Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/dsbandrepair/src/PhysChemIO.cc

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  1 //
  2 // ********************************************************************
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 25 //
 26 //
 27 /// \file PhysChemIO.cc
 28 /// \brief Implementation of the PhysChemIO class
 29 
 30 #include "PhysChemIO.hh"
 31 #include "SteppingAction.hh"
 32 #include "Analysis.hh"
 33 #include "G4Track.hh"
 34 #include "G4NavigationHistory.hh"
 35 #include "G4RunManager.hh"
 36 
 37 #ifdef USE_MPI
 38 #include "G4MPImanager.hh"
 39 #endif
 40 
 41 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 42 
 43 PhysChemIO::PhysChemIO(SteppingAction* stepAction) : G4VPhysChemIO(),
 44 fSteppingAction(stepAction)
 45 {;}
 46 
 47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 48 
 49 void PhysChemIO::CreateWaterMolecule(G4int electronicModif, G4int electronicLevel,
 50                                     G4double /*energy*/,
 51                                     const G4Track* theIncomingTrack)
 52 {
 53     //L.T. Anh:  to correct electronicLevel in G4DNAChemistryManager, 
 54     //see in G4DNAChemistryManager::CreateWaterMolecule
 55     electronicLevel = 4 - electronicLevel; 
 56     //Rel pos
 57     G4ThreeVector relPos;
 58     auto touchable = theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable();
 59     relPos = touchable->GetHistory()->GetTopTransform().TransformPoint(theIncomingTrack->GetPosition());
 60     
 61     // Get the flag of the current volume
 62     G4int volumeFlag =fSteppingAction->SetupVolumeFlag(
 63         theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetVolume()->GetName());
 64     
 65     if(    volumeFlag == 161  // voxelStraight
 66         || volumeFlag == 162 // voxelRight
 67         || volumeFlag == 163 // voxelLeft
 68         || volumeFlag == 164 // voxelUp
 69         || volumeFlag == 165 // voxelDown
 70         || volumeFlag == 261  // voxelStraight2
 71         || volumeFlag == 262 // voxelRight2
 72         || volumeFlag == 263 // voxelLeft2
 73         || volumeFlag == 264 // voxelUp2
 74         || volumeFlag == 265) // voxelDown2
 75     {
 76         // Get the volume copy number
 77         G4int volumeCpNum = touchable->GetCopyNumber();
 78         //theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetVolume()->GetUserID();
 79 
 80         // Default flag values
 81         G4String motherVolumeName = "";
 82         G4int motherVolumeFlag = -1;
 83         G4int motherVolumeCpNum = -1;
 84 
 85         // Mother volume informations
 86 
 87         // Be sure there is a mother volume to ask for
 88         if(theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetHistoryDepth() >0)
 89         {
 90             G4VPhysicalVolume* motherVol = theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetVolume(1);
 91 
 92             // General infos
 93             motherVolumeName = motherVol->GetName();
 94             motherVolumeFlag = fSteppingAction->SetupVolumeFlag(motherVolumeName);
 95             motherVolumeCpNum = motherVol->GetCopyNo();
 96         }
 97         G4int eventId = G4RunManager::GetRunManager()->GetCurrentEvent()->GetEventID();
 98 #ifdef USE_MPI
 99         auto g4MPI = G4MPImanager::GetManager();
100         if (g4MPI->IsSlave()) { // update eventID only for slave, cause rank_master=0
101             G4int rank = g4MPI->GetRank();
102             eventId += g4MPI->GetEventsInMaster() + (rank-1)*g4MPI->GetEventsInSlave();
103         }
104 #endif
105         
106         InfoForChemGeo aInfo;
107         aInfo.fType = 1; // water=1
108         aInfo.fState = electronicModif ;
109         aInfo.fElectronicLevel = electronicLevel ;
110         aInfo.fX = theIncomingTrack->GetPosition().x()/nm;
111         aInfo.fY = theIncomingTrack->GetPosition().y()/nm;
112         aInfo.fZ = theIncomingTrack->GetPosition().z()/nm;
113         aInfo.fParentTrackID = theIncomingTrack->GetTrackID() ;
114         aInfo.fEventNumber = eventId;
115         aInfo.fVolume = volumeFlag ;
116         aInfo.fVolumeCopyNumber = volumeCpNum;
117         aInfo.fMotherVolume = motherVolumeFlag ;
118         aInfo.fMotherVolumeCopyNumber = motherVolumeCpNum ;
119         aInfo.fRelX = relPos.x()/nm;
120         aInfo.fRelY = relPos.y()/nm;
121         aInfo.fRelZ = relPos.z()/nm;
122         Analysis::GetAnalysis()->AddInfoForChemGeo(aInfo);
123     }
124 }
125 
126 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
127 
128 void PhysChemIO::CreateSolvatedElectron(const G4Track* theIncomingTrack, G4ThreeVector* finalPosition)
129 {
130     G4ThreeVector pos;
131     if(finalPosition) pos = *finalPosition;
132     else pos = theIncomingTrack->GetPosition();
133 
134     // Rel pos
135     G4ThreeVector relPos;
136     const G4VTouchable* touchable = theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable();
137     relPos = touchable->GetHistory()->GetTopTransform().TransformPoint(pos);
138 
139     // Current volume infos
140     G4int volumeFlag = fSteppingAction->SetupVolumeFlag(
141         theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetVolume()->GetName());
142     if(    volumeFlag == 161  // voxelStraight
143         || volumeFlag == 162 // voxelRight
144         || volumeFlag == 163 // voxelLeft
145         || volumeFlag == 164 // voxelUp
146         || volumeFlag == 165 // voxelDown
147         || volumeFlag == 261  // voxelStraight2
148         || volumeFlag == 262 // voxelRight2
149         || volumeFlag == 263 // voxelLeft2
150         || volumeFlag == 264 // voxelUp2
151         || volumeFlag == 265) // voxelDown2
152     {
153         G4int volumeCpNum = touchable->GetCopyNumber();
154 
155         G4String motherVolumeName = "";
156         G4int motherVolumeFlag = -1;
157         G4int motherVolumeCpNum = -1;
158 
159         // Mother volume informations
160         // Be sure there is a mother volume to ask for
161         if(theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetHistoryDepth() >0)
162         {
163             G4VPhysicalVolume* motherVol = theIncomingTrack->GetStep()->GetPreStepPoint()->GetTouchable()->GetVolume(1);
164             // General infos
165             motherVolumeName = motherVol->GetName();
166             motherVolumeFlag = fSteppingAction->SetupVolumeFlag(motherVolumeName);
167             motherVolumeCpNum = motherVol->GetCopyNo();
168         }
169         G4int eventId = G4RunManager::GetRunManager()->GetCurrentEvent()->GetEventID();
170 #ifdef USE_MPI
171         auto g4MPI = G4MPImanager::GetManager();
172         if (g4MPI->IsSlave()) { // update eventID only for slave, cause rank_master=0
173             G4int rank = g4MPI->GetRank();
174             eventId += g4MPI->GetEventsInMaster() + (rank-1)*g4MPI->GetEventsInSlave();
175         }
176 #endif
177         
178         InfoForChemGeo aInfo;
179         aInfo.fType = 2; // / solvated electron=2
180         aInfo.fState = -1; // no state for solvated electron
181         aInfo.fElectronicLevel = -1; // no electronic level for solvated electron
182         aInfo.fX = pos.x()/nm;
183         aInfo.fY = pos.y()/nm;
184         aInfo.fZ = pos.z()/nm;
185         aInfo.fParentTrackID = theIncomingTrack->GetTrackID() ;
186         aInfo.fEventNumber = eventId;
187         aInfo.fVolume = volumeFlag ;
188         aInfo.fVolumeCopyNumber = volumeCpNum ;
189         aInfo.fMotherVolume = motherVolumeFlag ;
190         aInfo.fMotherVolumeCopyNumber =  motherVolumeCpNum ;
191         aInfo.fRelX = relPos.x()/nm;
192         aInfo.fRelY = relPos.y()/nm;
193         aInfo.fRelZ = relPos.z()/nm;
194         Analysis::GetAnalysis()->AddInfoForChemGeo(aInfo);
195     }
196 }
197 
198 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......