| Geant4 Cross Reference |
1 //
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4 // * *
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17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
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24 // ********************************************************************
25 //
26 #ifndef DicomFileMgr__HH
27 #define DicomFileMgr__HH
28 #include "dcmtk/dcmdata/dcfilefo.h"
29
30 #include "globals.hh"
31
32 #include <map>
33 #include <vector>
34 class DicomVFile;
35 class DicomFileCT;
36 class DicomFileStructure;
37 class DicomFilePlan;
38 class DicomFilePET;
39 class DcmDataset;
40
41 // typedef std::multimap<OFString,DicomVFile*> msd;
42 typedef std::map<G4double, DicomFileCT*> mdct;
43 typedef std::map<G4double, DicomFilePET*> mdpet;
44 enum VerbLevel
45 {
46 silentVerb = -1,
47 errorVerb = 0,
48 warningVerb = 1,
49 infoVerb = 2,
50 debugVerb = 3,
51 testVerb = 4
52 };
53
54 class DicomFileMgr
55 {
56 public:
57 static DicomFileMgr* GetInstance();
58 ~DicomFileMgr() {};
59
60 private:
61 DicomFileMgr();
62
63 public:
64 std::vector<DicomFileStructure*> GetStructFiles() const { return theStructFiles; }
65
66 void SetCompression(G4String fComp);
67 void AddFile(G4String fComp);
68 void AddMaterial(std::vector<G4String> data);
69 void AddMaterialDensity(std::vector<G4String> data);
70 void AddCT2Density(std::vector<G4String> data);
71
72 void Convert(G4String fFileName);
73 void CheckNColumns(std::vector<G4String> wl, size_t vsizeTh);
74 void ProcessFiles();
75 void CheckCTSlices();
76 G4double Hounsfield2density(Uint32 Hval);
77 size_t GetMaterialIndex(G4double Hval);
78 size_t GetMaterialIndexByDensity(G4double density);
79 void BuildCTMaterials();
80 void MergeCTFiles();
81 void CheckPETSlices();
82 void BuildPETActivities();
83 void MergePETFiles();
84 void DumpToTextFile();
85 void SetStructureNCheck(G4int nsc) { theStructureNCheck = nsc; }
86 G4int GetStructureNCheck() const { return theStructureNCheck; }
87 void SetStructureNMaxROI(G4int nsc) { theStructureNMaxROI = nsc; }
88 G4int GetStructureNMaxROI() const { return theStructureNMaxROI; }
89 G4int GetCompression() const { return fCompression; }
90 G4String GetFileOutName() const { return theFileOutName; }
91
92 void SetControlPointMetersets();
93 G4bool IsMaterialsDensity() const { return bMaterialsDensity; }
94
95 protected:
96 G4int fCompression;
97
98 private:
99 static DicomFileMgr* theInstance;
100
101 G4String theFileOutName;
102 // msd theFiles;
103 mdct theCTFiles;
104 std::vector<DicomFileStructure*> theStructFiles;
105 std::vector<DicomFilePlan*> thePlanFiles;
106 mdpet thePETFiles;
107 std::map<G4double, G4String> theMaterials;
108 std::map<G4double, G4String> theMaterialsDensity;
109 std::map<G4int, G4double> theCT2Density;
110
111 DicomFileCT* theCTFileAll;
112 DicomFilePET* thePETFileAll;
113 G4int theStructureNCheck;
114 G4int theStructureNMaxROI;
115
116 public:
117 static G4int verbose;
118 G4bool bMaterialsDensity;
119 };
120
121 #endif
122