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Geant4/examples/extended/medical/dna/microdosimetry/src/SteppingAction.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publications:
 29 // Med. Phys. 45, (2018) e722-e739
 30 // Phys. Med. 31 (2015) 861-874
 31 // Med. Phys. 37 (2010) 4692-4708
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
 33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //
 35 //
 36 /// \file SteppingAction.cc
 37 /// \brief Implementation of the SteppingAction class
 38 
 39 #include "SteppingAction.hh"
 40 
 41 #include "G4Alpha.hh"
 42 #include "G4AnalysisManager.hh"
 43 #include "G4DNAGenericIonsManager.hh"
 44 #include "G4Electron.hh"
 45 #include "G4EventManager.hh"
 46 #include "G4Gamma.hh"
 47 #include "G4Proton.hh"
 48 #include "G4SystemOfUnits.hh"
 49 
 50 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 51 
 52 SteppingAction::SteppingAction() : G4UserSteppingAction() {}
 53 
 54 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 55 
 56 SteppingAction::~SteppingAction() {}
 57 
 58 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 59 
 60 void SteppingAction::UserSteppingAction(const G4Step* step)
 61 {
 62   // Protection
 63   if (!step->GetPostStepPoint()) return;
 64   if (!step->GetPostStepPoint()->GetProcessDefinedStep()) return;
 65 
 66   //
 67   G4double flagParticle = -1.;
 68   G4double flagProcess = -1.;
 69   G4double x, y, z, xp, yp, zp;
 70 
 71   // Particle identification
 72 
 73   // The following method avoids the usage of string comparison
 74 
 75   G4ParticleDefinition* partDef = step->GetTrack()->GetDynamicParticle()->GetDefinition();
 76 
 77   if (partDef == G4Gamma::GammaDefinition()) flagParticle = 0;
 78 
 79   if (partDef == G4Electron::ElectronDefinition()) flagParticle = 1;
 80 
 81   if (partDef == G4Proton::ProtonDefinition()) flagParticle = 2;
 82 
 83   if (partDef == G4Alpha::AlphaDefinition()) flagParticle = 4;
 84 
 85   G4DNAGenericIonsManager* instance;
 86   instance = G4DNAGenericIonsManager::Instance();
 87 
 88   // Usage example
 89   /*
 90   G4ParticleDefinition* protonDef = G4Proton::ProtonDefinition();
 91   G4ParticleDefinition* hydrogenDef = instance->GetIon("hydrogen");
 92   G4ParticleDefinition* alphaPlusPlusDef = instance->GetIon("alpha++");
 93   G4ParticleDefinition* alphaPlusDef = instance->GetIon("alpha+");
 94   G4ParticleDefinition* heliumDef = instance->GetIon("helium");
 95   */
 96 
 97   if (partDef == instance->GetIon("hydrogen")) flagParticle = 3;
 98 
 99   if (partDef == instance->GetIon("alpha+")) flagParticle = 5;
100 
101   if (partDef == instance->GetIon("helium")) flagParticle = 6;
102 
103   // Alternative method (based on string comparison)
104 
105   /*
106   const G4String& particleName = step->GetTrack()->GetDynamicParticle()->
107       GetDefinition()->GetParticleName();
108 
109   if (particleName == "gamma")         flagParticle = 0;
110   else if (particleName == "e-")       flagParticle = 1;
111   else if (particleName == "proton")   flagParticle = 2;
112   else if (particleName == "hydrogen") flagParticle = 3;
113   else if (particleName == "alpha")    flagParticle = 4;
114   else if (particleName == "alpha+")   flagParticle = 5;
115   else if (particleName == "helium")   flagParticle = 6;
116   */
117 
118   // Process identification
119 
120   // Process sub-types are listed in G4PhysicsListHelper.cc
121   // or in Geant4-DNA process class implementation files (*.cc)
122 
123   G4StepPoint* preStep = step->GetPreStepPoint();
124   G4StepPoint* postStep = step->GetPostStepPoint();
125   G4int procID = postStep->GetProcessDefinedStep()->GetProcessSubType();
126 
127   const G4String& processName = postStep->GetProcessDefinedStep()->GetProcessName();
128 
129   if (processName == "Capture") flagProcess = 1;
130   // (no subType and procID exists at the moment for this process)
131 
132   else if (flagParticle == 0) {
133     if (procID == 12)
134       flagProcess = 81;
135     else if (procID == 13)
136       flagProcess = 82;
137     else if (procID == 14)
138       flagProcess = 83;
139     else if (procID == 11)
140       flagProcess = 84;
141   }
142 
143   else if (flagParticle == 1) {
144     if (procID == 58)
145       flagProcess = 10;
146     else if (procID == 51)
147       flagProcess = 11;
148     else if (procID == 52)
149       flagProcess = 12;
150     else if (procID == 53)
151       flagProcess = 13;
152     else if (procID == 55)
153       flagProcess = 14;
154     else if (procID == 54)
155       flagProcess = 15;
156     else if (procID == 10)
157       flagProcess = 110;
158     else if (procID == 1)
159       flagProcess = 120;
160     else if (procID == 2)
161       flagProcess = 130;
162   }
163 
164   else if (flagParticle == 2) {
165     if (procID == 51)
166       flagProcess = 21;
167     else if (procID == 52)
168       flagProcess = 22;
169     else if (procID == 53)
170       flagProcess = 23;
171     else if (procID == 56)
172       flagProcess = 24;
173     else if (procID == 10)
174       flagProcess = 210;
175     else if (procID == 1)
176       flagProcess = 220;
177     else if (procID == 2)
178       flagProcess = 230;
179     else if (procID == 8)
180       flagProcess = 240;
181   }
182 
183   else if (flagParticle == 3) {
184     if (procID == 51)
185       flagProcess = 31;
186     else if (procID == 52)
187       flagProcess = 32;
188     else if (procID == 53)
189       flagProcess = 33;
190     else if (procID == 57)
191       flagProcess = 35;
192   }
193 
194   else if (flagParticle == 4) {
195     if (procID == 51)
196       flagProcess = 41;
197     else if (procID == 52)
198       flagProcess = 42;
199     else if (procID == 53)
200       flagProcess = 43;
201     else if (procID == 56)
202       flagProcess = 44;
203     else if (procID == 10)
204       flagProcess = 410;
205     else if (procID == 1)
206       flagProcess = 420;
207     else if (procID == 2)
208       flagProcess = 430;
209     else if (procID == 8)
210       flagProcess = 440;
211   }
212 
213   else if (flagParticle == 5) {
214     if (procID == 51)
215       flagProcess = 51;
216     else if (procID == 52)
217       flagProcess = 52;
218     else if (procID == 53)
219       flagProcess = 53;
220     else if (procID == 56)
221       flagProcess = 54;
222     else if (procID == 57)
223       flagProcess = 55;
224     else if (procID == 10)
225       flagProcess = 510;
226     else if (procID == 1)
227       flagProcess = 520;
228     else if (procID == 2)
229       flagProcess = 530;
230     else if (procID == 8)
231       flagProcess = 540;
232   }
233 
234   else if (flagParticle == 6) {
235     if (procID == 51)
236       flagProcess = 61;
237     else if (procID == 52)
238       flagProcess = 62;
239     else if (procID == 53)
240       flagProcess = 63;
241     else if (procID == 57)
242       flagProcess = 65;
243   }
244 
245   else if (processName == "GenericIon_G4DNAIonisation")
246     flagProcess = 73;
247   else if (processName == "msc")
248     flagProcess = 710;
249   else if (processName == "CoulombScat")
250     flagProcess = 720;
251   else if (processName == "ionIoni")
252     flagProcess = 730;
253   else if (processName == "nuclearStopping")
254     flagProcess = 740;
255   // (for all GenericIons)
256 
257   // Alternatively, using process names
258 
259   /*
260   else if (processName=="e-_G4DNAElectronSolvation")    flagProcess =10;
261   else if (processName=="e-_G4DNAElastic")              flagProcess =11;
262   else if (processName=="e-_G4DNAExcitation")           flagProcess =12;
263   else if (processName=="e-_G4DNAIonisation")           flagProcess =13;
264   else if (processName=="e-_G4DNAAttachment")           flagProcess =14;
265   else if (processName=="e-_G4DNAVibExcitation")        flagProcess =15;
266 
267   else if (processName=="proton_G4DNAElastic")          flagProcess =21;
268   else if (processName=="proton_G4DNAExcitation")       flagProcess =22;
269   else if (processName=="proton_G4DNAIonisation")       flagProcess =23;
270   else if (processName=="proton_G4DNAChargeDecrease")   flagProcess =24;
271 
272   else if (processName=="hydrogen_G4DNAElastic")        flagProcess =31;
273   else if (processName=="hydrogen_G4DNAExcitation")     flagProcess =32;
274   else if (processName=="hydrogen_G4DNAIonisation")     flagProcess =33;
275   else if (processName=="hydrogen_G4DNAChargeIncrease") flagProcess =35;
276 
277   else if (processName=="alpha_G4DNAElastic")           flagProcess =41;
278   else if (processName=="alpha_G4DNAExcitation")        flagProcess =42;
279   else if (processName=="alpha_G4DNAIonisation")        flagProcess =43;
280   else if (processName=="alpha_G4DNAChargeDecrease")    flagProcess =44;
281 
282   else if (processName=="alpha+_G4DNAElastic")          flagProcess =51;
283   else if (processName=="alpha+_G4DNAExcitation")       flagProcess =52;
284   else if (processName=="alpha+_G4DNAIonisation")       flagProcess =53;
285   else if (processName=="alpha+_G4DNAChargeDecrease")   flagProcess =54;
286   else if (processName=="alpha+_G4DNAChargeIncrease")   flagProcess =55;
287 
288   else if (processName=="helium_G4DNAElastic")          flagProcess =61;
289   else if (processName=="helium_G4DNAExcitation")       flagProcess =62;
290   else if (processName=="helium_G4DNAIonisation")       flagProcess =63;
291   else if (processName=="helium_G4DNAChargeIncrease")   flagProcess =65;
292 
293   else if (processName=="GenericIon_G4DNAIonisation")   flagProcess =73;
294 
295   */
296 
297   if (processName != "Transportation") {
298     x = preStep->GetPosition().x() / nanometer;
299     y = preStep->GetPosition().y() / nanometer;
300     z = preStep->GetPosition().z() / nanometer;
301 
302     xp = postStep->GetPosition().x() / nanometer;
303     yp = postStep->GetPosition().y() / nanometer;
304     zp = postStep->GetPosition().z() / nanometer;
305 
306     // get analysis manager
307 
308     G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
309 
310     // fill ntuple
311     analysisManager->FillNtupleDColumn(0, flagParticle);
312     analysisManager->FillNtupleDColumn(1, flagProcess);
313     analysisManager->FillNtupleDColumn(2, xp);
314     analysisManager->FillNtupleDColumn(3, yp);
315     analysisManager->FillNtupleDColumn(4, zp);
316     analysisManager->FillNtupleDColumn(5, step->GetTotalEnergyDeposit() / eV);
317 
318     analysisManager->FillNtupleDColumn(
319       6, std::sqrt((x - xp) * (x - xp) + (y - yp) * (y - yp) + (z - zp) * (z - zp)));
320 
321     analysisManager->FillNtupleDColumn(
322       7, (preStep->GetKineticEnergy() - postStep->GetKineticEnergy()) / eV);
323 
324     analysisManager->FillNtupleDColumn(8, preStep->GetKineticEnergy() / eV);
325 
326     analysisManager->FillNtupleDColumn(9, preStep->GetMomentumDirection()
327                                             * postStep->GetMomentumDirection());
328 
329     analysisManager->FillNtupleIColumn(
330       10, G4EventManager::GetEventManager()->GetConstCurrentEvent()->GetEventID());
331 
332     analysisManager->FillNtupleIColumn(11, step->GetTrack()->GetTrackID());
333 
334     analysisManager->FillNtupleIColumn(12, step->GetTrack()->GetParentID());
335 
336     analysisManager->FillNtupleIColumn(13, step->GetTrack()->GetCurrentStepNumber());
337 
338     analysisManager->AddNtupleRow();
339   }
340 }
341