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Geant4/examples/advanced/stim_pixe_tomography/scripts/Spectrum_proton.C

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  1 //***********************************************************************************************************
  2 // Spectrum_proton.C
  3 // Root command file
  4 // Type: root Spectrum_proton.C
  5 //
  6 // It visualizes the spectrum of protons and plots a histogram by reading
  7 // simulation result ProtonAtExit.dat
  8 //
  9 // More information is available in UserGuide
 10 // Created by Z.LI LP2i Bordeaux 2022
 11 //***********************************************************************************************************
 12 
 13 #include <math.h>
 14 #include <stdint.h>
 15 #include <stdio.h>
 16 #include <string.h>
 17 
 18 #include <vector>
 19 // using namespace std;
 20 
 21 // Define a structure to read and write each event in the required binary format
 22 struct RunInfo
 23 {
 24   // uint_16t
 25   uint8_t projectionIndex;  // 1 byte
 26   uint16_t sliceIndex;  //
 27   uint16_t pixelIndex;
 28   uint32_t nbParticle;  // 4 bytes int
 29 };
 30 
 31 struct ParticleInfo
 32 {
 33   float energy_keV;
 34   float mx;
 35   float my;
 36   float mz;
 37 };
 38 
 39 void Plot(vector<double>& energies, int bin, double eMin, double eMax)
 40 {
 41   auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
 42   gPad->SetLeftMargin(0.15);
 43 
 44   // unit is in keV
 45   auto hist = new TH1D("hist (keV)", "Spectrum of protons", bin, eMin, eMax);
 46 
 47   for (int i = 0; i < energies.size(); ++i) {
 48     hist->Fill(energies[i]);
 49   }
 50 
 51   hist->Draw();
 52   hist->GetXaxis()->SetTitle("Energy (keV)");
 53   hist->GetYaxis()->SetTitle("Counts");
 54   hist->GetXaxis()->CenterTitle();
 55   hist->GetYaxis()->CenterTitle();
 56 
 57   mycanvas->Print("spectrum_proton.png");
 58 }
 59 
 60 void Spectrum_proton()
 61 {
 62   FILE* input = fopen("../build/ProtonAtExit.dat", "rb");
 63   if (input == NULL) {
 64     printf("error for opening the input file\n");
 65     return;
 66   }
 67 
 68   //***********************************************************************
 69   //**************************Selection parameters (begin)*****************
 70   //***********************************************************************
 71 
 72   const int nbProjection = 10;
 73   const int nbSlice = 128;
 74   const int nbPixel = 20;
 75 
 76   int projection_index_begin = 0;  // starter of the projection selected
 77   int projection_index_end = 0;  // end of the projection selected
 78 
 79   int slice_index_begin = 64;  // starter of the slice selected
 80   int slice_index_end = 64;  // end of the slice selected
 81 
 82   //********************Parameters for spectrum***************************
 83   int bin = 100;
 84   double eMin = 0;  // keV
 85   double eMax = 0;  // keV
 86 
 87   //***********************************************************************
 88   //**************************Selection parameters (end)*******************
 89   //***********************************************************************
 90 
 91   RunInfo runInfo;
 92   vector<double> energies;
 93   int runID = -1;  // index of simulations, namely runID, starting from 0
 94   // while(!feof(input)) //if not the end, read
 95   while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
 96     runID++;
 97     int nbParticle = runInfo.nbParticle;
 98 
 99     // ***********the following codes are used
100     // if**************************************(begin)
101     // ***********the index of projection, slice and pixel is not correctly
102     // configured in the simulation
103     runInfo.projectionIndex = runID / (nbSlice * nbPixel);
104     int remain = runID % (nbSlice * nbPixel);
105     runInfo.sliceIndex = remain / nbPixel;
106     runInfo.pixelIndex = remain % nbPixel;
107     //******************************************************************************************(end)
108 
109     if (!nbParticle) continue;
110     std::vector<ParticleInfo> proton(nbParticle);
111     fread(&proton[0], sizeof(ParticleInfo), nbParticle, input);
112 
113     if (runInfo.projectionIndex >= projection_index_begin
114         && runInfo.projectionIndex <= projection_index_end)
115     {
116       if (runInfo.sliceIndex >= slice_index_begin && runInfo.sliceIndex <= slice_index_end) {
117         for (int i = 0; i < nbParticle; ++i) {
118           energies.push_back(proton[i].energy_keV);
119           if (proton[i].energy_keV > eMax) eMax = proton[i].energy_keV;
120         }
121       }
122     }
123     else
124       break;
125   }
126 
127   fclose(input);
128   Plot(energies, bin, eMin, eMax + 10);
129 }
130