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25 // 25 //
26 /* 26 /*
27 * G4VUserChemistryList.cc 27 * G4VUserChemistryList.cc
28 * 28 *
29 * Created on: 23 oct. 2013 29 * Created on: 23 oct. 2013
30 * Author: kara 30 * Author: kara
31 */ 31 */
32 32
33 #include "G4VUserChemistryList.hh" 33 #include "G4VUserChemistryList.hh"
34 34
35 #include <G4VScheduler.hh> 35 #include <G4VScheduler.hh>
36 #include "G4MoleculeTable.hh" 36 #include "G4MoleculeTable.hh"
37 #include "G4MoleculeDefinition.hh" 37 #include "G4MoleculeDefinition.hh"
38 #include "G4ProcessManager.hh" 38 #include "G4ProcessManager.hh"
39 #include "G4DNAChemistryManager.hh" 39 #include "G4DNAChemistryManager.hh"
40 40
41 G4VUserChemistryList::G4VUserChemistryList(G4b << 41 G4VUserChemistryList::G4VUserChemistryList(bool flag) :
42 fIsPhysicsConstructor(flag) 42 fIsPhysicsConstructor(flag)
43 { 43 {
44 verboseLevel = 1; 44 verboseLevel = 1;
45 } 45 }
46 46
47 G4VUserChemistryList::~G4VUserChemistryList() 47 G4VUserChemistryList::~G4VUserChemistryList()
48 { 48 {
49 G4DNAChemistryManager* chemMan = G4DNAChemis 49 G4DNAChemistryManager* chemMan = G4DNAChemistryManager::GetInstanceIfExists();
50 if (chemMan != nullptr) << 50 if (chemMan)
51 { 51 {
52 chemMan->Deregister(*this); 52 chemMan->Deregister(*this);
53 } 53 }
54 } 54 }
55 55
56 void G4VUserChemistryList::RegisterTimeStepMod 56 void G4VUserChemistryList::RegisterTimeStepModel(G4VITStepModel* timeStepModel,
57 << 57 double startingTime)
58 { 58 {
59 G4VScheduler::Instance()->RegisterModel(time 59 G4VScheduler::Instance()->RegisterModel(timeStepModel, startingTime);
60 } 60 }
61 61
62 void G4VUserChemistryList::BuildPhysicsTable() 62 void G4VUserChemistryList::BuildPhysicsTable()
63 { 63 {
64 G4MoleculeTable* theMoleculeTable = G4Molecu 64 G4MoleculeTable* theMoleculeTable = G4MoleculeTable::Instance();
65 65
66 G4MoleculeDefinitionIterator iterator = 66 G4MoleculeDefinitionIterator iterator =
67 theMoleculeTable->GetDefintionIterator() 67 theMoleculeTable->GetDefintionIterator();
68 68
69 iterator.reset(); 69 iterator.reset();
70 while (iterator()) 70 while (iterator())
71 { 71 {
72 G4MoleculeDefinition* moleculeDef = iterat 72 G4MoleculeDefinition* moleculeDef = iterator.value();
73 BuildPhysicsTable(moleculeDef); 73 BuildPhysicsTable(moleculeDef);
74 } 74 }
75 } 75 }
76 76
77 void G4VUserChemistryList::BuildPhysicsTable(G 77 void G4VUserChemistryList::BuildPhysicsTable(G4MoleculeDefinition* moleculeDef)
78 { 78 {
79 //Get processes from master thread; 79 //Get processes from master thread;
80 G4ProcessManager* pManager = moleculeDef->Ge 80 G4ProcessManager* pManager = moleculeDef->GetProcessManager();
81 81
82 if (pManager == nullptr) << 82 if (!pManager)
83 { 83 {
84 #ifdef G4VERBOSE 84 #ifdef G4VERBOSE
85 if (verboseLevel > 0) 85 if (verboseLevel > 0)
86 { 86 {
87 G4cout << "G4VUserPhysicsList::BuildPhys 87 G4cout << "G4VUserPhysicsList::BuildPhysicsTable "
88 << " : No Process Manager for " < 88 << " : No Process Manager for " << moleculeDef->GetParticleName()
89 << G4endl; 89 << G4endl;
90 G4cout << moleculeDef->GetParticleName() 90 G4cout << moleculeDef->GetParticleName()
91 << " should be created in your PhysicsLi 91 << " should be created in your PhysicsList" <<G4endl;
92 } 92 }
93 #endif 93 #endif
94 G4Exception("G4VUserChemistryList::BuildPh 94 G4Exception("G4VUserChemistryList::BuildPhysicsTable",
95 "Run0271", FatalException, 95 "Run0271", FatalException,
96 "No process manager"); 96 "No process manager");
97 return; 97 return;
98 } 98 }
99 99
100 G4ProcessManager* pManagerShadow = moleculeD 100 G4ProcessManager* pManagerShadow = moleculeDef->GetMasterProcessManager();
101 G4ProcessVector* pVector = pManager->GetProc 101 G4ProcessVector* pVector = pManager->GetProcessList();
102 if (pVector == nullptr) << 102 if (!pVector)
103 { 103 {
104 #ifdef G4VERBOSE 104 #ifdef G4VERBOSE
105 if (verboseLevel > 0) 105 if (verboseLevel > 0)
106 { 106 {
107 G4cout << "G4VUserChemistryList::BuildPh 107 G4cout << "G4VUserChemistryList::BuildPhysicsTable "
108 << " : No Process Vector for " << 108 << " : No Process Vector for " << moleculeDef->GetParticleName()
109 << G4endl; 109 << G4endl;
110 } 110 }
111 #endif 111 #endif
112 G4Exception("G4VUserChemistryList::BuildPh 112 G4Exception("G4VUserChemistryList::BuildPhysicsTable",
113 "Run0272", FatalException, 113 "Run0272", FatalException,
114 "No process Vector"); 114 "No process Vector");
115 return; 115 return;
116 } 116 }
117 #ifdef G4VERBOSE 117 #ifdef G4VERBOSE
118 if (verboseLevel > 2) 118 if (verboseLevel > 2)
119 { 119 {
120 G4cout << "G4VUserChemistryList::BuildPhys 120 G4cout << "G4VUserChemistryList::BuildPhysicsTable %%%%%% "
121 << moleculeDef->GetParticleName() < 121 << moleculeDef->GetParticleName() << G4endl;
122 G4cout << " ProcessManager : " << pManager 122 G4cout << " ProcessManager : " << pManager
123 << " ProcessManagerShadow : " << pM 123 << " ProcessManagerShadow : " << pManagerShadow << G4endl;
124 for(G4int iv1=0;iv1<(G4int)pVector->size() << 124 for(std::size_t iv1=0;iv1<pVector->size();++iv1)
125 { 125 {
126 G4cout << " " << iv1 << " - " << (*pVec 126 G4cout << " " << iv1 << " - " << (*pVector)[iv1]->GetProcessName()
127 << G4endl; 127 << G4endl;
128 } 128 }
129 G4cout << "------------------------------- 129 G4cout << "--------------------------------------------------------------"
130 << G4endl; 130 << G4endl;
131 G4ProcessVector* pVectorShadow = pManagerS 131 G4ProcessVector* pVectorShadow = pManagerShadow->GetProcessList();
132 132
133 for(G4int iv2=0;iv2<(G4int)pVectorShadow-> << 133 for(std::size_t iv2=0;iv2<pVectorShadow->size();++iv2)
134 { 134 {
135 G4cout << " " << iv2 << " - " << (*pVec 135 G4cout << " " << iv2 << " - " << (*pVectorShadow)[iv2]->GetProcessName()
136 << G4endl; 136 << G4endl;
137 } 137 }
138 } 138 }
139 #endif 139 #endif
140 for (G4int j = 0; j < (G4int)pVector->size() << 140 for (std::size_t j = 0; j < pVector->size(); ++j)
141 { 141 {
142 //Andrea July 16th 2013 : migration to new 142 //Andrea July 16th 2013 : migration to new interface...
143 //Infer if we are in a worker thread or ma 143 //Infer if we are in a worker thread or master thread
144 //Master thread is the one in which the pr 144 //Master thread is the one in which the process manager
145 // and process manager shadow pointers are 145 // and process manager shadow pointers are the same
146 if (pManagerShadow == pManager) 146 if (pManagerShadow == pManager)
147 { 147 {
148 (*pVector)[j]->BuildPhysicsTable(*molecu 148 (*pVector)[j]->BuildPhysicsTable(*moleculeDef);
149 } 149 }
150 else 150 else
151 { 151 {
152 (*pVector)[j]->BuildWorkerPhysicsTable(* 152 (*pVector)[j]->BuildWorkerPhysicsTable(*moleculeDef);
153 } 153 }
154 154
155 } 155 }
156 } 156 }
157 157