Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/processes/electromagnetic/dna/models/src/G4DNABornIonisationModel2.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /processes/electromagnetic/dna/models/src/G4DNABornIonisationModel2.cc (Version 11.3.0) and /processes/electromagnetic/dna/models/src/G4DNABornIonisationModel2.cc (Version 8.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27                                                   
 28 #include "G4DNABornIonisationModel2.hh"           
 29 #include "G4PhysicalConstants.hh"                 
 30 #include "G4SystemOfUnits.hh"                     
 31 #include "G4UAtomicDeexcitation.hh"               
 32 #include "G4LossTableManager.hh"                  
 33 #include "G4DNAChemistryManager.hh"               
 34 #include "G4DNAMolecularMaterial.hh"              
 35 #include "G4DNABornAngle.hh"                      
 36 #include "G4DeltaAngle.hh"                        
 37 #include "G4Exp.hh"                               
 38                                                   
 39 //....oooOO0OOooo........oooOO0OOooo........oo    
 40                                                   
 41 using namespace std;                              
 42                                                   
 43 //....oooOO0OOooo........oooOO0OOooo........oo    
 44                                                   
 45 G4DNABornIonisationModel2::G4DNABornIonisation    
 46                                                   
 47 G4VEmModel(nam)                                   
 48 {                                                 
 49   verboseLevel = 0;                               
 50   // Verbosity scale:                             
 51   // 0 = nothing                                  
 52   // 1 = warning for energy non-conservation      
 53   // 2 = details of energy budget                 
 54   // 3 = calculation of cross sections, file o    
 55   // 4 = entering in methods                      
 56                                                   
 57   if (verboseLevel > 0)                           
 58   {                                               
 59     G4cout << "Born ionisation model is constr    
 60   }                                               
 61                                                   
 62   // Mark this model as "applicable" for atomi    
 63                                                   
 64   SetDeexcitationFlag(true);                      
 65   fAtomDeexcitation = nullptr;                    
 66   fParticleChangeForGamma = nullptr;              
 67   fpMolWaterDensity = nullptr;                    
 68   fTableData = nullptr;                           
 69   fLowEnergyLimit = 0;                            
 70   fHighEnergyLimit = 0;                           
 71   fParticleDef = nullptr;                         
 72                                                   
 73   // Define default angular generator             
 74                                                   
 75   SetAngularDistribution(new G4DNABornAngle())    
 76                                                   
 77   // Selection of computation method              
 78                                                   
 79   fasterCode = false;                             
 80                                                   
 81   // Selection of stationary mode                 
 82                                                   
 83   statCode = false;                               
 84                                                   
 85   // Selection of SP scaling                      
 86                                                   
 87   spScaling = true;                               
 88 }                                                 
 89                                                   
 90 //....oooOO0OOooo........oooOO0OOooo........oo    
 91                                                   
 92 G4DNABornIonisationModel2::~G4DNABornIonisatio    
 93 {                                                 
 94   // Cross section                                
 95                                                   
 96                                                   
 97     delete fTableData;                            
 98                                                   
 99   // Final state                                  
100                                                   
101   fVecm.clear();                                  
102 }                                                 
103                                                   
104 //....oooOO0OOooo........oooOO0OOooo........oo    
105                                                   
106 void G4DNABornIonisationModel2::Initialise(con    
107                                            con    
108 {                                                 
109                                                   
110   if (verboseLevel > 3)                           
111   {                                               
112     G4cout << "Calling G4DNABornIonisationMode    
113   }                                               
114                                                   
115   if(fParticleDef != nullptr && particle != fP    
116   {                                               
117     G4ExceptionDescription description;           
118     description << "You are trying to initiali    
119     "for particle "                               
120     << particle->GetParticleName()                
121     << G4endl;                                    
122     description << "G4DNABornIonisationModel2     
123     "for particle:" << fParticleDef->GetPartic    
124     G4Exception("G4DNABornIonisationModel2::In    
125         FatalException,description);              
126   }                                               
127                                                   
128   fParticleDef = particle;                        
129                                                   
130   // Energy limits                                
131   const char* path = G4FindDataDir("G4LEDATA")    
132                                                   
133   // ***                                          
134                                                   
135   G4String particleName = particle->GetParticl    
136   std::ostringstream fullFileName;                
137   fullFileName << path;                           
138                                                   
139   if(particleName == "e-")                        
140   {                                               
141     fTableFile = "dna/sigma_ionisation_e_born"    
142     fLowEnergyLimit = 11.*eV;                     
143     fHighEnergyLimit = 1.*MeV;                    
144                                                   
145     if (fasterCode)                               
146     {                                             
147       fullFileName << "/dna/sigmadiff_cumulate    
148     }                                             
149     else                                          
150     {                                             
151       fullFileName << "/dna/sigmadiff_ionisati    
152     }                                             
153   }                                               
154   else if(particleName == "proton")               
155   {                                               
156     fTableFile = "dna/sigma_ionisation_p_born"    
157     fLowEnergyLimit = 500. * keV;                 
158     fHighEnergyLimit = 100. * MeV;                
159                                                   
160     if (fasterCode)                               
161     {                                             
162       fullFileName << "/dna/sigmadiff_cumulate    
163     }                                             
164     else                                          
165     {                                             
166       fullFileName << "/dna/sigmadiff_ionisati    
167     }                                             
168   }                                               
169                                                   
170   // Cross section                                
171                                                   
172   G4double scaleFactor = (1.e-22 / 3.343) * m*    
173   fTableData = new G4DNACrossSectionDataSet(ne    
174   fTableData->LoadData(fTableFile);               
175                                                   
176   // Final state                                  
177                                                   
178   std::ifstream diffCrossSection(fullFileName.    
179                                                   
180   if (!diffCrossSection)                          
181   {                                               
182     G4ExceptionDescription description;           
183     description << "Missing data file:" << G4e    
184     G4Exception("G4DNABornIonisationModel2::In    
185         FatalException,description);              
186   }                                               
187                                                   
188   // Clear the arrays for re-initialization ca    
189   // March 25th, 2014 - Vaclav Stepan, Sebasti    
190                                                   
191   fTdummyVec.clear();                             
192   fVecm.clear();                                  
193                                                   
194   for (int j=0; j<5; j++)                         
195   {                                               
196     fProbaShellMap[j].clear();                    
197     fDiffCrossSectionData[j].clear();             
198     fNrjTransfData[j].clear();                    
199   }                                               
200                                                   
201   //                                              
202                                                   
203   fTdummyVec.push_back(0.);                       
204   while(!diffCrossSection.eof())                  
205   {                                               
206     G4double tDummy;                              
207     G4double eDummy;                              
208     diffCrossSection>>tDummy>>eDummy;             
209     if (tDummy != fTdummyVec.back()) fTdummyVe    
210                                                   
211     G4double tmp;                                 
212     for (int j=0; j<5; j++)                       
213     {                                             
214       diffCrossSection>> tmp;                     
215                                                   
216       fDiffCrossSectionData[j][tDummy][eDummy]    
217                                                   
218       if (fasterCode)                             
219       {                                           
220         fNrjTransfData[j][tDummy][fDiffCrossSe    
221         fProbaShellMap[j][tDummy].push_back(fD    
222       }                                           
223                                                   
224       // SI - only if eof is not reached          
225       if (!diffCrossSection.eof() && !fasterCo    
226                                                   
227       if (!fasterCode) fVecm[tDummy].push_back    
228                                                   
229     }                                             
230   }                                               
231                                                   
232   //                                              
233   SetLowEnergyLimit(fLowEnergyLimit);             
234   SetHighEnergyLimit(fHighEnergyLimit);           
235                                                   
236   if( verboseLevel>0 )                            
237   {                                               
238     G4cout << "Born ionisation model is initia    
239     << "Energy range: "                           
240     << LowEnergyLimit() / eV << " eV - "          
241     << HighEnergyLimit() / keV << " keV for "     
242     << particle->GetParticleName()                
243     << G4endl;                                    
244   }                                               
245                                                   
246   // Initialize water density pointer             
247                                                   
248   fpMolWaterDensity = G4DNAMolecularMaterial::    
249   GetNumMolPerVolTableFor(G4Material::GetMater    
250                                                   
251   // AD                                           
252                                                   
253   fAtomDeexcitation = G4LossTableManager::Inst    
254                                                   
255   if (isInitialised)                              
256   { return;}                                      
257   fParticleChangeForGamma = GetParticleChangeF    
258   isInitialised = true;                           
259 }                                                 
260                                                   
261 //....oooOO0OOooo........oooOO0OOooo........oo    
262                                                   
263 G4double G4DNABornIonisationModel2::CrossSecti    
264                                                   
265                                                   
266                                                   
267                                                   
268 {                                                 
269   if (verboseLevel > 3)                           
270   {                                               
271     G4cout << "Calling CrossSectionPerVolume()    
272         << G4endl;                                
273   }                                               
274                                                   
275   if (particleDefinition != fParticleDef) retu    
276                                                   
277   // Calculate total cross section for model      
278                                                   
279   G4double sigma=0;                               
280                                                   
281   G4double waterDensity = (*fpMolWaterDensity)    
282                                                   
283   if (ekin >= fLowEnergyLimit && ekin <= fHigh    
284   {                                               
285     sigma = fTableData->FindValue(ekin);          
286                                                   
287     // ICRU49 electronic SP scaling - ZF, SI      
288                                                   
289     if (particleDefinition == G4Proton::Proton    
290     {                                             
291       G4double A = 1.39241700556072800000E-009    
292       G4double B = -8.52610412942622630000E-00    
293       sigma = sigma * G4Exp(A*(ekin/eV)+B);       
294     }                                             
295     //                                            
296   }                                               
297                                                   
298   if (verboseLevel > 2)                           
299   {                                               
300     G4cout << "_______________________________    
301     G4cout << "G4DNABornIonisationModel2 - XS     
302     G4cout << "Kinetic energy(eV)=" << ekin/eV    
303     G4cout << "Cross section per water molecul    
304     G4cout << "Cross section per water molecul    
305     G4cout << "G4DNABornIonisationModel2 - XS     
306   }                                               
307                                                   
308   return sigma*waterDensity;                      
309 }                                                 
310                                                   
311 //....oooOO0OOooo........oooOO0OOooo........oo    
312                                                   
313 void G4DNABornIonisationModel2::SampleSecondar    
314                                                   
315                                                   
316                                                   
317                                                   
318 {                                                 
319                                                   
320   if (verboseLevel > 3)                           
321   {                                               
322     G4cout << "Calling SampleSecondaries() of     
323         << G4endl;                                
324   }                                               
325                                                   
326   G4double k = particle->GetKineticEnergy();      
327                                                   
328   if (k >= fLowEnergyLimit && k <= fHighEnergy    
329   {                                               
330     G4ParticleMomentum primaryDirection = part    
331     G4double particleMass = particle->GetDefin    
332     G4double totalEnergy = k + particleMass;      
333     G4double pSquare = k * (totalEnergy + part    
334     G4double totalMomentum = std::sqrt(pSquare    
335                                                   
336     G4int ionizationShell = 0;                    
337                                                   
338     if (!fasterCode) ionizationShell = RandomS    
339                                                   
340     // SI: The following protection is necessa    
341     //  sigmadiff_ionisation_e_born.dat has no    
342     //  sigmadiff_cumulated_ionisation_e_born.    
343     //  this is due to the fact that the max a    
344     //  strictly above this value have non zer    
345                                                   
346     if (fasterCode)                               
347     do                                            
348     {                                             
349       ionizationShell = RandomSelect(k);          
350     } while (k<19*eV && ionizationShell==2 &&     
351                                                   
352     G4double secondaryKinetic=-1000*eV;           
353                                                   
354     if (!fasterCode)                              
355     {                                             
356       secondaryKinetic = RandomizeEjectedElect    
357     }                                             
358     else                                          
359     {                                             
360       secondaryKinetic = RandomizeEjectedElect    
361     }                                             
362                                                   
363     G4int Z = 8;                                  
364                                                   
365     G4ThreeVector deltaDirection =                
366     GetAngularDistribution()->SampleDirectionF    
367         Z, ionizationShell,                       
368         couple->GetMaterial());                   
369                                                   
370     if (secondaryKinetic>0)                       
371     {                                             
372       auto  dp = new G4DynamicParticle (G4Elec    
373       fvect->push_back(dp);                       
374     }                                             
375                                                   
376     if (particle->GetDefinition() == G4Electro    
377     {                                             
378       G4double deltaTotalMomentum = std::sqrt(    
379                                                   
380       G4double finalPx = totalMomentum*primary    
381       G4double finalPy = totalMomentum*primary    
382       G4double finalPz = totalMomentum*primary    
383       G4double finalMomentum = std::sqrt(final    
384       finalPx /= finalMomentum;                   
385       finalPy /= finalMomentum;                   
386       finalPz /= finalMomentum;                   
387                                                   
388       G4ThreeVector direction;                    
389       direction.set(finalPx,finalPy,finalPz);     
390                                                   
391       fParticleChangeForGamma->ProposeMomentum    
392     }                                             
393                                                   
394     else fParticleChangeForGamma->ProposeMomen    
395                                                   
396     // AM: sample deexcitation                    
397     // here we assume that H_{2}O electronic l    
398     // this can be considered true with a roug    
399                                                   
400     std::size_t secNumberInit = 0;                
401     std::size_t secNumberFinal = 0;               
402                                                   
403     G4double bindingEnergy = 0;                   
404     bindingEnergy = waterStructure.IonisationE    
405                                                   
406     // SI: additional protection if tcs interp    
407     if (k<bindingEnergy) return;                  
408     //                                            
409                                                   
410     G4double scatteredEnergy = k-bindingEnergy    
411                                                   
412     // SI: only atomic deexcitation from K she    
413     if((fAtomDeexcitation != nullptr) && ioniz    
414     {                                             
415       const G4AtomicShell* shell =                
416         fAtomDeexcitation->GetAtomicShell(Z, G    
417       secNumberInit = fvect->size();              
418       fAtomDeexcitation->GenerateParticles(fve    
419       secNumberFinal = fvect->size();             
420                                                   
421       if(secNumberFinal > secNumberInit)          
422       {                                           
423   for (std::size_t i=secNumberInit; i<secNumbe    
424         {                                         
425           //Check if there is enough residual     
426           if (bindingEnergy >= ((*fvect)[i])->    
427           {                                       
428              //Ok, this is a valid secondary:     
429        bindingEnergy -= ((*fvect)[i])->GetKine    
430           }                                       
431           else                                    
432           {                                       
433        //Invalid secondary: not enough energy     
434        //Keep its energy in the local deposit     
435              delete (*fvect)[i];                  
436              (*fvect)[i]=nullptr;                 
437           }                                       
438   }                                               
439       }                                           
440                                                   
441     }                                             
442                                                   
443     //This should never happen                    
444     if(bindingEnergy < 0.0)                       
445      G4Exception("G4DNAEmfietzoglouIonisatioMo    
446                  "em2050",FatalException,"Nega    
447                                                   
448     //bindingEnergy has been decreased            
449     //by the amount of energy taken away by de    
450     if (!statCode)                                
451     {                                             
452       fParticleChangeForGamma->SetProposedKine    
453       fParticleChangeForGamma->ProposeLocalEne    
454     }                                             
455     else                                          
456     {                                             
457       fParticleChangeForGamma->SetProposedKine    
458       fParticleChangeForGamma->ProposeLocalEne    
459     }                                             
460                                                   
461     // TEST //////////////////////////            
462     // if (secondaryKinetic<0) abort();           
463     // if (scatteredEnergy<0) abort();            
464     // if (k-scatteredEnergy-secondaryKinetic-    
465     // if (k-scatteredEnergy<0) abort();          
466     /////////////////////////////////             
467                                                   
468     const G4Track * theIncomingTrack = fPartic    
469     G4DNAChemistryManager::Instance()->CreateW    
470         ionizationShell,                          
471         theIncomingTrack);                        
472   }                                               
473 }                                                 
474                                                   
475 //....oooOO0OOooo........oooOO0OOooo........oo    
476                                                   
477 G4double G4DNABornIonisationModel2::RandomizeE    
478                                                   
479                                                   
480 {                                                 
481   // G4cout << "*** SLOW computation for " <<     
482                                                   
483   if (particleDefinition == G4Electron::Electr    
484   {                                               
485     G4double maximumEnergyTransfer = 0.;          
486     if ((k + waterStructure.IonisationEnergy(s    
487       maximumEnergyTransfer = k;                  
488     else                                          
489       maximumEnergyTransfer = (k + waterStruct    
490                                                   
491     // SI : original method                       
492     /*                                            
493      G4double crossSectionMaximum = 0.;           
494      for(G4double value=waterStructure.Ionisat    
495      {                                            
496      G4double differentialCrossSection = Diffe    
497      if(differentialCrossSection >= crossSecti    
498      }                                            
499     */                                            
500                                                   
501     // SI : alternative method                    
502     G4double crossSectionMaximum = 0.;            
503                                                   
504     G4double minEnergy = waterStructure.Ionisa    
505     G4double maxEnergy = maximumEnergyTransfer    
506     G4int nEnergySteps = 50;                      
507                                                   
508     G4double value(minEnergy);                    
509     G4double stpEnergy(std::pow(maxEnergy / va    
510                                 1. / static_ca    
511     G4int step(nEnergySteps);                     
512     while (step > 0)                              
513     {                                             
514       step--;                                     
515       G4double differentialCrossSection =         
516           DifferentialCrossSection(particleDef    
517                                    k / eV,        
518                                    value / eV,    
519                                    shell);        
520       if (differentialCrossSection >= crossSec    
521         crossSectionMaximum = differentialCros    
522       value *= stpEnergy;                         
523     }                                             
524     //                                            
525                                                   
526     G4double secondaryElectronKineticEnergy =     
527     do                                            
528     {                                             
529       secondaryElectronKineticEnergy = G4Unifo    
530     } while(G4UniformRand()*crossSectionMaximu    
531         DifferentialCrossSection(particleDefin    
532             (secondaryElectronKineticEnergy+wa    
533                                                   
534     return secondaryElectronKineticEnergy;        
535                                                   
536   }                                               
537                                                   
538   if (particleDefinition == G4Proton::ProtonDe    
539   {                                               
540     G4double maximumKineticEnergyTransfer = 4.    
541         * (electron_mass_c2 / proton_mass_c2)     
542                                                   
543     G4double crossSectionMaximum = 0.;            
544     for (G4double value = waterStructure.Ionis    
545         value <= 4. * waterStructure.Ionisatio    
546     {                                             
547       G4double differentialCrossSection =         
548           DifferentialCrossSection(particleDef    
549                                    k / eV,        
550                                    value / eV,    
551                                    shell);        
552       if (differentialCrossSection >= crossSec    
553         crossSectionMaximum = differentialCros    
554     }                                             
555                                                   
556     G4double secondaryElectronKineticEnergy =     
557     do                                            
558     {                                             
559       secondaryElectronKineticEnergy = G4Unifo    
560     } while(G4UniformRand()*crossSectionMaximu    
561         DifferentialCrossSection(particleDefin    
562             (secondaryElectronKineticEnergy+wa    
563                                                   
564     return secondaryElectronKineticEnergy;        
565   }                                               
566                                                   
567   return 0;                                       
568 }                                                 
569                                                   
570 //....oooOO0OOooo........oooOO0OOooo........oo    
571                                                   
572 // The following section is not used anymore b    
573 // GetAngularDistribution()->SampleDirectionFo    
574                                                   
575 /*                                                
576  void G4DNABornIonisationModel2::RandomizeEjec    
577  G4double k,                                      
578  G4double secKinetic,                             
579  G4double & cosTheta,                             
580  G4double & phi )                                 
581  {                                                
582  if (particleDefinition == G4Electron::Electro    
583  {                                                
584  phi = twopi * G4UniformRand();                   
585  if (secKinetic < 50.*eV) cosTheta = (2.*G4Uni    
586  else if (secKinetic <= 200.*eV)                  
587  {                                                
588  if (G4UniformRand() <= 0.1) cosTheta = (2.*G4    
589  else cosTheta = G4UniformRand()*(std::sqrt(2.    
590  }                                                
591  else                                             
592  {                                                
593  G4double sin2O = (1.-secKinetic/k) / (1.+secK    
594  cosTheta = std::sqrt(1.-sin2O);                  
595  }                                                
596  }                                                
597                                                   
598  else if (particleDefinition == G4Proton::Prot    
599  {                                                
600  G4double maxSecKinetic = 4.* (electron_mass_c    
601  phi = twopi * G4UniformRand();                   
602                                                   
603  // cosTheta = std::sqrt(secKinetic / maxSecKi    
604                                                   
605  // Restriction below 100 eV from Emfietzoglou    
606                                                   
607  if (secKinetic>100*eV) cosTheta = std::sqrt(s    
608  else cosTheta = (2.*G4UniformRand())-1.;         
609                                                   
610  }                                                
611  }                                                
612  */                                               
613                                                   
614 //....oooOO0OOooo........oooOO0OOooo........oo    
615 G4double G4DNABornIonisationModel2::Differenti    
616                                                   
617                                                   
618                                                   
619 {                                                 
620   G4double sigma = 0.;                            
621                                                   
622   if (energyTransfer >= waterStructure.Ionisat    
623   {                                               
624     G4double valueT1 = 0;                         
625     G4double valueT2 = 0;                         
626     G4double valueE21 = 0;                        
627     G4double valueE22 = 0;                        
628     G4double valueE12 = 0;                        
629     G4double valueE11 = 0;                        
630                                                   
631     G4double xs11 = 0;                            
632     G4double xs12 = 0;                            
633     G4double xs21 = 0;                            
634     G4double xs22 = 0;                            
635                                                   
636     // Protection against out of boundary acce    
637     if (k==fTdummyVec.back()) k=k*(1.-1e-12);     
638     //                                            
639                                                   
640     // k should be in eV and energy transfer e    
641                                                   
642     auto t2 = std::upper_bound(fTdummyVec.begi    
643                                                   
644                                                   
645                                                   
646     auto t1 = t2 - 1;                             
647                                                   
648     // SI : the following condition avoids sit    
649                                                   
650     if (energyTransfer <= fVecm[(*t1)].back()     
651         && energyTransfer <= fVecm[(*t2)].back    
652     {                                             
653       auto e12 = std::upper_bound(fVecm[(*t1)]    
654                                                   
655                                                   
656       auto e11 = e12 - 1;                         
657                                                   
658       auto e22 = std::upper_bound(fVecm[(*t2)]    
659                                                   
660                                                   
661       auto e21 = e22 - 1;                         
662                                                   
663       valueT1 = *t1;                              
664       valueT2 = *t2;                              
665       valueE21 = *e21;                            
666       valueE22 = *e22;                            
667       valueE12 = *e12;                            
668       valueE11 = *e11;                            
669                                                   
670       xs11 = fDiffCrossSectionData[ionizationL    
671       xs12 = fDiffCrossSectionData[ionizationL    
672       xs21 = fDiffCrossSectionData[ionizationL    
673       xs22 = fDiffCrossSectionData[ionizationL    
674                                                   
675     }                                             
676                                                   
677     G4double xsProduct = xs11 * xs12 * xs21 *     
678     if (xsProduct != 0.)                          
679     {                                             
680       sigma = QuadInterpolator(valueE11,          
681                                valueE12,          
682                                valueE21,          
683                                valueE22,          
684                                xs11,              
685                                xs12,              
686                                xs21,              
687                                xs22,              
688                                valueT1,           
689                                valueT2,           
690                                k,                 
691                                energyTransfer)    
692     }                                             
693   }                                               
694                                                   
695   return sigma;                                   
696 }                                                 
697                                                   
698 //....oooOO0OOooo........oooOO0OOooo........oo    
699                                                   
700 G4double G4DNABornIonisationModel2::Interpolat    
701                                                   
702                                                   
703                                                   
704                                                   
705 {                                                 
706   G4double value = 0.;                            
707                                                   
708   // Log-log interpolation by default             
709                                                   
710   if (e1 != 0 && e2 != 0 && (std::log10(e2) -     
711       && !fasterCode)                             
712   {                                               
713     G4double a = (std::log10(xs2) - std::log10    
714         / (std::log10(e2) - std::log10(e1));      
715     G4double b = std::log10(xs2) - a * std::lo    
716     G4double sigma = a * std::log10(e) + b;       
717     value = (std::pow(10., sigma));               
718   }                                               
719                                                   
720   // Switch to lin-lin interpolation              
721   /*                                              
722    if ((e2-e1)!=0)                                
723    {                                              
724    G4double d1 = xs1;                             
725    G4double d2 = xs2;                             
726    value = (d1 + (d2 - d1)*(e - e1)/ (e2 - e1)    
727    }                                              
728   */                                              
729                                                   
730   // Switch to log-lin interpolation for faste    
731   if ((e2 - e1) != 0 && xs1 != 0 && xs2 != 0 &    
732   {                                               
733     G4double d1 = std::log10(xs1);                
734     G4double d2 = std::log10(xs2);                
735     value = std::pow(10., (d1 + (d2 - d1) * (e    
736   }                                               
737                                                   
738   // Switch to lin-lin interpolation for faste    
739   // in case one of xs1 or xs2 (=cum proba) va    
740                                                   
741   if ((e2 - e1) != 0 && (xs1 == 0 || xs2 == 0)    
742   {                                               
743     G4double d1 = xs1;                            
744     G4double d2 = xs2;                            
745     value = (d1 + (d2 - d1) * (e - e1) / (e2 -    
746   }                                               
747                                                   
748   /*                                              
749    G4cout                                         
750    << e1 << " "                                   
751    << e2 << " "                                   
752    << e  << " "                                   
753    << xs1 << " "                                  
754    << xs2 << " "                                  
755    << value                                       
756    << G4endl;                                     
757   */                                              
758                                                   
759   return value;                                   
760 }                                                 
761                                                   
762 //....oooOO0OOooo........oooOO0OOooo........oo    
763                                                   
764 G4double G4DNABornIonisationModel2::QuadInterp    
765                                                   
766                                                   
767                                                   
768                                                   
769                                                   
770                                                   
771                                                   
772                                                   
773                                                   
774                                                   
775                                                   
776 {                                                 
777   G4double interpolatedvalue1 = Interpolate(e1    
778   G4double interpolatedvalue2 = Interpolate(e2    
779   G4double value = Interpolate(t1,                
780                                t2,                
781                                t,                 
782                                interpolatedval    
783                                interpolatedval    
784                                                   
785   return value;                                   
786 }                                                 
787                                                   
788 //....oooOO0OOooo........oooOO0OOooo........oo    
789                                                   
790 G4double G4DNABornIonisationModel2::GetPartial    
791                                                   
792                                                   
793                                                   
794 {                                                 
795   return fTableData->GetComponent(level)->Find    
796 }                                                 
797                                                   
798 //....oooOO0OOooo........oooOO0OOooo........oo    
799                                                   
800 G4int G4DNABornIonisationModel2::RandomSelect(    
801 {                                                 
802   G4int level = 0;                                
803                                                   
804   auto  valuesBuffer = new G4double[fTableData    
805   const auto  n = (G4int)fTableData->NumberOfC    
806   G4int i(n);                                     
807   G4double value = 0.;                            
808                                                   
809   while (i > 0)                                   
810   {                                               
811     i--;                                          
812     valuesBuffer[i] = fTableData->GetComponent    
813     value += valuesBuffer[i];                     
814   }                                               
815                                                   
816   value *= G4UniformRand();                       
817                                                   
818   i = n;                                          
819                                                   
820   while (i > 0)                                   
821   {                                               
822     i--;                                          
823                                                   
824     if (valuesBuffer[i] > value)                  
825     {                                             
826       delete[] valuesBuffer;                      
827       return i;                                   
828     }                                             
829     value -= valuesBuffer[i];                     
830   }                                               
831                                                   
832                                                   
833     delete[] valuesBuffer;                        
834                                                   
835   return level;                                   
836 }                                                 
837                                                   
838 //....oooOO0OOooo........oooOO0OOooo........oo    
839                                                   
840 G4double G4DNABornIonisationModel2::RandomizeE    
841                                                   
842                                                   
843 {                                                 
844   // G4cout << "*** FAST computation for " <<     
845                                                   
846   G4double secondaryElectronKineticEnergy = 0.    
847                                                   
848   G4double random = G4UniformRand();              
849                                                   
850   secondaryElectronKineticEnergy = TransferedE    
851                                                   
852                                                   
853                                                   
854       - waterStructure.IonisationEnergy(shell)    
855                                                   
856   // G4cout << TransferedEnergy(particleDefini    
857   if (secondaryElectronKineticEnergy < 0.)        
858     return 0.;                                    
859   //                                              
860                                                   
861   return secondaryElectronKineticEnergy;          
862 }                                                 
863                                                   
864 //....oooOO0OOooo........oooOO0OOooo........oo    
865                                                   
866 G4double G4DNABornIonisationModel2::Transfered    
867                                                   
868                                                   
869                                                   
870 {                                                 
871                                                   
872   G4double nrj = 0.;                              
873                                                   
874   G4double valueK1 = 0;                           
875   G4double valueK2 = 0;                           
876   G4double valuePROB21 = 0;                       
877   G4double valuePROB22 = 0;                       
878   G4double valuePROB12 = 0;                       
879   G4double valuePROB11 = 0;                       
880                                                   
881   G4double nrjTransf11 = 0;                       
882   G4double nrjTransf12 = 0;                       
883   G4double nrjTransf21 = 0;                       
884   G4double nrjTransf22 = 0;                       
885                                                   
886   // Protection against out of boundary access    
887   if (k==fTdummyVec.back()) k=k*(1.-1e-12);       
888   //                                              
889                                                   
890   // k should be in eV                            
891   auto k2 = std::upper_bound(fTdummyVec.begin(    
892                                                   
893                                                   
894   auto k1 = k2 - 1;                               
895                                                   
896   /*                                              
897    G4cout << "----> k=" << k                      
898    << " " << *k1                                  
899    << " " << *k2                                  
900    << " " << random                               
901    << " " << ionizationLevelIndex                 
902    << " " << eProbaShellMap[ionizationLevelInd    
903    << " " << eProbaShellMap[ionizationLevelInd    
904    << G4endl;                                     
905   */                                              
906                                                   
907   // SI : the following condition avoids situa    
908   if (random <= fProbaShellMap[ionizationLevel    
909       && random <= fProbaShellMap[ionizationLe    
910   {                                               
911     auto prob12 =                                 
912         std::upper_bound(fProbaShellMap[ioniza    
913                          fProbaShellMap[ioniza    
914                          random);                 
915                                                   
916     auto prob11 = prob12 - 1;                     
917                                                   
918     auto prob22 =                                 
919         std::upper_bound(fProbaShellMap[ioniza    
920                          fProbaShellMap[ioniza    
921                          random);                 
922                                                   
923     auto prob21 = prob22 - 1;                     
924                                                   
925     valueK1 = *k1;                                
926     valueK2 = *k2;                                
927     valuePROB21 = *prob21;                        
928     valuePROB22 = *prob22;                        
929     valuePROB12 = *prob12;                        
930     valuePROB11 = *prob11;                        
931                                                   
932     /*                                            
933      G4cout << "        " << random << " " <<     
934      << valuePROB12 << " " << valuePROB21 << "    
935     */                                            
936                                                   
937     nrjTransf11 = fNrjTransfData[ionizationLev    
938     nrjTransf12 = fNrjTransfData[ionizationLev    
939     nrjTransf21 = fNrjTransfData[ionizationLev    
940     nrjTransf22 = fNrjTransfData[ionizationLev    
941                                                   
942     /*                                            
943      G4cout << "        " << ionizationLevelIn    
944      << random << " " <<valueK1 << " " << valu    
945                                                   
946      G4cout << "        " << random << " " <<     
947      << nrjTransf12 << " " << nrjTransf21 << "    
948     */                                            
949                                                   
950   }                                               
951   // Avoids cases where cum xs is zero for k1     
952   if (random > fProbaShellMap[ionizationLevelI    
953   {                                               
954     auto prob22 =                                 
955         std::upper_bound(fProbaShellMap[ioniza    
956                          fProbaShellMap[ioniza    
957                          random);                 
958                                                   
959     auto prob21 = prob22 - 1;                     
960                                                   
961     valueK1 = *k1;                                
962     valueK2 = *k2;                                
963     valuePROB21 = *prob21;                        
964     valuePROB22 = *prob22;                        
965                                                   
966     // G4cout << "        " << random << " " <    
967                                                   
968     nrjTransf21 = fNrjTransfData[ionizationLev    
969     nrjTransf22 = fNrjTransfData[ionizationLev    
970                                                   
971     G4double interpolatedvalue2 = Interpolate(    
972                                                   
973                                                   
974                                                   
975                                                   
976                                                   
977     // zeros are explicitly set                   
978                                                   
979     G4double value = Interpolate(valueK1, valu    
980                                                   
981     /*                                            
982      G4cout << "        " << ionizationLevelIn    
983      << random << " " <<valueK1 << " " << valu    
984                                                   
985      G4cout << "        " << random << " " <<     
986      << nrjTransf12 << " " << nrjTransf21 << "    
987                                                   
988      G4cout << "ici" << " " << value << G4endl    
989     */                                            
990                                                   
991     return value;                                 
992   }                                               
993                                                   
994   // End electron and proton cases                
995                                                   
996   G4double nrjTransfProduct = nrjTransf11 * nr    
997       * nrjTransf22;                              
998   //G4cout << "nrjTransfProduct=" << nrjTransf    
999                                                   
1000   if (nrjTransfProduct != 0.)                    
1001   {                                              
1002     nrj = QuadInterpolator(valuePROB11,          
1003                            valuePROB12,          
1004                            valuePROB21,          
1005                            valuePROB22,          
1006                            nrjTransf11,          
1007                            nrjTransf12,          
1008                            nrjTransf21,          
1009                            nrjTransf22,          
1010                            valueK1,              
1011                            valueK2,              
1012                            k,                    
1013                            random);              
1014   }                                              
1015   // G4cout << nrj << endl;                      
1016                                                  
1017   return nrj;                                    
1018 }                                                
1019