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24 // 24 //
25 #include "G4DNAMesh.hh" 25 #include "G4DNAMesh.hh"
26 #include <algorithm> 26 #include <algorithm>
27 #include <ostream> 27 #include <ostream>
28 #include "G4ITTrackHolder.hh" 28 #include "G4ITTrackHolder.hh"
29 29
30 std::ostream& operator<<(std::ostream& stream, 30 std::ostream& operator<<(std::ostream& stream, const G4VDNAMesh::Index& rhs)
31 { 31 {
32 stream << "{" << rhs.x << ", " << rhs.y << " 32 stream << "{" << rhs.x << ", " << rhs.y << ", " << rhs.z << "}";
33 return stream; 33 return stream;
34 } 34 }
35 35
36 G4DNAMesh::Voxel& G4DNAMesh::GetVoxel(const In 36 G4DNAMesh::Voxel& G4DNAMesh::GetVoxel(const Index& key)
37 { 37 {
38 auto iter = fIndexMap.find(key); 38 auto iter = fIndexMap.find(key);
39 if(iter == fIndexMap.end()) 39 if(iter == fIndexMap.end())
40 { 40 {
41 auto box = GetBoundingBox(key); 41 auto box = GetBoundingBox(key);
42 Data mapList; 42 Data mapList;
43 G4DNAMesh::Voxel& voxel = 43 G4DNAMesh::Voxel& voxel =
44 fVoxelVector.emplace_back(std::make_tupl 44 fVoxelVector.emplace_back(std::make_tuple(key, box, std::move(mapList)));
45 fIndexMap[key] = G4int(fVoxelVector.size() 45 fIndexMap[key] = G4int(fVoxelVector.size() - 1);
46 return voxel; 46 return voxel;
47 } 47 }
48 << 48 else
49 auto index = fIndexMap[key]; << 49 {
50 return fVoxelVector[index]; << 50 auto index = fIndexMap[key];
>> 51 return fVoxelVector[index];
>> 52 }
51 } 53 }
52 54
53 G4DNAMesh::G4DNAMesh(const G4DNABoundingBox& b 55 G4DNAMesh::G4DNAMesh(const G4DNABoundingBox& boundingBox, G4int pixel)
54 : fpBoundingMesh(&boundingBox) 56 : fpBoundingMesh(&boundingBox)
55 , fResolution((2 * boundingBox.halfSideLengt 57 , fResolution((2 * boundingBox.halfSideLengthInY() / pixel))
56 {} 58 {}
57 59
58 G4DNAMesh::~G4DNAMesh() { Reset(); } 60 G4DNAMesh::~G4DNAMesh() { Reset(); }
59 61
60 G4DNAMesh::Data& G4DNAMesh::GetVoxelMapList(co 62 G4DNAMesh::Data& G4DNAMesh::GetVoxelMapList(const Index& key)
61 { 63 {
62 auto& pVoxel = GetVoxel(key); 64 auto& pVoxel = GetVoxel(key);
63 return std::get<2>(pVoxel); 65 return std::get<2>(pVoxel);
64 } 66 }
65 67
66 void G4DNAMesh::PrintMesh() 68 void G4DNAMesh::PrintMesh()
67 { 69 {
68 G4cout << "*********PrintMesh::Size : " << f 70 G4cout << "*********PrintMesh::Size : " << fVoxelVector.size() << G4endl;
69 for(const auto& iter : fVoxelVector) 71 for(const auto& iter : fVoxelVector)
70 { 72 {
71 auto data = std::get<2>(iter); 73 auto data = std::get<2>(iter);
72 G4cout << "Index : " << std::get<0>(iter) 74 G4cout << "Index : " << std::get<0>(iter)
73 << " number of type : " << std::get 75 << " number of type : " << std::get<2>(iter).size() << G4endl;
74 for(const auto& it : data) 76 for(const auto& it : data)
75 { 77 {
76 G4cout << "_____________" << it.first->G 78 G4cout << "_____________" << it.first->GetName() << " : " << it.second
77 << G4endl; 79 << G4endl;
78 } 80 }
79 G4cout << G4endl; 81 G4cout << G4endl;
80 } 82 }
81 G4cout << G4endl; 83 G4cout << G4endl;
82 } 84 }
83 85
84 G4int G4DNAMesh::GetNumberOfType(G4DNAMesh::Mo 86 G4int G4DNAMesh::GetNumberOfType(G4DNAMesh::MolType type) const
85 { 87 {
86 G4int output = 0; 88 G4int output = 0;
87 89
88 for(const auto& iter : fVoxelVector) 90 for(const auto& iter : fVoxelVector)
89 { 91 {
90 auto data = std::get<2>(iter); 92 auto data = std::get<2>(iter);
91 auto it = data.find(type); 93 auto it = data.find(type);
92 if(it != data.end()) 94 if(it != data.end())
93 { 95 {
94 output += it->second; 96 output += it->second;
95 } 97 }
96 } 98 }
97 return output; 99 return output;
98 } 100 }
99 101
100 void G4DNAMesh::PrintVoxel(const Index& index) 102 void G4DNAMesh::PrintVoxel(const Index& index)
101 { 103 {
102 G4cout << "*********PrintVoxel::"; 104 G4cout << "*********PrintVoxel::";
103 G4cout << " index : " << index 105 G4cout << " index : " << index
104 << " number of type : " << this->GetV 106 << " number of type : " << this->GetVoxelMapList(index).size()
105 << G4endl; 107 << G4endl;
106 108
107 for(const auto& it : this->GetVoxelMapList(i 109 for(const auto& it : this->GetVoxelMapList(index))
108 { 110 {
109 G4cout << "_____________" << it.first->Get 111 G4cout << "_____________" << it.first->GetName() << " : " << it.second
110 << G4endl; 112 << G4endl;
111 } 113 }
112 G4cout << G4endl; 114 G4cout << G4endl;
113 } 115 }
114 116
115 void G4DNAMesh::InitializeVoxel(const Index& i 117 void G4DNAMesh::InitializeVoxel(const Index& index, Data&& mapList)
116 { 118 {
117 auto& pVoxel = GetVoxel(index); 119 auto& pVoxel = GetVoxel(index);
118 std::get<2>(pVoxel) = std::move(mapList); 120 std::get<2>(pVoxel) = std::move(mapList);
119 } 121 }
120 122
121 G4DNABoundingBox G4DNAMesh::GetBoundingBox(con 123 G4DNABoundingBox G4DNAMesh::GetBoundingBox(const Index& index)
122 { 124 {
123 auto xlo = fpBoundingMesh->Getxlo() + index. 125 auto xlo = fpBoundingMesh->Getxlo() + index.x * fResolution;
124 auto ylo = fpBoundingMesh->Getylo() + index. 126 auto ylo = fpBoundingMesh->Getylo() + index.y * fResolution;
125 auto zlo = fpBoundingMesh->Getzlo() + index. 127 auto zlo = fpBoundingMesh->Getzlo() + index.z * fResolution;
126 auto xhi = fpBoundingMesh->Getxlo() + (index 128 auto xhi = fpBoundingMesh->Getxlo() + (index.x + 1) * fResolution;
127 auto yhi = fpBoundingMesh->Getylo() + (index 129 auto yhi = fpBoundingMesh->Getylo() + (index.y + 1) * fResolution;
128 auto zhi = fpBoundingMesh->Getzlo() + (index 130 auto zhi = fpBoundingMesh->Getzlo() + (index.z + 1) * fResolution;
129 return G4DNABoundingBox({ xhi, xlo, yhi, ylo 131 return G4DNABoundingBox({ xhi, xlo, yhi, ylo, zhi, zlo });
130 } 132 }
131 133
132 void G4DNAMesh::Reset() 134 void G4DNAMesh::Reset()
133 { 135 {
134 fIndexMap.clear(); 136 fIndexMap.clear();
135 fVoxelVector.clear(); 137 fVoxelVector.clear();
136 } 138 }
137 139
138 const G4DNABoundingBox& G4DNAMesh::GetBounding 140 const G4DNABoundingBox& G4DNAMesh::GetBoundingBox() const
139 { 141 {
140 return *fpBoundingMesh; 142 return *fpBoundingMesh;
141 } 143 }
142 144
143 std::vector<G4DNAMesh::Index> // array is bet 145 std::vector<G4DNAMesh::Index> // array is better ?
144 G4DNAMesh::FindNeighboringVoxels(const Index& 146 G4DNAMesh::FindNeighboringVoxels(const Index& index) const
145 { 147 {
146 std::vector<Index> neighbors; 148 std::vector<Index> neighbors;
147 neighbors.reserve(6); 149 neighbors.reserve(6);
148 auto xMax = (G4int) (std::floor( 150 auto xMax = (G4int) (std::floor(
149 (fpBoundingMesh->Getxhi() - fpBoundingMesh 151 (fpBoundingMesh->Getxhi() - fpBoundingMesh->Getxlo()) / fResolution));
150 auto yMax = (G4int) (std::floor( 152 auto yMax = (G4int) (std::floor(
151 (fpBoundingMesh->Getyhi() - fpBoundingMesh 153 (fpBoundingMesh->Getyhi() - fpBoundingMesh->Getylo()) / fResolution));
152 auto zMax = (G4int) (std::floor( 154 auto zMax = (G4int) (std::floor(
153 (fpBoundingMesh->Getzhi() - fpBoundingMesh 155 (fpBoundingMesh->Getzhi() - fpBoundingMesh->Getzlo()) / fResolution));
154 156
155 if(index.x - 1 >= 0) 157 if(index.x - 1 >= 0)
156 { 158 {
157 neighbors.emplace_back(index.x - 1, index. << 159 neighbors.push_back(Index(index.x - 1, index.y, index.z));
158 } 160 }
159 if(index.y - 1 >= 0) 161 if(index.y - 1 >= 0)
160 { 162 {
161 neighbors.emplace_back(index.x, index.y - << 163 neighbors.push_back(Index(index.x, index.y - 1, index.z));
162 } 164 }
163 if(index.z - 1 >= 0) 165 if(index.z - 1 >= 0)
164 { 166 {
165 neighbors.emplace_back(index.x, index.y, i << 167 neighbors.push_back(Index(index.x, index.y, index.z - 1));
166 } 168 }
167 if(index.x + 1 < xMax) 169 if(index.x + 1 < xMax)
168 { 170 {
169 neighbors.emplace_back(index.x + 1, index. << 171 neighbors.push_back(Index(index.x + 1, index.y, index.z));
170 } 172 }
171 if(index.y + 1 < yMax) 173 if(index.y + 1 < yMax)
172 { 174 {
173 neighbors.emplace_back(index.x, index.y + << 175 neighbors.push_back(Index(index.x, index.y + 1, index.z));
174 } 176 }
175 if(index.z + 1 < zMax) 177 if(index.z + 1 < zMax)
176 { 178 {
177 neighbors.emplace_back(index.x, index.y, i << 179 neighbors.push_back(Index(index.x, index.y, index.z + 1));
178 } 180 }
179 181
180 return neighbors; 182 return neighbors;
181 } 183 }
182 184
183 G4double G4DNAMesh::GetResolution() const { re 185 G4double G4DNAMesh::GetResolution() const { return fResolution; }
184 186
185 G4DNAMesh::Index G4DNAMesh::GetIndex(const G4T 187 G4DNAMesh::Index G4DNAMesh::GetIndex(const G4ThreeVector& position) const
186 { 188 {
187 if(!fpBoundingMesh->contains(position)) 189 if(!fpBoundingMesh->contains(position))
188 { 190 {
189 G4ExceptionDescription exceptionDescriptio 191 G4ExceptionDescription exceptionDescription;
190 exceptionDescription << "the position: " < 192 exceptionDescription << "the position: " << position
191 << " is not in the bo 193 << " is not in the box : " << *fpBoundingMesh;
192 G4Exception("G4DNAMesh::GetKey", "G4DNAMes 194 G4Exception("G4DNAMesh::GetKey", "G4DNAMesh010", FatalErrorInArgument,
193 exceptionDescription); 195 exceptionDescription);
194 } 196 }
195 197
196 G4int dx = 198 G4int dx =
197 std::floor((position.x() - fpBoundingMesh- 199 std::floor((position.x() - fpBoundingMesh->Getxlo()) / fResolution);
198 G4int dy = 200 G4int dy =
199 std::floor((position.y() - fpBoundingMesh- 201 std::floor((position.y() - fpBoundingMesh->Getylo()) / fResolution);
200 G4int dz = 202 G4int dz =
201 std::floor((position.z() - fpBoundingMesh- 203 std::floor((position.z() - fpBoundingMesh->Getzlo()) / fResolution);
202 if(dx < 0 || dy < 0 || dz < 0) 204 if(dx < 0 || dy < 0 || dz < 0)
203 { 205 {
204 G4ExceptionDescription exceptionDescriptio 206 G4ExceptionDescription exceptionDescription;
205 exceptionDescription << "the old index: " 207 exceptionDescription << "the old index: " << position
206 << " to new index : 208 << " to new index : " << Index(dx, dx, dx);
207 G4Exception("G4DNAMesh::CheckIndex", "G4DN 209 G4Exception("G4DNAMesh::CheckIndex", "G4DNAMesh015", FatalErrorInArgument,
208 exceptionDescription); 210 exceptionDescription);
209 } 211 }
210 return Index{ dx, dy, dz }; 212 return Index{ dx, dy, dz };
211 } 213 }
212 214
213 G4VDNAMesh::Index G4DNAMesh::ConvertIndex(cons 215 G4VDNAMesh::Index G4DNAMesh::ConvertIndex(const Index& index,
214 cons 216 const G4int& pixels) const
215 { 217 {
216 G4int xmax = std::floor( 218 G4int xmax = std::floor(
217 (fpBoundingMesh->Getxhi() - fpBoundingMesh 219 (fpBoundingMesh->Getxhi() - fpBoundingMesh->Getxlo()) / fResolution);
218 G4int ymax = std::floor( 220 G4int ymax = std::floor(
219 (fpBoundingMesh->Getyhi() - fpBoundingMesh 221 (fpBoundingMesh->Getyhi() - fpBoundingMesh->Getylo()) / fResolution);
220 G4int zmax = std::floor( 222 G4int zmax = std::floor(
221 (fpBoundingMesh->Getzhi() - fpBoundingMesh 223 (fpBoundingMesh->Getzhi() - fpBoundingMesh->Getzlo()) / fResolution);
222 auto dx = (G4int) (index.x * pixels / xmax); 224 auto dx = (G4int) (index.x * pixels / xmax);
223 auto dy = (G4int) (index.y * pixels / ymax); 225 auto dy = (G4int) (index.y * pixels / ymax);
224 auto dz = (G4int) (index.z * pixels / zmax); 226 auto dz = (G4int) (index.z * pixels / zmax);
225 if(dx < 0 || dy < 0 || dz < 0) 227 if(dx < 0 || dy < 0 || dz < 0)
226 { 228 {
227 G4ExceptionDescription exceptionDescriptio 229 G4ExceptionDescription exceptionDescription;
228 exceptionDescription << "the old index: " 230 exceptionDescription << "the old index: " << index
229 << " to new index : 231 << " to new index : " << Index(dx, dx, dx);
230 G4Exception("G4DNAMesh::CheckIndex", "G4DN 232 G4Exception("G4DNAMesh::CheckIndex", "G4DNAMesh013", FatalErrorInArgument,
231 exceptionDescription); 233 exceptionDescription);
232 } 234 }
233 return Index{ dx, dy, dz }; 235 return Index{ dx, dy, dz };
234 } 236 }
235 237