Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/dnaphysics/src/SteppingAction.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publications:
 29 // Med. Phys. 45 (2018) e722-e739
 30 // Phys. Med. 31 (2015) 861-874
 31 // Med. Phys. 37 (2010) 4692-4708
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
 33 //
 34 // The Geant4-DNA web site is available at http://geant4-dna.org
 35 //
 36 /// \file SteppingAction.cc
 37 /// \brief Implementation of the SteppingAction class
 38 
 39 #include "SteppingAction.hh"
 40 
 41 #include "DetectorConstruction.hh"
 42 #include "PrimaryGeneratorAction.hh"
 43 #include "RunAction.hh"
 44 
 45 #include "G4Alpha.hh"
 46 #include "G4AnalysisManager.hh"
 47 #include "G4DNAGenericIonsManager.hh"
 48 #include "G4Electron.hh"
 49 #include "G4Event.hh"
 50 #include "G4EventManager.hh"
 51 #include "G4Gamma.hh"
 52 #include "G4Proton.hh"
 53 #include "G4SteppingManager.hh"
 54 #include "G4SystemOfUnits.hh"
 55 
 56 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 57 
 58 SteppingAction::SteppingAction() : G4UserSteppingAction() {}
 59 
 60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 61 
 62 SteppingAction::~SteppingAction() {}
 63 
 64 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 65 
 66 void SteppingAction::UserSteppingAction(const G4Step* step)
 67 {
 68   // Protection
 69   if (!step->GetPostStepPoint()) return;
 70   if (!step->GetPostStepPoint()->GetProcessDefinedStep()) return;
 71 
 72   //
 73   G4double flagParticle = -1.;
 74   G4double flagProcess = -1.;
 75   G4double x, y, z, xp, yp, zp;
 76 
 77   // Particle identification
 78 
 79   // The following method avoids the usage of string comparison
 80   G4ParticleDefinition* partDef = step->GetTrack()->GetDynamicParticle()->GetDefinition();
 81 
 82   if (partDef == G4Gamma::GammaDefinition()) flagParticle = 0;
 83 
 84   if (partDef == G4Electron::ElectronDefinition()) flagParticle = 1;
 85 
 86   if (partDef == G4Proton::ProtonDefinition()) flagParticle = 2;
 87 
 88   if (partDef == G4Alpha::AlphaDefinition()) flagParticle = 4;
 89 
 90   G4DNAGenericIonsManager* instance;
 91   instance = G4DNAGenericIonsManager::Instance();
 92 
 93   // Usage example
 94   /*
 95   G4ParticleDefinition* protonDef = G4Proton::ProtonDefinition();
 96   G4ParticleDefinition* hydrogenDef = instance->GetIon("hydrogen");
 97   G4ParticleDefinition* alphaPlusPlusDef = instance->GetIon("alpha++");
 98   G4ParticleDefinition* alphaPlusDef = instance->GetIon("alpha+");
 99   G4ParticleDefinition* heliumDef = instance->GetIon("helium");
100   */
101 
102   if (partDef == instance->GetIon("hydrogen")) flagParticle = 3;
103 
104   if (partDef == instance->GetIon("alpha+")) flagParticle = 5;
105 
106   if (partDef == instance->GetIon("helium")) flagParticle = 6;
107 
108   // Alternative method (based on string comparison)
109 
110   /*
111   const G4String& particleName = step->GetTrack()->GetDynamicParticle()->
112       GetDefinition()->GetParticleName();
113 
114   if (particleName == "gamma")         flagParticle = 0;
115   else if (particleName == "e-")       flagParticle = 1;
116   else if (particleName == "proton")   flagParticle = 2;
117   else if (particleName == "hydrogen") flagParticle = 3;
118   else if (particleName == "alpha")    flagParticle = 4;
119   else if (particleName == "alpha+")   flagParticle = 5;
120   else if (particleName == "helium")   flagParticle = 6;
121   */
122 
123   // Process identification
124 
125   // Process sub-types are listed in G4PhysicsListHelper.cc
126   // or in Geant4-DNA process class implementation files (*.cc)
127 
128   G4StepPoint* preStep = step->GetPreStepPoint();
129   G4StepPoint* postStep = step->GetPostStepPoint();
130   G4int procID = postStep->GetProcessDefinedStep()->GetProcessSubType();
131 
132   const G4String& processName = postStep->GetProcessDefinedStep()->GetProcessName();
133 
134   if (processName == "Capture") flagProcess = 1;
135   // (no subType and procID exists at the moment for this process)
136   // used to kill ions below tracking cut
137 
138   else if (flagParticle == 0) {
139     if (procID == 12)
140       flagProcess = 81;
141     else if (procID == 13)
142       flagProcess = 82;
143     else if (procID == 14)
144       flagProcess = 83;
145     else if (procID == 11)
146       flagProcess = 84;
147   }
148 
149   else if (flagParticle == 1) {
150     if (procID == 58)
151       flagProcess = 10;
152     else if (procID == 51)
153       flagProcess = 11;
154     else if (procID == 52)
155       flagProcess = 12;
156     else if (procID == 53)
157       flagProcess = 13;
158     else if (procID == 55)
159       flagProcess = 14;
160     else if (procID == 54)
161       flagProcess = 15;
162     else if (procID == 10)
163       flagProcess = 110;
164     else if (procID == 1)
165       flagProcess = 120;
166     else if (procID == 2)
167       flagProcess = 130;
168   }
169 
170   else if (flagParticle == 2) {
171     if (procID == 51)
172       flagProcess = 21;
173     else if (procID == 52)
174       flagProcess = 22;
175     else if (procID == 53)
176       flagProcess = 23;
177     else if (procID == 56)
178       flagProcess = 24;
179     else if (procID == 10)
180       flagProcess = 210;
181     else if (procID == 1)
182       flagProcess = 220;
183     else if (procID == 2)
184       flagProcess = 230;
185     else if (procID == 8)
186       flagProcess = 240;
187   }
188 
189   else if (flagParticle == 3) {
190     if (procID == 51)
191       flagProcess = 31;
192     else if (procID == 52)
193       flagProcess = 32;
194     else if (procID == 53)
195       flagProcess = 33;
196     else if (procID == 57)
197       flagProcess = 35;
198   }
199 
200   else if (flagParticle == 4) {
201     if (procID == 51)
202       flagProcess = 41;
203     else if (procID == 52)
204       flagProcess = 42;
205     else if (procID == 53)
206       flagProcess = 43;
207     else if (procID == 56)
208       flagProcess = 44;
209     else if (procID == 10)
210       flagProcess = 410;
211     else if (procID == 1)
212       flagProcess = 420;
213     else if (procID == 2)
214       flagProcess = 430;
215     else if (procID == 8)
216       flagProcess = 440;
217   }
218 
219   else if (flagParticle == 5) {
220     if (procID == 51)
221       flagProcess = 51;
222     else if (procID == 52)
223       flagProcess = 52;
224     else if (procID == 53)
225       flagProcess = 53;
226     else if (procID == 56)
227       flagProcess = 54;
228     else if (procID == 57)
229       flagProcess = 55;
230     else if (procID == 10)
231       flagProcess = 510;
232     else if (procID == 1)
233       flagProcess = 520;
234     else if (procID == 2)
235       flagProcess = 530;
236     else if (procID == 8)
237       flagProcess = 540;
238   }
239 
240   else if (flagParticle == 6) {
241     if (procID == 51)
242       flagProcess = 61;
243     else if (procID == 52)
244       flagProcess = 62;
245     else if (procID == 53)
246       flagProcess = 63;
247     else if (procID == 57)
248       flagProcess = 65;
249   }
250 
251   else if (processName == "GenericIon_G4DNAIonisation")
252     flagProcess = 73;
253   else if (processName == "msc")
254     flagProcess = 710;
255   else if (processName == "CoulombScat")
256     flagProcess = 720;
257   else if (processName == "ionIoni")
258     flagProcess = 730;
259   else if (processName == "nuclearStopping")
260     flagProcess = 740;
261   // (for all GenericIons)
262 
263   // Alternatively, using process names
264 
265   /*
266   else if (processName=="e-_G4DNAElectronSolvation")    flagProcess =10;
267   else if (processName=="e-_G4DNAElastic")              flagProcess =11;
268   else if (processName=="e-_G4DNAExcitation")           flagProcess =12;
269   else if (processName=="e-_G4DNAIonisation")           flagProcess =13;
270   else if (processName=="e-_G4DNAAttachment")           flagProcess =14;
271   else if (processName=="e-_G4DNAVibExcitation")        flagProcess =15;
272 
273   else if (processName=="proton_G4DNAElastic")          flagProcess =21;
274   else if (processName=="proton_G4DNAExcitation")       flagProcess =22;
275   else if (processName=="proton_G4DNAIonisation")       flagProcess =23;
276   else if (processName=="proton_G4DNAChargeDecrease")   flagProcess =24;
277 
278   else if (processName=="hydrogen_G4DNAElastic")        flagProcess =31;
279   else if (processName=="hydrogen_G4DNAExcitation")     flagProcess =32;
280   else if (processName=="hydrogen_G4DNAIonisation")     flagProcess =33;
281   else if (processName=="hydrogen_G4DNAChargeIncrease") flagProcess =35;
282 
283   else if (processName=="alpha_G4DNAElastic")           flagProcess =41;
284   else if (processName=="alpha_G4DNAExcitation")        flagProcess =42;
285   else if (processName=="alpha_G4DNAIonisation")        flagProcess =43;
286   else if (processName=="alpha_G4DNAChargeDecrease")    flagProcess =44;
287 
288   else if (processName=="alpha+_G4DNAElastic")          flagProcess =51;
289   else if (processName=="alpha+_G4DNAExcitation")       flagProcess =52;
290   else if (processName=="alpha+_G4DNAIonisation")       flagProcess =53;
291   else if (processName=="alpha+_G4DNAChargeDecrease")   flagProcess =54;
292   else if (processName=="alpha+_G4DNAChargeIncrease")   flagProcess =55;
293 
294   else if (processName=="helium_G4DNAElastic")          flagProcess =61;
295   else if (processName=="helium_G4DNAExcitation")       flagProcess =62;
296   else if (processName=="helium_G4DNAIonisation")       flagProcess =63;
297   else if (processName=="helium_G4DNAChargeIncrease")   flagProcess =65;
298 
299   else if (processName=="GenericIon_G4DNAIonisation")   flagProcess =73;
300 
301   */
302 
303   if (processName != "Transportation") {
304     x = preStep->GetPosition().x() / nanometer;
305     y = preStep->GetPosition().y() / nanometer;
306     z = preStep->GetPosition().z() / nanometer;
307 
308     xp = postStep->GetPosition().x() / nanometer;
309     yp = postStep->GetPosition().y() / nanometer;
310     zp = postStep->GetPosition().z() / nanometer;
311 
312     // get analysis manager
313 
314     G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
315 
316     // fill ntuple
317     analysisManager->FillNtupleDColumn(0, flagParticle);
318     analysisManager->FillNtupleDColumn(1, flagProcess);
319     analysisManager->FillNtupleDColumn(2, xp);
320     analysisManager->FillNtupleDColumn(3, yp);
321     analysisManager->FillNtupleDColumn(4, zp);
322     analysisManager->FillNtupleDColumn(5, step->GetTotalEnergyDeposit() / eV);
323 
324     analysisManager->FillNtupleDColumn(
325       6, std::sqrt((x - xp) * (x - xp) + (y - yp) * (y - yp) + (z - zp) * (z - zp)));
326 
327     analysisManager->FillNtupleDColumn(
328       7, (preStep->GetKineticEnergy() - postStep->GetKineticEnergy()) / eV);
329 
330     analysisManager->FillNtupleDColumn(8, preStep->GetKineticEnergy() / eV);
331 
332     analysisManager->FillNtupleDColumn(9, preStep->GetMomentumDirection()
333                                             * postStep->GetMomentumDirection());
334 
335     analysisManager->FillNtupleIColumn(
336       10, G4EventManager::GetEventManager()->GetConstCurrentEvent()->GetEventID());
337 
338     analysisManager->FillNtupleIColumn(11, step->GetTrack()->GetTrackID());
339 
340     analysisManager->FillNtupleIColumn(12, step->GetTrack()->GetParentID());
341 
342     analysisManager->FillNtupleIColumn(13, step->GetTrack()->GetCurrentStepNumber());
343 
344     analysisManager->AddNtupleRow();
345   }
346 }
347