Geant4 Cross Reference

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Geant4/examples/advanced/dna/dsbandrepair/src/UserMoleculeGun.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
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 25 //
 26 //
 27 /// \file UserMoleculeGun.cc
 28 /// \brief Implementation of the UserMoleculeGun class
 29 
 30 #include "UserMoleculeGun.hh"
 31 #include "UserMolecule.hh"
 32 
 33 #include "G4MoleculeTable.hh"
 34 #include "G4SystemOfUnits.hh"
 35 #include "G4VITTrackHolder.hh"
 36 #include "G4H2O.hh"
 37 #include "G4Track.hh"
 38 
 39 UserMoleculeShoot::UserMoleculeShoot() :
 40 G4enable_shared_from_this<UserMoleculeShoot>()
 41 {
 42     fMoleculeName = "";
 43     fTime = 0;
 44     fNumber = 1;
 45     fBoxSize = 0;
 46     fCopyNumber = -1;
 47     fStrand = -1;
 48 }
 49 
 50 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 51 
 52 UserMoleculeShoot::~UserMoleculeShoot()
 53 {
 54     if(fBoxSize) delete fBoxSize;
 55 }
 56 
 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 58 
 59 template<>
 60 void TUserMoleculeShoot<G4Track>::ShootAtRandomPosition(UserMoleculeGun* gun)
 61 {
 62     G4ThreeVector positionInLocalCoordinate;
 63 
 64     for(int i = 0; i < fNumber; ++i)
 65     {
 66         RandomPosInBox(*fBoxSize, positionInLocalCoordinate);
 67         if(fStrand<=0)
 68         gun->BuildAndPushTrack(fMoleculeName,
 69         fPosition + positionInLocalCoordinate,
 70         fTime);
 71     else
 72         gun->BuildAndPushTrack(fMoleculeName,
 73         fPosition + positionInLocalCoordinate,
 74         fTime,fCopyNumber,fStrand);
 75     }
 76 }
 77 
 78 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 79 
 80 template<>
 81 void TUserMoleculeShoot<G4Track>::ShootAtFixedPosition(UserMoleculeGun* gun)
 82 {
 83     for(int i = 0; i < fNumber; ++i)
 84     {
 85         if(fStrand<=0)
 86         gun->BuildAndPushTrack(fMoleculeName, fPosition, fTime);
 87         else
 88         gun->BuildAndPushTrack(fMoleculeName,fPosition,fTime,fCopyNumber,fStrand);
 89     }
 90 }
 91 
 92 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 93 
 94 template<>
 95 void TUserMoleculeShoot<G4Track>::MyShoot(UserMoleculeGun* gun)
 96 {
 97     if(fBoxSize) ShootAtRandomPosition(gun);
 98     else ShootAtFixedPosition(gun);
 99 }
100 
101 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
102 
103 void UserMoleculeGun::DefineTracks()
104 {
105     for (size_t i = 0; i < fShoots.size(); i++)
106     {
107         fShoots[i]->MyShoot(this);
108     }
109 }
110 
111 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
112 
113 void UserMoleculeGun::AddMolecule(const G4String& name,
114     const G4ThreeVector& position,
115     G4double time,
116     G4int copyNumber,
117     G4int strand)
118 {
119     G4shared_ptr<UserMoleculeShoot> shoot(new TUserMoleculeShoot<G4Track>());
120     shoot->fMoleculeName = name;
121     shoot->fPosition = position;
122     shoot->fTime = time;
123     shoot->fCopyNumber = copyNumber;
124     shoot->fStrand = strand;
125     fShoots.push_back(shoot);
126 }
127 
128 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
129 
130 void UserMoleculeGun::AddWaterMolecule(const G4ThreeVector& position,
131     G4int trackId,
132     ElectronicModification elecModif,
133     G4int electronicLevel)
134 {
135     UserMolecule * H2O = new UserMolecule (G4H2O::Definition() );
136     switch (elecModif)
137     {
138         case eDissociativeAttachment:
139         H2O -> AddElectron(5,1);
140         break;
141         case eExcitedMolecule :
142         H2O -> ExciteMolecule(electronicLevel);
143         break;
144         case eIonizedMolecule :
145         H2O -> IonizeMolecule(electronicLevel);
146         break;
147     }
148     
149     G4Track * H2OTrack = H2O->BuildTrack(1*picosecond, position);
150     H2OTrack->SetParentID(trackId);
151     H2OTrack->SetTrackStatus(fStopButAlive);
152     H2OTrack->SetKineticEnergy(0.);
153     G4VITTrackHolder::Instance()->Push(H2OTrack);
154 }
155 
156 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
157 
158 void UserMoleculeGun::BuildAndPushTrack(const G4String& name,
159     const G4ThreeVector& position,
160     G4double time)
161 {
162     G4MolecularConfiguration* conf =
163     G4MoleculeTable::Instance()->GetConfiguration(name);
164     assert(conf != 0);
165     UserMolecule* molecule = new UserMolecule(conf);
166     PushTrack(molecule->BuildTrack(time, position));
167 }
168 
169 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
170 
171 void UserMoleculeGun::BuildAndPushTrack(const G4String& name,
172     const G4ThreeVector& position,
173     G4double time,
174     G4int copyNumber,
175     G4int strand)
176 {
177     G4MoleculeDefinition* def = G4MoleculeTable::Instance()->GetMoleculeDefinition(name);
178     assert(def != 0);
179     UserMolecule* molecule = new UserMolecule(def);
180     molecule->SetCopyNumber(copyNumber);
181     molecule->SetStrand(strand);
182 
183     PushTrack(molecule->BuildTrack(time, position));
184 }
185 
186 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
187