| Geant4 Cross Reference |
1 # Example DICOM History
2
3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for writing good git commit messages!
6
7 -------------------------------------------------------------------------------
8
9 ## 2024-06-05 L. T. Anh (DICOM-V11-02-00)
10 - Correct symbols for Chlorine and Potassium elements in function
11 InitialisationOfMaterials().
12
13 ## 2023-12-03 A. Howard (DICOM-V11-01-02)
14 - Modified DicomDetectorConstruction: added correct replica depths for x,y,z
15 of G4PSDoseDeposit3D for nested parameterisation and corrected voxel ordering
16 according to the fixed formula within G4PSDoseDeposit3D; added environment
17 variable to switch to standard G4PSDoseDeposit in the case of regular
18 navigation (default).
19 - Updated README and .README to be more correct and include description of
20 G4PSDoseDeposit3D and its usage for nested parameterisation.
21
22 ## 2023-11-25 C. Mancini (DICOM-V11-01-01)
23 - Modified DicomNestedPhantomParameterisation: removed the "static" descriptor
24 from the "G4Material* mate" instantiation.
25
26 ## 2023-09-02 Gabriele Cosmo (DICOM-V11-01-00)
27 - Removed forward declaration for G4VTouchable.
28
29 ## 2022-10-04 John Allison (DICOM-V11-00-04)
30 - Introduce special mesh rendering of DICOM image.
31
32 ## 2022-10-24 I. Hrivnacova (DICOM-V11-00-03)
33 - Coding guidelines: start data member with 'f'; use G4int, G4double
34 (skipped dicomReader classes).
35
36 ## 2022-10-04 Ben Morgan (DICOM-V11-00-02)
37 - Replace sprintf with direct G4String use to remove deprecation warnings on
38 macOS-13.
39
40 ## 2022-10-04 Gabriele Cosmo (DICOM-V11-00-01)
41 - Fixed compilation warning on Intel-icx compiler for set but unused variable
42 in DicomHandler::ReadData().
43
44 ## 2021-12-10 Ben Morgan (DICOM-V11-00-00)
45 - Change to new Markdown History format.
46
47 ---
48
49 # History entries prior to 11.0
50
51 27.09.2021 Pedro Arce (DICOM-V10-07-01)
52 - Use updated interface from geomnav to use G4PhantomParameterisation::GetNoVoxels instead of GetNoVoxel
53
54 31.12.2020 - John Allison (DICOM-V10-07-00)
55 vis.mac: "Change /vis/ogl/set/eventsDrawInterval" to
56 "/vis/ogl/flushAt NthPrimitive".
57
58 10.11.2020 - Ben Morgan (DICOM-V10-06-01)
59 Migration to G4RunManagerFactory.
60
61 21.10.2020 - Ben Morgan (DICOM-V10-06-00)
62 Distinguish output names of archive lib from DLL and application to
63 fix Windows LNK1149 errors for static libs.
64 Modernize cmake version detection and policy setting to follow main
65 Geant4 usage.
66
67 19.11.2019 - Gabriele Cosmo (DICOM-V10-05-03)
68 Fixed more cases of implicit type conversions.
69 Some minor code cleanup.
70
71 15.11.2019 - Gabriele Cosmo (DICOM-V10-05-02)
72 Fixed cases of implicit type conversions from size_t to G4int.
73
74 12.11.2019 - Gunter Folger (DICOM-V10-05-01)
75 Correct DicomHandler singleton for use on Windows.
76 DICOM2 was crashing
77
78 08.06.2019 - Gabriele Cosmo (DICOM-V10-05-00)
79 Defaulted copy-ctr in DicomPhantomZSliceHeader, to fix deprecation
80 compilation warnings on gcc-9.1.
81
82 13.11.2018 - Jonathan Madsen (DICOM-V10-04-11)
83 Bugfix (2102) to DicomHandler reading fPixelSpacingY
84
85 13.11.2018 - Jonathan Madsen (DICOM-V10-04-10)
86 Bugfix (2101) to DicomHandler skipping 2 bytes in implicit VR
87
88 12.11.2018 - Jonathan Madsen (DICOM-V10-04-09)
89 Updated DICOMUtilities.cmake to handle Windows builds
90 Using modern CMake DICOM::target library alias
91
92 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-08)
93 DicomDetectorConstruction: removed useless static Instance()
94 method.
95
96 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-07)
97 DicomPartialDetectorConstruction: fixed shadowing of base class
98 data for 'fMateIDs'. Fixed type conversion unsigned_int -> int.
99
100 12.11.2018 - Gabriele Cosmo (DICOM-V10-04-06)
101 DicomNestedPhantomParameterisation: removed useless statement
102 causing compilation error on Linux.
103
104 10.11.2018 - Jonathan Madsen (DICOM-V10-04-05)
105 DICOMConfig.cmake.in handles DICOM_USE_HEAD being set
106 DownloadDICOMData.cmake does installation
107 CMakeLists.txt creates build-tree export
108 DicomDetectorConstruction is globally accessible
109 DicomHandler implements GetDicomData{Path,File}
110 which provides a fallback path to data libraries
111 directory for DICOM2 and handles DICOM_USE_HEAD situation
112 Phantom parameterization classes take an argument
113 specifying color file
114 fDcmrun is protected instead of private (for DICOM2)
115 DicomEventAction doesn't print every event
116 Removed DicomRun::RecordEvent incrementing numberOfEvent
117 (done by G4Run::RecordEvent)
118 Cleaned up output (when provided along with DICOM2 output
119 it was too excessive) now just a summary is provided
120 and per-voxel is output to file only
121 Moved Data.dat to Data.dat.old and CMake copies correct
122 Data.dat.{old,new} to Data.dat in binary directory based
123 on DICOM_USE_DCMTK setting
124 Updated README
125
126 09.11.2018 - Gabriele Cosmo (DICOM-V10-04-04)
127 Use canonical definition for DICOMRunAction; removed wrong
128 singleton specification (in any case not necessary).
129
130 22.06.2018 - Jonathan Madsen (DICOM-V10-04-03)
131 Added dicomReader/cmake/DICOMUtilities.cmake that defines
132 a DICOM_BUILD_LIBRARY macro which handles how to build
133 DICOM-library (and dicomReader library if USE_DICOM_DCMTK=ON)
134 based on the Geant4 installation (e.g. build shared, static, or
135 both) + updates to DICOMConfig.cmake.in and
136 dicomReaderConfig.cmake.in to handle which library type to
137 use link to
138
139 20.05.2018 - John Allison (DICOM-V10-04-02)
140 Remove G4UI_USE and G4VIS_USE.
141 Move instantiation of G4UIExecutive to start of main.
142
143 09.05.2018 - Ben Morgan (DICOM-V10-04-01)
144 Include G4Types before use of G4MULTITHREADED. For forward
145 compatibility with move to #defines over -D for G4 preprocessor
146 symbols.
147
148 20.03.2018 - Jonathan Madsen (DICOM-V10-04-00)
149 Enabled CMake package configuration
150 Added DICOM_USE_DCMTK and DICOM_USE_HEAD CMake
151 options back-compat with environment variables
152 Updated README and .README.txt
153
154 11.11.2017 - Marc Verderi (DICOM-V10-03-12)
155 Retag as DICOM-V10-03-11 too quickly rejected
156
157 09.11.2017 - Ivana Hrivnacova (DICOM-V10-03-11)
158 Updated DICOM data version to 1.1
159
160 09.11.2017 - S. Guatelli (DICOM-V10-03-10)
161 Updated README and .README.txt
162
163 09.11.2017 - S. Guatelli (DICOM-V10-03-09)
164 .g4dmc created in the user directory and not in the DICOM library,
165 together with the .g4dcmb files.
166
167 09.11.2017 - S. Guatelli (DICOM-V10-03-08)
168 DICOM_PATH changed
169 no writing .g4dcmb in the library DICOM
170
171 08.11.2017 - Ivana Hrivnacova (DICOM-V10-03-07)
172 Added downloading DICOM data in CMake build
173 (used only with DICOM_USE_HEAD option)
174
175 07.11.2017 - S. Guatelli (DICOM-V10-03-06).
176 Warning deleted, updated README and .README.txt
177
178 01.11.2017 - S. Guatelli (DICOM-V10-03-05).
179 DICOM_HEAD library can be used as input to the DICOM
180 DICOM_v1 does not need to be copied in the directory where the simulation is executed
181
182 01.11.2017 - S. Guatelli (DICOM-V10-03-04). DICOM_HEAD library can be used as input to the DICOM
183
184 28.09.2017 - S. Guatelli (DICOM-V10-03-03). DICOM_HEAD Directory deleted
185
186 16.09.2017 - S. Guatelli (DICOM-V10-03-02)
187 - New DICOM Digital Head included by S. Guatelli
188 - Updated README, .README.txt
189
190 19.11.2016 - Andrea Dotti (DICOM-V10-02-04)
191 - explicit set of SD to manager
192
193 11.11.2016 - Ivana Hrivnacova (DICOM-V10-02-03)
194 - Removed extra compiler flags in GNUmakefile, CMakeLists.txt
195 (not needed)
196 - Renamed G4_USE_DCMTK in DICOM_USE_DCMTK
197 - Updated README, .README.txt
198
199 11.11.2016 - Pedro Arce (DICOM-V10-02-02)
200 - Complying with Geant4 guidelines in data variables
201
202 04.11.2016 - Pedro Arce (DICOM-V10-02-01)
203 - New DICOM reader based on DCMTK
204
205 20.07.2016 - Ivana Hrivnacova (DICOM-V10-02-00)
206 - Fixed coding guidelines
207 (redundant empty lines, class data member names)
208
209 17.09.2015 - Pedro Arce (DICOM-V10-01-01)
210 - Fixed coding guidelines (long lines)
211
212 21.10.2014 - Pedro Arce (DICOM-V10-00-04)
213 - Fixed coding guidelines (long lines)
214
215 16.10.2014 - Ivana Hrivnacova (DICOM-V10-00-03)
216 - Fixed coding guidelines (long lines) in
217 DicomPartialDetectorConstruction.hh, DicomPhantomZSliceHeader.hh
218
219 29.07.2014 - Pedro Arce (DICOM-V10-00-02)
220 - Remove DicomPhysicsList
221
222 25.07.2014 - Pedro Arce (DICOM-V10-00-01)
223 - Using G4GenericPhysicsList
224 - no std::cout
225 - no exit()
226
227 03.12.2013 - Gabriele Cosmo (DICOM-V10-00-00)
228 - Attempt to fix Valgrind run-time error from printout in
229 DicomHandler::CheckFileFormat().
230
231 03.12.2013 - Ivana Hrivnacova (DICOM-V09-06-09)
232 - Updated README and .README to match (Pedro Arce)
233
234 18.11.2014 - Ivana Hrivnacova (DICOM-V09-06-08)
235 - Fixed DicomPhantomZSliceMerged.hh file description
236 (for Doxygen)
237
238 13.11.2014 - Jonathan Mdsen (DICOM-V09-06-07)
239 - Updated README and .README
240 - Fixed some comments
241
242 04.11.2013 - Dennis Wright (DICOM-V09-06-06)
243 - replaced LEP model for alphas by extending Binary cascade to
244 zero energy
245 - updated sample output files to reflect this
246
247 23.10.2013 - Gabriele Cosmo (DICOM-V09-06-05)
248 - Fixed compilation warnings.
249
250 15.10.2013 - Jonathan Madsen (DICOM-V09-06-04)
251 - Modified DICOM to enable multithreading
252 - Adapted scorers
253 - Added ActionInitialization class
254 - Modified RunAction to handle master and daughter threads
255
256 09.10.2013 - Ivana Hrivnacova (DICOM-V09-06-03)
257 Fixed file description (DicomPhantomZSliceMerged.hh)
258
259 28.08.2013 - Gabriele Cosmo (DICOM-V09-06-02)
260 Added G4Ellipsoid to solids enabled for parameterisation in
261 DicomNestedPhantomParameterisation.
262
263 29.07.2013 - Peter Gumplinger (DICOM-V09-06-01)
264 Fixed MAC/clang32 compilation warnings in DicomRunAction and
265 DiconIntersectVolume classes
266
267 18.07.2013 - Jonathan Madsen
268 Missing documentation update from 18.12.2012:
269 Improvements and bug-fixes ->
270 DicomHandler had some bugs when using DCM files
271 other than examples provided
272 Added DicomPhantomZSliceMerged class to handle
273 inconsistencies in DCM file meta-data
274 DicomPhantomZSliceHeader class is extended to hold density
275 and material ID data and the printing of data
276 to files instead of DicomHandler
277 Removed additions on 16.07.2013 pending further discussion
278 Reverted DICOM example to 18.12.2012 update with some very
279 minor tweaks
280 Kept share folder with additional anonymous DCM files
281 and additional data files (SixSlice.dat, AltData.dat). Rename
282 these files with Data.dat to use
283 Kept CMakeLists.txt to copy over extra data file and anonymous
284 DCM files
285
286 16.07.2013 - Jonathan Madsen
287 Many modifications to the DICOM example.
288 Added more anonymous DICOM files.
289 Added more script configurations.
290 Added DicomCommandLineOptions, DicomHelpers, DicomTypeConversion,
291 DicomOption as part of a command line processing package.
292 Modified CMakeLists.txt to configure extra files.
293 Added capability to use different data files for DICOM set,
294 CT2Density file, ColourMap file.
295 Added Statistical Analysis and Statistical Manager classes
296 Miscellaneous improvements.
297 DICOM.cc now has a large list of runtime configuration options
298 via command line.
299 Options set at command line are set to override environment
300 variables.
301
302 15.02.2013 - Ivana Hrivnacova (DICOM-V09-06-00)
303 Applied coding guidelines (virtual keyword, data members
304 names and initialization)
305
306 07.11.2012 - Gabriele Cosmo (DICOM-V09-05-10)
307 Fixed compilation warnings for shadowing of variables and unused
308 return flag from system calls.
309
310 18.10.2012 - Ivana Hrivnacova (DICOM-V09-05-09)
311 Updated CMakeLists.txt: added copying data files to the build
312 area as they are needed to run the tests.
313
314 13.10.2012 - Andrea Dotti (DICOM-V09-05-08)
315 Removing previous tag modification (not needed)
316
317 13.10.2012 - Andrea Dotti (DICOM-V09-05-07)
318 Adding explicit use of system of units
319
320 05.09.2012 - Ivana Hrivnacova (DICOM-V09-05-06)
321 Fixed compiler warning
322
323 04.09.2012 - Pedro Arce (DICOM-V09-05-05)
324 Remove old renamed files
325 Updated CMakeLists.txt (By I.Hrivnacova)
326 Adding visualization, copying macros, install target and
327 comment lines
328
329 17.07.2012 - Ivana Hrivnacova (DICOM-V09-05-04)
330 Improved README files
331
332 06.07.2012 - Pedro Arce (DICOM-V09-05-03)
333 Reviewed examples according to coding guidelines
334
335 13.06.2012 - Gabriele Cosmo (DICOM-V09-05-02)
336 Assign return value for fread() and fscanf() calls in
337 DicomHandler. Fixes compilation warnings on Ubuntu.
338
339 28.03.2012 - Pedro Arce (DICOM-V09-05-01)
340 Corrections in materials Z/A. Addressing problem report #1287.
341
342 13.11.2011 - Pedro Arce (DICOM-V09-04-03)
343 Migration to new G4Exception scheme.
344
345 03.10.2011 - G.Folger (DICOM-V09-04-02)
346 Fix gcc46 compilation warning in DicomHandler.cc
347 and DicomPhantomParameterisationColour.cc
348
349 05.06.2011 - Pedro Arce (DICOM-V09-04-01)
350 Corrected name for sensitive detector to be consistently
351 named as "phantomSD" in DicomRunAction. Addressing problem
352 report #1210.
353 Corrected axis slicing hint in nested-parameterisation.
354
355 23.12.2010 - Stephane Chauvie
356 Corrected 2 bugs in DicomHandler
357
358 30.11.2010 - John Allison
359 dicom.cc: Removed redundant headers:
360 "G4UIterminal.hh" and "G4UItcsh.hh".
361
362 30.11.2010 - Ivana Hrivnacova (DICOM-V09-03-09)
363 Moved inclusion of vis headers as last in main().
364
365 26.11.2010 - Pedro Arce (DICOM-V09-03-08)
366 Correction of warnings
367
368 24.11.2010 - Pedro Arce (DICOM-V09-03-07)
369 Introduced partial phantom example
370 Delete G4PSDoseDeposit_RegNav and use G4ScoreSplittingProcess instead
371
372 11.11.2010 - Gabriele Cosmo (DICOM-V09-03-06)
373 Corrected vis.mac macro and set OGL as default viewer.
374 Corrected some printouts in code...
375
376 09.11.2010 - Gabriele Cosmo (DICOM-V09-03-05)
377 Fixed compilation warning on virtual methods hiding
378 Fixed compilation warnings in DicomPhantomParameterisationColour
379 and DicomHandler.
380
381 02.11.2010 - John Allison (DICOM-V09-03-04)
382 Introduced G4UIExecutive.
383
384 06.06.2010 - Joseph Perl (DICOM-V09-03-03)
385 Remove unused variable in EventAction
386
387 03.06.2010 - Joseph Perl (DICOM-V09-03-02)
388 Updated vis usage
389
390 19.11.2009 - StÈphane Chauvie (DICOM-V09-03-00)
391 01.06.2010 - Stephane Chauvie - Andrea Armando
392 Added function to read nested items (defined and undefined)
393 Removed dependencies on CONQUEST
394 DICOM handler could now read whichever DICOM file
395 (PT,CT,DR,CR,US,MR... )
396
397 19.11.2009 - Stephanee Chauvie (DICOM-V09-02-03)
398 Changed DICOM Handler to read CT files coming from CONQUEST
399 DICOM server
400
401 05.02.2009 - Pedro Arce (DICOM-V09-02-01)
402 Added report on dose per voxel.
403 Added warning for erroneous inclusion of development code in
404 release 9.2 (to be removed when fix will be included in patch).
405
406 27.01.2009 - Gabriele Cosmo (DICOM-V09-02-00)
407 Use new class G4RegularNavigationHistory for counting of step
408 lengths in voxels of the regular structure.
409
410 27.11.2008 - Pedro Arce (DICOM-V09-01-02)
411 Included G4PSDoseDeposit_RegNav to distribute dose along voxels,
412 including msc and energy loss corrections, for the case of
413 skipping voxel with equal materials when using regular
414 navigation
415
416 21.07.2008 - Pedro Arce (DICOM-V09-01-01)
417 Bug fix in DicomNestedPhantomParameterisation in calculating the
418 'copyNo', so that material assignment was wrong
419 Set default cut to 1 mm (with previous 1.E-3 mm too much time is
420 spent on physics and no improvement is seen with different
421 navigation options).
422 Corrected direction and position of primary particles so that
423 they traverse the DICOM voxels.
424
425 22.01.2008 - Pedro Arce (DICOM-V09-01-00)
426 Do not use 'rindex' in DicomHandler class to avoid problems
427 on Windows.
428
429 06.12.2007 - Pedro Arce
430 Added voxel colouring by material. Added possibility to use nested parameterisation
431
432 05.12.2007 - Pedro Arce
433 Deep review on the input files and the way how the geometry is built.
434 Use of G4PhantomParameterisation and G4RegularNavigation.
435
436 06.12.2005 - Gabriele Cosmo
437 Trivial changes for support of CLHEP-2.0.X series.
438
439 29.11.2005 - Susanna Guatelli (DICOM-V07-01-00)
440 Documentation update
441
442 12.06.2005 - Stephane Chauvie (DICOM-V07-00-01)
443 Added improvement by Akinori Kimura.
444
445 03.05.2005 - John Allison
446 Replaced vis manager with G4VisExecutive.
447
448 10.12.2004 - Maria Grazia Pia (DICOM-V06-02-02)
449 Update README to announce further improvements and fixes
450 by Akinori Kimura.
451
452 3.12.2004 - Gabriele Cosmo (DICOM-V06-02-01)
453 Implemented migration to <cmath>.
454
455 13.5.2004 - Susanna Guatelli
456 updated compiler: gcc3.2.3
457
458 11.3.2003 - Susanna Guatelli
459 README changed
460
461 6.2003 - Susanna Guatelli
462 First public release of the example