Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/neuron/src/PhysicsList.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // and papers
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
 33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //
 35 // -------------------------------------------------------------------
 36 // November 2016
 37 // -------------------------------------------------------------------
 38 //
 39 //
 40 /// \file PhysicsList.cc
 41 /// \brief Implementation of the PhysicsList class
 42 
 43 #include "PhysicsList.hh"
 44 
 45 #include "CommandLineParser.hh"
 46 
 47 #include "G4EmParameters.hh"
 48 #include "G4SystemOfUnits.hh"
 49 // for discrete physics constructors!
 50 #include "G4EmDNAChemistry.hh"
 51 #include "G4EmDNAChemistry_option1.hh"
 52 #include "G4EmDNAPhysics.hh"
 53 #include "G4EmDNAPhysics_option1.hh"
 54 #include "G4EmDNAPhysics_option2.hh"
 55 #include "G4EmDNAPhysics_option3.hh"
 56 #include "G4EmDNAPhysics_option4.hh"
 57 #include "G4EmDNAPhysics_option5.hh"
 58 #include "G4EmDNAPhysics_option6.hh"
 59 #include "G4EmDNAPhysics_option7.hh"
 60 #include "G4EmDNAPhysics_option8.hh"
 61 // for condensed physics constructors!
 62 #include "G4EmLivermorePhysics.hh"
 63 #include "G4EmPenelopePhysics.hh"
 64 #include "G4EmStandardPhysics.hh"
 65 #include "G4EmStandardPhysics_option3.hh"
 66 #include "G4EmStandardPhysics_option4.hh"
 67 // for hadronic physics constructors!
 68 #include "G4DecayPhysics.hh"
 69 #include "G4EmDNAPhysicsActivator.hh"
 70 #include "G4EmExtraPhysics.hh"
 71 #include "G4HadronElasticPhysics.hh"
 72 #include "G4HadronPhysicsQGSP_BIC.hh"
 73 #include "G4IonPhysics.hh"
 74 #include "G4NeutronTrackingCut.hh"
 75 #include "G4RadioactiveDecayPhysics.hh"
 76 #include "G4StoppingPhysics.hh"
 77 
 78 using namespace G4DNAPARSER;
 79 
 80 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 81 
 82 PhysicsList::PhysicsList()
 83   : G4VModularPhysicsList(),
 84     fEmPhysicsList(nullptr),
 85     fDNAActivator(nullptr),
 86     fEmDNAChemistryList(nullptr),
 87     fEmDNAChemistryList1(nullptr),
 88     fEmName(""),
 89     fHadronic(false)
 90 {
 91   G4double currentDefaultCut = 1. * micrometer;
 92   SetDefaultCutValue(currentDefaultCut);
 93   SetVerboseLevel(1);
 94   // fixe lower limit for cut
 95   G4ProductionCutsTable::GetProductionCutsTable()->SetEnergyRange(100 * eV, 1 * GeV);
 96 
 97   // Options of combination Geant4-DNA processes (Physics/Chemistry)
 98   // with Standard and Hadronic Physics:
 99 
100   // a) DNAphysics and Livermore physics inside and outside neuron
101   G4cout << "Livermore + DNAphysics is activated!" << G4endl;
102   RegisterConstructor("emlivermore");
103 
104   // 'G4EmParameters' works together with 'G4EmDNAPhysicsActivator'
105   // VI: in this example Livermore is a default in any way
106   //     DNA option4 is the default configuration as well
107   fDNAActivator = new G4EmDNAPhysicsActivator();
108   /*
109   G4EmParameters::Instance()->AddDNA("Soma","Opt4");
110   G4EmParameters::Instance()->AddDNA("Dendrites","Opt4");
111   G4EmParameters::Instance()->AddDNA("Axon","Opt4");
112   */
113   //  b) Livermore + DNAPhysics + DNAChemistry
114   if (CommandLineParser::GetParser()->GetCommandIfActive("-dnachemON")) {
115     G4cout << "DNAChemistry is activated!" << G4endl;
116     RegisterPhysics(new G4EmDNAChemistry());
117   }
118 
119   //  d) "QGSP_BIC_EMY" package from hadrontherapy advanced example
120   if (CommandLineParser::GetParser()->GetCommandIfActive("-dnahad")) {
121     G4cout << "QGSP_BIC is activated!" << G4endl;
122     RegisterConstructor("QGSP_BIC");
123     fHadronic = true;
124   }
125 }
126 
127 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
128 
129 PhysicsList::~PhysicsList() {}
130 
131 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
132 
133 void PhysicsList::ConstructParticle()
134 {
135   if (fEmPhysicsList) {
136     fEmPhysicsList->ConstructParticle();
137   }
138   if (fDNAActivator) {
139     fDNAActivator->ConstructParticle();
140   }
141   if (fEmDNAChemistryList) {
142     fEmDNAChemistryList->ConstructParticle();
143   }
144   if (fEmDNAChemistryList1) {
145     fEmDNAChemistryList1->ConstructParticle();
146   }
147   G4VModularPhysicsList::ConstructParticle();
148 }
149 
150 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
151 
152 void PhysicsList::ConstructProcess()
153 {
154   if (fEmPhysicsList) {
155     fEmPhysicsList->ConstructProcess();
156   }
157   if (fDNAActivator) {
158     fDNAActivator->ConstructProcess();
159   }
160   if (fEmDNAChemistryList) {
161     fEmDNAChemistryList->ConstructProcess();
162   }
163   if (fEmDNAChemistryList1) {
164     fEmDNAChemistryList1->ConstructProcess();
165   }
166   G4VModularPhysicsList::ConstructProcess();
167 }
168 
169 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
170 
171 void PhysicsList::RegisterConstructor(const G4String& name)
172 {
173   if (name == fEmName) {
174     return;
175   }
176   if (name == "emstandard_opt0") {
177     fEmName = name;
178     delete fEmPhysicsList;
179     fEmPhysicsList = new G4EmStandardPhysics();
180   }
181   else if (name == "emstandard_opt3") {
182     fEmName = name;
183     delete fEmPhysicsList;
184     fEmPhysicsList = new G4EmStandardPhysics_option3();
185   }
186   else if (name == "emstandard_opt4") {
187     fEmName = name;
188     delete fEmPhysicsList;
189     fEmPhysicsList = new G4EmStandardPhysics_option4();
190   }
191   else if (name == "empenelope") {
192     fEmName = name;
193     delete fEmPhysicsList;
194     fEmPhysicsList = new G4EmPenelopePhysics();
195   }
196   else if (name == "emlivermore") {
197     fEmName = name;
198     delete fEmPhysicsList;
199     fEmPhysicsList = new G4EmLivermorePhysics();
200   }
201   else if (name == "G4EmDNAPhysics") {
202     delete fEmPhysicsList;
203     fEmPhysicsList = new G4EmDNAPhysics(verboseLevel);
204     fEmName = name;
205   }
206   else if (name == "G4EmDNAPhysics_option1") {
207     delete fEmPhysicsList;
208     fEmPhysicsList = new G4EmDNAPhysics_option1(verboseLevel);
209     fEmName = name;
210   }
211   else if (name == "G4EmDNAPhysics_option2") {
212     delete fEmPhysicsList;
213     fEmPhysicsList = new G4EmDNAPhysics_option2(verboseLevel);
214     fEmName = name;
215   }
216   else if (name == "G4EmDNAPhysics_option3") {
217     delete fEmPhysicsList;
218     fEmPhysicsList = new G4EmDNAPhysics_option3(verboseLevel);
219     fEmName = name;
220   }
221   else if (name == "G4EmDNAPhysics_option4") {
222     delete fEmPhysicsList;
223     fEmPhysicsList = new G4EmDNAPhysics_option4(verboseLevel);
224     fEmName = name;
225   }
226   else if (name == "G4EmDNAPhysics_option5") {
227     delete fEmPhysicsList;
228     fEmPhysicsList = new G4EmDNAPhysics_option5(verboseLevel);
229     fEmName = name;
230   }
231   else if (name == "G4EmDNAPhysics_option6") {
232     delete fEmPhysicsList;
233     fEmPhysicsList = new G4EmDNAPhysics_option6(verboseLevel);
234     fEmName = name;
235   }
236   else if (name == "G4EmDNAPhysics_option7") {
237     delete fEmPhysicsList;
238     fEmPhysicsList = new G4EmDNAPhysics_option7(verboseLevel);
239     fEmName = name;
240   }
241   else if (name == "G4EmDNAPhysics_option8") {
242     delete fEmPhysicsList;
243     fEmPhysicsList = new G4EmDNAPhysics_option8(verboseLevel);
244     fEmName = name;
245   }
246   else if (name == "QGSP_BIC") {
247     if (fHadronic) {
248       return;
249     }
250     // Hadron Elastic Physics
251     RegisterConstructor("G4HadronElasticPhysics");
252     // Hadron Inelastic Physics
253     RegisterConstructor("G4HadronPhysicsQGSP_BIC");
254     // Stopping
255     RegisterConstructor("G4StoppingPhysics");
256     // Ion Physics
257     RegisterConstructor("G4IonBinaryCascadePhysics");
258     // Gamma-Lepto nuclear
259     RegisterConstructor("G4EmExtraPhysics");
260     // Limiters
261     RegisterConstructor("G4NeutronTrackingCut");
262     // Decay
263     RegisterConstructor("G4DecayPhysics");
264     // Radioactive decay
265     RegisterConstructor("G4RadioactiveDecayPhysics");
266   }
267   else if (name == "G4EmDNAChemistry") {
268     if (fEmDNAChemistryList || fEmDNAChemistryList1) {
269       return;
270     }
271     fEmDNAChemistryList = new G4EmDNAChemistry();
272   }
273   else if (name == "G4EmDNAChemistry_option1") {
274     if (fEmDNAChemistryList || fEmDNAChemistryList1) {
275       return;
276     }
277     fEmDNAChemistryList1 = new G4EmDNAChemistry_option1();
278   }
279   else {
280     G4cout << "PhysicsList::RegisterConstructor: <" << name << ">"
281            << " fails - name is not defined" << G4endl;
282   }
283 }
284 
285 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
286