Geant4 Cross Reference

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Geant4/examples/advanced/dna/dsbandrepair/analysis/dnadamage/include/DamageClassifier.hh

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 27 //
 28 /// \file DamageClassifier.hh
 29 /// \brief Definition of the DamageClassifier class
 30 
 31 #ifndef DAMAGECLASSIFIER_HH
 32 #define DAMAGECLASSIFIER_HH
 33 
 34 #include <map>
 35 #include <vector>
 36 #include "Damage.hh"
 37 #include "ClassifiedDamage.hh"
 38 
 39 /// \brief defines the tool to make cluster of damage
 40 class DamageClassifier
 41 {
 42 public:
 43   /// \brief constructor
 44   DamageClassifier() = default;
 45   /// \brief destructor
 46   ~DamageClassifier() = default;
 47 
 48   // Make a cluster of damage
 49   std::vector<ClassifiedDamage> MakeCluster(std::vector<Damage>&,unsigned int pDSBLength,bool pBase);
 50 
 51   // Return the number of SSB inside a list of classified damage
 52   unsigned int GetNumSSB(const std::vector<ClassifiedDamage>&) const;
 53   // Return the number of DSB (simple + complex) inside a list of classified damage
 54   unsigned int GetNumDSB(const std::vector<ClassifiedDamage>&) const;
 55   // Return the number of complex DSB inside a list of classified damage
 56   unsigned int GetNumComplexDSB(const std::vector<ClassifiedDamage>&) const;
 57 
 58   // Le Tuan Anh: Return the number of DSB (simple + complex) with the contribution 
 59   //of at least 1 direct damage inside a list of classified damage
 60   unsigned int GetNumDSBwithDirectDamage(const std::vector<ClassifiedDamage>&) const; 
 61   // Le Tuan Anh: Return the number of DSB (simple + complex) with the contribution 
 62   //of at least 1 indirect damage inside a list of classified damage
 63   unsigned int GetNumDSBwithIndirectDamage(const std::vector<ClassifiedDamage>&) const; 
 64   // Le Tuan Anh: Return the number of DSB (simple + complex) with the contribution of 
 65   //both direct and indirect damage inside a list of classified damage
 66   unsigned int GetNumDSBwithBothDirectIndirectDamage(const std::vector<ClassifiedDamage>&) const; 
 67 
 68 // Utils to sort a vector of damage in maps to easily have access by event or by chromosome ID
 69 // First key is event, second is chromosome ID
 70 std::map<unsigned int,std::map<unsigned int,std::vector<Damage>>> 
 71 SortDamageByEvent(const std::vector<Damage>&);
 72 // First key is chromosome ID, second is event
 73 std::map<unsigned int,std::map<unsigned int,std::vector<Damage>>> 
 74 SortDamageByChromo(const std::vector<Damage>&);
 75 
 76 };
 77 
 78 #endif //
 79