Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/moleculardna/phase_space/phase_space_test.mac

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ] 

  1 #/process/dna/e-SolvationSubType Meesungnoen2002
  2 #/process/dna/e-SolvationSubType Ritchie1994
  3 #/process/dna/e-SolvationSubType Terrisol1990
  4 
  5 /run/numberOfThreads 1
  6 #/run/verbose 2
  7 #/control/verbose 1
  8 #/dnageom/verbose 1
  9 /tracking/verbose 2
 10 
 11 /chem/activate true
 12 /scheduler/verbose 0
 13 /material/verbose 2
 14 
 15 /world/worldSize 10200 nm
 16 /cell/radiusSize 3 3 3 um
 17 
 18 /dnageom/setSmartVoxels 1
 19 /dnageom/checkOverlaps false
 20 /scheduler/endTime 1 us
 21 
 22 /dnageom/radicalKillDistance 9 nm
 23 /dnageom/interactionDirectRange 7 angstrom
 24 
 25 /dnageom/placementSize 30 30 100 nm
 26 /dnageom/fractalScaling 1 1 1 nm
 27 /dnageom/definitionFile geometries/prisms200k_r3000.txt
 28 /dnageom/placementVolume prism geometries/straight-216-0.txt
 29 
 30 
 31 /dnageom/setVoxelPlacementAnglesAsMultiplesOfPi false
 32 /dnageom/useCustomMoleculeSizes false
 33 
 34 # used default moleculeSize
 35 #/dnageom/moleculeSize
 36 
 37 /dnageom/drawCellVolumes false
 38 /dnageom/activateHistoneScavenging true
 39 
 40 
 41 /chromosome/add cylinder sphere 3000 0 0 0 nm
 42 
 43 # Damage Model
 44 /dnadamage/directDamageLower 17.5 eV
 45 /dnadamage/directDamageUpper 17.5 eV
 46 
 47 /dnadamage/indirectOHBaseChance 1.0
 48 /dnadamage/indirectOHStrandChance 0.65
 49 /dnadamage/inductionOHChance 0.0
 50 
 51 /dnadamage/indirectHBaseChance 1.0
 52 /dnadamage/indirectHStrandChance 0.65
 53 /dnadamage/inductionHChance 0.00
 54 
 55 /dnadamage/indirectEaqBaseChance 1.0
 56 /dnadamage/indirectEaqStrandChance 0.65
 57 /dnadamage/inductionEaqChance 0.00
 58 
 59 /analysisDNA/saveStrands false
 60 /analysisDNA/fragmentGap 0  # do not join
 61 #/analysisDNA/diagnosticChain
 62 
 63 /run/initialize
 64 
 65 # Uncomment the next line to visualize cylinder DNA geometry
 66 #/control/execute vis.mac
 67 
 68 # unit tests
 69 #/dnatests/uniqueid
 70 #/dnatests/basepairs
 71 #/dnatests/chromosome
 72 #/analysisDNA/testClassifier
 73 # end unit tests
 74 
 75 /run/printProgress 100
 76 
 77 /primarygenerator/inputFile phase_space.csv
 78 /run/beamOn 2