
289       delete [] array;
290       return false;
291     }
292     char* pos = array;
293    {char** strings = (char**)a_array;
294     for(size_t index=0;index<a_size;index++) {
295       ::memcpy(strings[index],pos,m_size*sizeof(char));
296       pos += m_size;
297     }}
298     delete [] array;
299     m_pos += n;
300     return true;
301   }
302 */
303 protected:
304   std::ostream& m_out;
305   std::string m_name;
306   std::string m_form;
307   //int m_type;
308   //unsigned int m_size;
309   hid_t m_group;
310   hid_t m_dataset;
311   bool m_write;
312   unsigned int m_compress; //if write.
313   tools::uint64 m_entries;
314   tools::uint64 m_pos;
315 };
316 
317 }}
318 
319 #endif