Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/moleculardna/History

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ] 

  1 # Example molecularDNA History
  2 
  3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
  4 which **must** added in reverse chronological order (newest at the top).
  5 It must **not** be used as a substitute for writing good git commit messages!
  6 
  7 -------------------------------------------------------------------------------
  8 
  9 ## 2024-11-05 H. Tran (molecularDNA-V11-02-13)
 10 - added missing plasmid analysis root macro file
 11 
 12 ## 2024-11-04 S. Incerti (molecularDNA-V11-02-12)
 13 - updated README and .README
 14 
 15 ## 2024-10-31 K. Chatzipapas (molecularDNA-V11-02-11)
 16 - Adding chromosomal geometry related files
 17   human_cell_chromosome.mac
 18   human_cell_chromosome.C
 19   human_cell_chromosome.py
 20   human_cell_chromosome.txt
 21 
 22 ## 2024-10-22 Hoang Tran (molecularDNA-V11-02-10)
 23 - Corrected README files for plasmid geometry.
 24 
 25 ## 2024-10-17 Hoang Tran (molecularDNA-V11-02-09)
 26 - Moved from extended example to advanced example.
 27 
 28 ## 2024-10-07 Hoang Tran (molecularDNA-V11-02-08)
 29 - Added plasmid geometry
 30 
 31 ## 2024-10-03 Hoang Tran (molecularDNA-V11-02-07)
 32 - Modified the molecule names of OH, HO2, O in MoleculeDefinition.
 33   Each molecule configuration has a molecule definition.
 34 
 35 ## 2024-10-02 S. Incerti (molecularDNA-V11-02-06)
 36 - added more comments in ChromosomeMessenger for rod
 37 
 38 ## 2024-09-16 S. Incerti (molecularDNA-V11-02-05)
 39 - fixed coding conventions violations
 40 
 41 ## 2024-09-06 S. Incerti (molecularDNA-V11-02-04)
 42 - updated README
 43 
 44 ## 2024-09-05 S. Incerti (molecularDNA-V11-02-03)
 45 - commented Geant4 macros
 46 - commented README
 47 
 48 ## 2024-08-20 H. Tran (molecularDNA-V11-02-02)
 49 - modification of TimeStepModel interface
 50 - used the physico-chemistry builder
 51 - edited README files
 52 
 53 ## 2024-07-29 S. Incerti (molecularDNA-V11-02-01)
 54 - Fixed bug in DNAGeometryMessenger
 55 
 56 ## 2024-04-18 H. Tran (molecularDNA-V11-02-00)
 57 - Updated /dnageom/interactionDirectRange to 2.0 angstrom
 58 
 59 ## 2023-11-09 H. Tran (molecularDNA-V11-01-08)
 60 - Added info in .README.txt and README files
 61 
 62 ## 2023-11-07 I. Hrivnacova (molecularDNA-V11-01-07)
 63 - Fixed formatting in .README.txt
 64 
 65 ## 2023-09-13 I. Hrivnacova (molecularDNA-V11-01-06)
 66 - Removed unused public data member
 67   PrimaryGeneratorSourceGRASCSV::nLineCounter
 68 
 69 ## 2023-08-28 Hoang Tran (molecularDNA-V11-01-05)
 70 - add the geometry files for HTB177 and MCF-7 cell lines.
 71 
 72 ## 2023-05-31 Hoang Tran (molecularDNA-V11-01-04)
 73 - restore the correction of the material bug
 74 
 75 ## 2023-04-20 Ronny Stanzani (molecularDNA-V11-01-03)
 76 - Add the ability to read particles from a space phase file (csv)
 77 - Overall code revision with clang-tidy
 78 
 79 ## 2023-02-07 Hoang Tran (molecularDNA-V11-01-02)
 80 - correct the material bug in moleculardna example
 81 - add /scheduler/endTime 1 us in ecoli.mac and cylinders.mac
 82 
 83 ## 2023-01-13 Ben Morgan (molecularDNA-V11-01-01)
 84 - Migrate data download to CERN EOS area for examples
 85 
 86 ## 2022-12-12 Hoang Tran (molecularDNA-V11-01-00)
 87 - update ecoli.mac file (Nathanael's parameter)
 88 
 89 ## 2022-11-15 Hoang Tran (molecularDNA-V11-00-11)
 90 - correct ecoli.mac file
 91 
 92 ## 2022-10-24 Konstantinos Chatzipapas (molecularDNA-V11-00-10)
 93 - Add repair-survival-models
 94   - molecularDNArepair.py
 95   - molecularDNAsurvival.py (beta)
 96 - Update ecoli files (fix bug)
 97 - Update vis.mac and cylinders.mac
 98 
 99 ## 2022-09-20 Hoang Tran (molecularDNA-V11-00-09)
100 - Fixed the examples naming conventions violations
101 - reduce event number of ecoli.mac
102 
103 ## 2022-08-30 Vladimir Ivanchenko (molecularDNA-V11-00-08)
104 - ChemistryList - added forgotten header
105 
106 ## 2022-08-27 Hoang Tran (molecularDNA-V11-00-07)
107 - Fix smart pointer warning in gcc 12.1.
108 - Fix typo in the human_cell.C.
109 
110 ## 2022-07-12 Konstantinos Chatzipapas (molecularDNA-V11-00-06)
111 - Fix ecoli.C minor bug on filename.
112 
113 ## 2022-06-10 Sergio Losilla (molecularDNA-V11-00-05)
114 - Added missing headers.
115 
116 ## 2022-05-03 Konstantinos Chatzipapas (molecularDNA-V11-00-04)
117 - add ecoli.C macro file
118 - add createSDD.py
119 
120 ## 2022-04-14 Hoang Tran (molecularDNA-V11-00-03)
121 - correct a minor mistake in AnalysisManager
122 - Add Complexity Frequency in cylinder.C
123 - add human_cell.C macro file
124 
125 ## 2022-02-27 Vladimir Ivanchenko (molecularDNA-V11-00-02)
126 - PhysicsList - added DecayPhysics and RadioactiveDecayPhysics
127 - ParallelWorldPhysics - minor clean-up
128 - molecular.cc - updated according to the recent recommendations:
129     removed ifdef, removed RanecuEngine, use visualisation in
130     the interactive session only, use G4RunManagerFactory
131 
132 ## 2022-02-17 Hoang Tran (molecularDNA-V11-00-01)
133 - modify Chemistry list
134 - timeout for the geometry data download
135 - the exception message in DNAGeometryMessenger::SetNewValue
136 
137 ## 2022-01-07 Hoang Tran (molecularDNA-V11-00-00)
138 - initial tag