Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/moleculardna/include/BoxChromosome.hh

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 //
 27 /// file: BoxChromosome.hh
 28 /// brief: declaration file for a Box chromosome model.
 29 
 30 #ifndef MOLECULAR_BOX_CHROMOSOME_HH
 31 #define MOLECULAR_BOX_CHROMOSOME_HH
 32 
 33 #include "VirtualChromosome.hh"
 34 
 35 #include "G4RotationMatrix.hh"
 36 #include "G4ThreeVector.hh"
 37 #include "globals.hh"
 38 
 39 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 40 
 41 class BoxChromosome : public VirtualChromosome
 42 {
 43   public:
 44     BoxChromosome(const G4String&, G4ThreeVector, const G4double&, const G4double&,
 45                   const G4double&);
 46 
 47     BoxChromosome(const G4String&, G4ThreeVector, const G4double&, const G4double&, const G4double&,
 48                   G4RotationMatrix);
 49 
 50     ~BoxChromosome() override;
 51 
 52     G4bool PointInChromosome(G4ThreeVector const& position) override;
 53 
 54     G4ThreeVector RandomPointInChromosome() override;
 55 
 56     G4String GetShape() override { return fShape; };
 57 
 58     static const G4String fShape;
 59 
 60     void Print() override
 61     {
 62       G4cout << "type: " << fShape << G4endl;
 63       G4cout << "x: " << fXdim << G4endl;
 64       G4cout << "y: " << fYdim << G4endl;
 65       G4cout << "z: " << fZdim << G4endl;
 66       G4cout << "center: " << fCenter << G4endl;
 67       G4cout << "rotation: " << fRotation.getPhi() << " " << fRotation.getTheta() << " "
 68              << fRotation.getPhi() << G4endl;
 69     }
 70 
 71     inline void SetRotation(const G4RotationMatrix& rot)
 72     {
 73       fRotation = rot;
 74       fInverseRotation = fRotation.inverse();
 75     };
 76 
 77     inline G4RotationMatrix GetRotation() const { return fRotation; };
 78 
 79     inline G4ThreeVector GetPosition() const { return fCenter; };
 80 
 81     inline G4double GetXDim() const { return fXdim; };
 82     inline G4double GetYDim() const { return fYdim; };
 83     inline G4double GetZDim() const { return fZdim; };
 84 
 85   private:
 86     G4ThreeVector fCenter;
 87     G4double fXdim;
 88     G4double fYdim;
 89     G4double fZdim;
 90     G4RotationMatrix fRotation, fInverseRotation;
 91 };
 92 
 93 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 94 
 95 #endif  // MOLECULAR_BOX_CHROMOSOME_HH
 96