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Geant4/examples/extended/medical/dna/wholeNuclearDNA/src/SteppingAction.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // and the DNA geometry given in the Geom_DNA example
 29 // shall cite the following Geant4-DNA collaboration publications:
 30 // [1] NIM B 298 (2013) 47-54
 31 // [2] Med. Phys. 37 (2010) 4692-4708
 32 // The Geant4-DNA web site is available at http://geant4-dna.org
 33 //
 34 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 35 /// \file SteppingAction.cc
 36 /// \brief Implementation of the SteppingAction class
 37 
 38 #include "SteppingAction.hh"
 39 
 40 // G4
 41 #include "CommandLineParser.hh"
 42 
 43 #include "G4AnalysisManager.hh"
 44 
 45 #include <G4SystemOfUnits.hh>
 46 #include <G4Track.hh>
 47 #include <G4VProcess.hh>
 48 #include <globals.hh>
 49 
 50 using namespace G4DNAPARSER;
 51 
 52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 53 
 54 SteppingAction::SteppingAction() : G4UserSteppingAction() {}
 55 
 56 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 57 
 58 SteppingAction::~SteppingAction() {}
 59 
 60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 61 
 62 void SteppingAction::UserSteppingAction(const G4Step* step)
 63 {
 64   G4double flagParticle = 0.;
 65   G4double flagProcess = 0.;
 66   G4double flagVolume = 0.;
 67   G4double x, y, z, xp, yp, zp;
 68   G4double dE;
 69 
 70   dE = step->GetTotalEnergyDeposit() / eV;
 71 
 72   const G4String& particleName =
 73     step->GetTrack()->GetDynamicParticle()->GetDefinition()->GetParticleName();
 74 
 75   const G4String& processName = step->GetPostStepPoint()->GetProcessDefinedStep()->GetProcessName();
 76 
 77   const G4String& volumeName = step->GetPreStepPoint()->GetPhysicalVolume()->GetName();
 78 
 79   if (particleName == "e-")
 80     flagParticle = 10;
 81   else if (particleName == "proton")
 82     flagParticle = 20;
 83   else if (particleName == "hydrogen")
 84     flagParticle = 30;
 85   else if (particleName == "alpha")
 86     flagParticle = 40;
 87   else if (particleName == "alpha+")
 88     flagParticle = 50;
 89   else if (particleName == "helium")
 90     flagParticle = 60;
 91 
 92   if (processName == "e-_G4DNAElastic")
 93     flagProcess = 11;
 94   else if (processName == "e-_G4DNAExcitation")
 95     flagProcess = 12;
 96   else if (processName == "e-_G4DNAIonisation")
 97     flagProcess = 13;
 98   else if (processName == "e-_G4DNAAttachment")
 99     flagProcess = 14;
100   else if (processName == "e-_G4DNAVibExcitation")
101     flagProcess = 15;
102   else if (processName == "eCapture")
103     flagProcess = 16;
104   //  if (step->GetPostStepPoint()->GetProcessDefinedStep()
105   // ->GetProcessName()=="msc")        flagProcess =17;
106 
107   else if (processName == "proton_G4DNAExcitation")
108     flagProcess = 21;
109   else if (processName == "proton_G4DNAIonisation")
110     flagProcess = 22;
111   else if (processName == "proton_G4DNAChargeDecrease")
112     flagProcess = 23;
113 
114   else if (processName == "hydrogen_G4DNAExcitation")
115     flagProcess = 31;
116   else if (processName == "hydrogen_G4DNAIonisation")
117     flagProcess = 32;
118   else if (processName == "hydrogen_G4DNAChargeIncrease")
119     flagProcess = 33;
120 
121   else if (processName == "alpha_G4DNAExcitation")
122     flagProcess = 41;
123   else if (processName == "alpha_G4DNAIonisation")
124     flagProcess = 42;
125   else if (processName == "alpha_G4DNAChargeDecrease")
126     flagProcess = 43;
127 
128   else if (processName == "alpha+_G4DNAExcitation")
129     flagProcess = 51;
130   else if (processName == "alpha+_G4DNAIonisation")
131     flagProcess = 52;
132   else if (processName == "alpha+_G4DNAChargeDecrease")
133     flagProcess = 53;
134   else if (processName == "alpha+_G4DNAChargeIncrease")
135     flagProcess = 54;
136 
137   else if (processName == "helium_G4DNAExcitation")
138     flagProcess = 61;
139   else if (processName == "helium_G4DNAIonisation")
140     flagProcess = 62;
141   else if (processName == "helium_G4DNAChargeIncrease")
142     flagProcess = 63;
143 
144   // if (step->GetPreStepPoint()->GetProcessDefinedStep()->
145   //  GetProcessName()=="hIoni")        flagProcess =24;
146   // if (step->GetPreStepPoint()->GetProcessDefinedStep()->
147   //  GetProcessName()=="eIoni")        flagProcess =18;
148 
149   if (volumeName == "physi sugar 2")
150     flagVolume = 1;
151   else if (volumeName == "physi sugar 4")
152     flagVolume = 2;
153 
154   if (flagVolume != 0 && dE != 0) {
155     x = step->GetPreStepPoint()->GetPosition().x() / nanometer;
156     y = step->GetPreStepPoint()->GetPosition().y() / nanometer;
157     z = step->GetPreStepPoint()->GetPosition().z() / nanometer;
158     xp = step->GetPostStepPoint()->GetPosition().x() / nanometer;
159     yp = step->GetPostStepPoint()->GetPosition().y() / nanometer;
160     zp = step->GetPostStepPoint()->GetPosition().z() / nanometer;
161 
162     // The lines below could be put upper to gain time in the simulation
163     // Added here for testing that all the retrieve information are
164     // correctly working
165     CommandLineParser* parser = CommandLineParser::GetParser();
166     Command* command(0);
167     if ((command = parser->GetCommandIfActive("-out")) == 0) return;
168 
169     // get analysis manager
170     G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
171 
172     analysisManager->FillNtupleDColumn(0, flagParticle);
173     analysisManager->FillNtupleDColumn(1, flagProcess);
174     analysisManager->FillNtupleDColumn(2, flagVolume);
175     analysisManager->FillNtupleDColumn(3, xp);
176     analysisManager->FillNtupleDColumn(4, yp);
177     analysisManager->FillNtupleDColumn(5, zp);
178     analysisManager->FillNtupleDColumn(6, dE);
179     analysisManager->FillNtupleDColumn(
180       7, std::sqrt((x - xp) * (x - xp) + (y - yp) * (y - yp) + (z - zp) * (z - zp)));
181 
182     analysisManager->AddNtupleRow();
183   }
184 }
185