Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/processes/electromagnetic/dna/models/include/G4DNASmoluchowskiReactionModel.hh

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /processes/electromagnetic/dna/models/include/G4DNASmoluchowskiReactionModel.hh (Version 11.3.0) and /processes/electromagnetic/dna/models/include/G4DNASmoluchowskiReactionModel.hh (Version 9.6.p4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
                                                   >>  26 // $Id: G4DNASmoluchowskiReactionModel.hh 65695 2012-11-27 11:39:12Z gunter $
 26 //                                                 27 //
 27 // Author: Mathieu Karamitros                  <<  28 // Author: Mathieu Karamitros (kara (AT) cenbg . in2p3 . fr) 
 28                                                << 
 29 // The code is developed in the framework of t << 
 30 //                                             << 
 31 // We would be very happy hearing from you, se << 
 32 //                                             << 
 33 // In order for Geant4-DNA to be maintained an << 
 34 // article citations are crucial.              << 
 35 // If you use Geant4-DNA chemistry and you pub << 
 36 // in addition to the general paper on Geant4- << 
 37 //                                                 29 //
 38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) <<  30 // WARNING : This class is released as a prototype.
                                                   >>  31 // It might strongly evolve or even disapear in the next releases.
 39 //                                                 32 //
 40 // we would be very happy if you could please  <<  33 // History:
 41 // reference papers on chemistry:              <<  34 // -----------
                                                   >>  35 // 10 Oct 2011 M.Karamitros created
 42 //                                                 36 //
 43 // J. Comput. Phys. 274 (2014) 841-882         <<  37 // -------------------------------------------------------------------
 44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508      << 
 45                                                    38 
 46 #pragma once                                   <<  39 #ifndef G4DiffControlledReactionRadius_
                                                   >>  40 #define G4DiffControlledReactionRadius_
 47                                                    41 
                                                   >>  42 #include "AddClone_def.hh"
 48 #include "G4VDNAReactionModel.hh"                  43 #include "G4VDNAReactionModel.hh"
 49 #include <vector>                                  44 #include <vector>
 50                                                    45 
 51 class G4DNAMolecularReactionData;                  46 class G4DNAMolecularReactionData;
 52                                                    47 
 53 /**                                                48 /**
 54   * G4DNASmoluchowskiReactionModel should be u     49   * G4DNASmoluchowskiReactionModel should be used
 55   * for very fast reactions (high reaction rat     50   * for very fast reactions (high reaction rate) : the reactions between
 56   * reactants occuring at encounter.               51   * reactants occuring at encounter.
 57   * When the time step is constrained this mod     52   * When the time step is constrained this model
 58   * uses brownian bridge : "Absorbing (Smoluch     53   * uses brownian bridge : "Absorbing (Smoluchowski) boundary condition"
 59   * Reference : On the simulation of diffusion     54   * Reference : On the simulation of diffusion processes close to boundaries,
 60   * N. J. B. Green, Molecular Physics, 65: 6,      55   * N. J. B. Green, Molecular Physics, 65: 6, 1399 — 1408(1988)
 61   */                                               56   */
 62                                                    57 
 63 class G4DNASmoluchowskiReactionModel : public      58 class G4DNASmoluchowskiReactionModel : public G4VDNAReactionModel
 64 {                                                  59 {
 65 public :                                           60 public :
 66     G4DNASmoluchowskiReactionModel();              61     G4DNASmoluchowskiReactionModel();
 67     ~G4DNASmoluchowskiReactionModel() override <<  62     virtual ~G4DNASmoluchowskiReactionModel();
 68                                                    63 
 69     G4DNASmoluchowskiReactionModel(const G4DNA <<  64     G4DNASmoluchowskiReactionModel(const G4DNASmoluchowskiReactionModel&);
 70     G4DNASmoluchowskiReactionModel& operator=( << 
 71                                                    65 
 72     void Initialise(const G4MolecularConfigura <<  66     G4IT_ADD_CLONE(G4VDNAReactionModel, G4DNASmoluchowskiReactionModel)
 73     void InitialiseToPrint(const G4MolecularCo << 
 74     G4double GetReactionRadius(const G4Molecul << 
 75                                        const G << 
 76     G4double GetReactionRadius(const G4int&) o << 
 77                                                    67 
 78     G4bool FindReaction(const G4Track&,        <<  68     virtual void Initialise(const G4Molecule*, const G4Track&) ;
                                                   >>  69     virtual void InitialiseToPrint(const G4Molecule*) ;
                                                   >>  70     virtual G4double GetReactionRadius(const G4Molecule*, const G4Molecule*);
                                                   >>  71     virtual G4double GetReactionRadius(const G4int);
                                                   >>  72 
                                                   >>  73     virtual G4bool FindReaction(const G4Track&,
 79                                 const G4Track&     74                                 const G4Track&,
 80                                 G4double /*rea <<  75                                 const G4double /*reactionRadius*/,
 81                                 G4double& /*se     76                                 G4double& /*separationDistance*/,
 82                                 G4bool /*along <<  77                                 const G4bool /*alongStepInteraction*/) ;
 83                                                    78 
 84 private :                                          79 private :
 85     const std::vector<const G4DNAMolecularReac <<  80     const std::vector<const G4DNAMolecularReactionData*>* fReactionData ;
                                                   >>  81     G4DNASmoluchowskiReactionModel& operator=(const G4DNASmoluchowskiReactionModel&);
 86 };                                                 82 };
                                                   >>  83 
                                                   >>  84 #endif
 87                                                    85