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Geant4/examples/advanced/dna/dsbandrepair/analysis/dnadamage/src/ClassifiedDamage.cc

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  1 //
  2 // ********************************************************************
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 26 //
 27 /// \file ClassifiedDamage.cc
 28 /// \brief Implementation of the ClassifiedDamage class
 29 
 30 #include "ClassifiedDamage.hh"
 31 
 32 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 33 
 34 ClassifiedDamage::ClassifiedDamage()
 35 {
 36   fType = fNA;
 37   fDamage.clear();
 38   fBp_begin = 0;
 39   fBp_end = 0;
 40   fComplexity = -1;
 41   fIncludeBase = false;
 42 }
 43 
 44 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 45 
 46 void ClassifiedDamage::AddDamage(Damage pDmg)
 47 {
 48   fDamage.push_back(pDmg);
 49 }
 50 
 51 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 52 
 53 void ClassifiedDamage::ComputeBp()
 54 {
 55   fBp_begin = fDamage[0].GetCopyNb();
 56   fBp_end = fDamage[fDamage.size()-1].GetCopyNb();
 57 
 58   fBp_barycenter=0;
 59   for(auto it=fDamage.begin();it!=fDamage.end();it++)
 60   {
 61     fBp_barycenter+=it->GetCopyNb();
 62   }
 63   fBp_barycenter = fBp_barycenter/fDamage.size();
 64 }
 65 
 66 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 67 
 68 void ClassifiedDamage::ComputePosition()
 69 {
 70   // TODO
 71 }
 72 
 73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 74 
 75 void ClassifiedDamage::ComputeComplexity()
 76 {
 77   if(fDamage.size()==0)
 78   {
 79     fComplexity = -1;
 80   }
 81   else
 82   {
 83     fComplexity = -1;
 84     for(auto it=fDamage.begin();it!=fDamage.end();it++)
 85     {
 86       if((it->GetDamageType()==Damage::DamageType::fBackbone))
 87       {
 88         fComplexity++;
 89       }
 90       else
 91       {
 92         if(fIncludeBase)
 93         {
 94           fComplexity++;
 95         }
 96       }
 97     }
 98   }
 99 }
100 
101 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
102 
103 void ClassifiedDamage::ComputeType()
104 {
105   bool firstStrandTouched = false;
106   bool secondStrandTouched = false;
107 
108   if(fDamage.size()==0)
109   {
110     fType = fNA;
111   }
112   else
113   {
114     for(auto it=fDamage.begin();it!=fDamage.end();it++)
115     {
116       if((it->GetDamageType()==Damage::DamageType::fBackbone))
117       {
118         int strand = it->GetStrand();
119         if(strand == 1)
120         {
121           firstStrandTouched = true;
122         }
123         if(strand == 2)
124         {
125           secondStrandTouched = true;
126         }
127       }
128 
129       if (it->GetCause() == Damage::DamageCause::fDirect) {
130         fIsThereDirectContribution = true;
131       }
132 
133       if (it->GetCause() == Damage::DamageCause::fIndirect) {
134         fIsThereIndirectContribution = true;
135       }
136     }
137 
138     if(firstStrandTouched && secondStrandTouched)
139     {
140       fType = fDSB;
141     }
142     else
143     {
144       fType = fSSB;
145     }
146   }
147 }
148 
149 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
150 
151 void ClassifiedDamage::Reset()
152 {
153   fType = fNA;
154   fDamage.clear();
155   fBp_begin = 0;
156   fBp_end = 0;
157   fComplexity = -1;
158 }
159