Geant4 Cross Reference |
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Please see the license in the file LICENSE and URL above * 16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. * 17 // * 17 // * * 18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and * 19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. * 20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or * 21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its * 22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your * 23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. * 24 // ******************************************* 24 // ******************************************************************** 25 // 25 // >> 26 // $Id: G4DNASmoluchowskiReactionModel.hh 65695 2012-11-27 11:39:12Z gunter $ 26 // 27 // 27 // Author: Mathieu Karamitros << 28 // Author: Mathieu Karamitros (kara (AT) cenbg . in2p3 . fr) 28 << 29 // The code is developed in the framework of t << 30 // << 31 // We would be very happy hearing from you, se << 32 // << 33 // In order for Geant4-DNA to be maintained an << 34 // article citations are crucial. << 35 // If you use Geant4-DNA chemistry and you pub << 36 // in addition to the general paper on Geant4- << 37 // 29 // 38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) << 30 // WARNING : This class is released as a prototype. >> 31 // It might strongly evolve or even disapear in the next releases. 39 // 32 // 40 // we would be very happy if you could please << 33 // History: 41 // reference papers on chemistry: << 34 // ----------- >> 35 // 10 Oct 2011 M.Karamitros created 42 // 36 // 43 // J. Comput. Phys. 274 (2014) 841-882 << 37 // ------------------------------------------------------------------- 44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508 << 45 38 46 #pragma once << 39 #ifndef G4DiffControlledReactionRadius_ >> 40 #define G4DiffControlledReactionRadius_ 47 41 >> 42 #include "AddClone_def.hh" 48 #include "G4VDNAReactionModel.hh" 43 #include "G4VDNAReactionModel.hh" 49 #include <vector> 44 #include <vector> 50 45 51 class G4DNAMolecularReactionData; 46 class G4DNAMolecularReactionData; 52 47 53 /** 48 /** 54 * G4DNASmoluchowskiReactionModel should be u 49 * G4DNASmoluchowskiReactionModel should be used 55 * for very fast reactions (high reaction rat 50 * for very fast reactions (high reaction rate) : the reactions between 56 * reactants occuring at encounter. 51 * reactants occuring at encounter. 57 * When the time step is constrained this mod 52 * When the time step is constrained this model 58 * uses brownian bridge : "Absorbing (Smoluch 53 * uses brownian bridge : "Absorbing (Smoluchowski) boundary condition" 59 * Reference : On the simulation of diffusion 54 * Reference : On the simulation of diffusion processes close to boundaries, 60 * N. J. B. Green, Molecular Physics, 65: 6, 55 * N. J. B. Green, Molecular Physics, 65: 6, 1399 — 1408(1988) 61 */ 56 */ 62 57 63 class G4DNASmoluchowskiReactionModel : public 58 class G4DNASmoluchowskiReactionModel : public G4VDNAReactionModel 64 { 59 { 65 public : 60 public : 66 G4DNASmoluchowskiReactionModel(); 61 G4DNASmoluchowskiReactionModel(); 67 ~G4DNASmoluchowskiReactionModel() override << 62 virtual ~G4DNASmoluchowskiReactionModel(); 68 63 69 G4DNASmoluchowskiReactionModel(const G4DNA << 64 G4DNASmoluchowskiReactionModel(const G4DNASmoluchowskiReactionModel&); 70 G4DNASmoluchowskiReactionModel& operator=( << 71 65 72 void Initialise(const G4MolecularConfigura << 66 G4IT_ADD_CLONE(G4VDNAReactionModel, G4DNASmoluchowskiReactionModel) 73 void InitialiseToPrint(const G4MolecularCo << 74 G4double GetReactionRadius(const G4Molecul << 75 const G << 76 G4double GetReactionRadius(const G4int&) o << 77 67 78 G4bool FindReaction(const G4Track&, << 68 virtual void Initialise(const G4Molecule*, const G4Track&) ; >> 69 virtual void InitialiseToPrint(const G4Molecule*) ; >> 70 virtual G4double GetReactionRadius(const G4Molecule*, const G4Molecule*); >> 71 virtual G4double GetReactionRadius(const G4int); >> 72 >> 73 virtual G4bool FindReaction(const G4Track&, 79 const G4Track& 74 const G4Track&, 80 G4double /*rea << 75 const G4double /*reactionRadius*/, 81 G4double& /*se 76 G4double& /*separationDistance*/, 82 G4bool /*along << 77 const G4bool /*alongStepInteraction*/) ; 83 78 84 private : 79 private : 85 const std::vector<const G4DNAMolecularReac << 80 const std::vector<const G4DNAMolecularReactionData*>* fReactionData ; >> 81 G4DNASmoluchowskiReactionModel& operator=(const G4DNASmoluchowskiReactionModel&); 86 }; 82 }; >> 83 >> 84 #endif 87 85