Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/wholeNuclearDNA/src/RunAction.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //
 32 /// \file RunAction.cc
 33 /// \brief Implementation of the RunAction class
 34 
 35 #include "RunAction.hh"
 36 
 37 #include "CommandLineParser.hh"
 38 
 39 #include "G4AnalysisManager.hh"
 40 #include "G4Run.hh"
 41 #include "G4RunManager.hh"
 42 #include "G4Threading.hh"
 43 
 44 using namespace G4DNAPARSER;
 45 
 46 void PrintNParticles(std::map<const G4ParticleDefinition*, int>& container);
 47 
 48 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 49 
 50 RunAction::RunAction() : G4UserRunAction(), fInitialized(0), fDebug(false) {}
 51 
 52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 53 
 54 RunAction::~RunAction() {}
 55 
 56 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 57 
 58 void RunAction::BeginOfRunAction(const G4Run* run)
 59 {
 60   // In this example, we considered that the same class was
 61   // used for both master and worker threads.
 62   // However, in case the run action is long,
 63   // for better code review, this practice is not recommanded.
 64   //
 65   // Please note, in the example provided with the Geant4 X beta version,
 66   // this RunAction class were not used by the master thread.
 67 
 68   bool sequential =
 69     (G4RunManager::GetRunManager()->GetRunManagerType() == G4RunManager::sequentialRM);
 70 
 71   if (isMaster && sequential == false)
 72   // WARNING : in sequential mode, isMaster == true
 73   {
 74     BeginMaster(run);
 75   }
 76   else
 77     BeginWorker(run);
 78 }
 79 
 80 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 81 
 82 void RunAction::EndOfRunAction(const G4Run* run)
 83 {
 84   bool sequential =
 85     (G4RunManager::GetRunManager()->GetRunManagerType() == G4RunManager::sequentialRM);
 86 
 87   if (isMaster && sequential == false) {
 88     EndMaster(run);
 89   }
 90   else {
 91     EndWorker(run);
 92   }
 93 }
 94 
 95 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 96 
 97 void RunAction::BeginMaster(const G4Run* run)
 98 {
 99   if (fDebug) {
100     bool sequential =
101       (G4RunManager::GetRunManager()->GetRunManagerType() == G4RunManager::sequentialRM);
102     G4cout << "===================================" << G4endl;
103     if (!sequential) G4cout << "================ RunAction::BeginMaster" << G4endl;
104     PrintRunInfo(run);
105     G4cout << "===================================" << G4endl;
106   }
107 }
108 
109 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
110 
111 void RunAction::BeginWorker(const G4Run* run)
112 {
113   if (fDebug) {
114     G4cout << "===================================" << G4endl;
115     G4cout << "================ RunAction::BeginWorker" << G4endl;
116     PrintRunInfo(run);
117     G4cout << "===================================" << G4endl;
118   }
119   if (fInitialized == false) InitializeWorker(run);
120 
121   CreateNtuple();
122 }
123 
124 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
125 
126 void RunAction::EndMaster(const G4Run*) {}
127 
128 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
129 
130 void RunAction::EndWorker(const G4Run* run)
131 {
132   if (fDebug) {
133     PrintRunInfo(run);
134   }
135 
136   G4int nofEvents = run->GetNumberOfEvent();
137   if (nofEvents == 0) {
138     if (fDebug) {
139       G4cout << "================ NO EVENTS TREATED IN THIS RUN ==> Exit" << G4endl;
140     }
141     return;
142   }
143 
144   ///////////////
145   // Write Ntuple
146   //
147   WriteNtuple();
148 }
149 
150 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
151 
152 void RunAction::InitializeWorker(const G4Run*)
153 {
154   // Initialize worker here
155   // example: you want to retrieve pointers to other user actions
156   fInitialized = true;
157 }
158 
159 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
160 
161 void RunAction::CreateNtuple()
162 {
163   // Book histograms, ntuple
164 
165   // Create analysis manager
166 
167   CommandLineParser* parser = CommandLineParser::GetParser();
168   Command* command(0);
169   if ((command = parser->GetCommandIfActive("-out")) == 0) return;
170 
171   G4cout << "##### Create analysis manager "
172          << "  " << this << G4endl;
173   G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
174   analysisManager->SetDefaultFileType("root");
175   //  if(!analysisManager->IsActive()) {return; }
176 
177   G4cout << "Using " << analysisManager->GetType() << " analysis manager" << G4endl;
178 
179   // Create directories
180 
181   // analysisManager->SetHistoDirectoryName("histograms");
182   // analysisManager->SetNtupleDirectoryName("ntuple");
183   analysisManager->SetVerboseLevel(1);
184 
185   // Open an output file
186   G4String fileName;
187   if (command->GetOption().empty() == false) {
188     fileName = command->GetOption();
189   }
190   else {
191     fileName = "wholeNuclearDNA";
192     //   fileName = command->GetDefaultOption(); // should work as well
193   }
194   analysisManager->OpenFile(fileName);
195 
196   // Creating ntuple
197   analysisManager->CreateNtuple("ntuple", "geom_dna");
198   analysisManager->CreateNtupleDColumn("flagParticle");
199   analysisManager->CreateNtupleDColumn("flagProcess");
200   analysisManager->CreateNtupleDColumn("flagVolume");
201   analysisManager->CreateNtupleDColumn("x");
202   analysisManager->CreateNtupleDColumn("y");
203   analysisManager->CreateNtupleDColumn("z");
204   analysisManager->CreateNtupleDColumn("edep");
205   analysisManager->CreateNtupleDColumn("stepLength");
206 
207   analysisManager->FinishNtuple();
208 }
209 
210 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
211 
212 void RunAction::WriteNtuple()
213 {
214   CommandLineParser* parser = CommandLineParser::GetParser();
215   Command* commandLine(0);
216   if ((commandLine = parser->GetCommandIfActive("-out")) == 0) return;
217 
218   // print histogram statistics
219   //
220   G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
221   //  if(!analysisManager->IsActive()) {return; }
222 
223   // save histograms
224   //
225   analysisManager->Write();
226   analysisManager->CloseFile();
227   analysisManager->Clear();
228 }
229 
230 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
231 
232 void RunAction::PrintRunInfo(const G4Run* run)
233 {
234   G4cout << "================ Run is = " << run->GetRunID() << G4endl;
235   G4cout << "================ Run type is = " << G4RunManager::GetRunManager()->GetRunManagerType()
236          << G4endl;
237   G4cout << "================ Event processed = " << run->GetNumberOfEventToBeProcessed() << G4endl;
238   G4cout << "================ Nevent = " << run->GetNumberOfEvent() << G4endl;
239 }
240 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
241