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>> 26 // $Id: G4DNASmoluchowskiReactionModel.hh 100802 2016-11-02 14:55:27Z gcosmo $
26 // 27 //
27 // Author: Mathieu Karamitros 28 // Author: Mathieu Karamitros
28 29
29 // The code is developed in the framework of t 30 // The code is developed in the framework of the ESA AO7146
30 // 31 //
31 // We would be very happy hearing from you, se 32 // We would be very happy hearing from you, send us your feedback! :)
32 // 33 //
33 // In order for Geant4-DNA to be maintained an 34 // In order for Geant4-DNA to be maintained and still open-source,
34 // article citations are crucial. 35 // article citations are crucial.
35 // If you use Geant4-DNA chemistry and you pub 36 // If you use Geant4-DNA chemistry and you publish papers about your software,
36 // in addition to the general paper on Geant4- 37 // in addition to the general paper on Geant4-DNA:
37 // 38 //
38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 39 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
39 // 40 //
40 // we would be very happy if you could please 41 // we would be very happy if you could please also cite the following
41 // reference papers on chemistry: 42 // reference papers on chemistry:
42 // 43 //
43 // J. Comput. Phys. 274 (2014) 841-882 44 // J. Comput. Phys. 274 (2014) 841-882
44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508 45 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
45 46
46 #pragma once <<
47 47
>> 48 #ifndef G4DiffControlledReactionRadius_
>> 49 #define G4DiffControlledReactionRadius_
>> 50
>> 51 #include "AddClone_def.hh"
48 #include "G4VDNAReactionModel.hh" 52 #include "G4VDNAReactionModel.hh"
49 #include <vector> 53 #include <vector>
50 54
51 class G4DNAMolecularReactionData; 55 class G4DNAMolecularReactionData;
52 56
53 /** 57 /**
54 * G4DNASmoluchowskiReactionModel should be u 58 * G4DNASmoluchowskiReactionModel should be used
55 * for very fast reactions (high reaction rat 59 * for very fast reactions (high reaction rate) : the reactions between
56 * reactants occuring at encounter. 60 * reactants occuring at encounter.
57 * When the time step is constrained this mod 61 * When the time step is constrained this model
58 * uses brownian bridge : "Absorbing (Smoluch 62 * uses brownian bridge : "Absorbing (Smoluchowski) boundary condition"
59 * Reference : On the simulation of diffusion 63 * Reference : On the simulation of diffusion processes close to boundaries,
60 * N. J. B. Green, Molecular Physics, 65: 6, 64 * N. J. B. Green, Molecular Physics, 65: 6, 1399 — 1408(1988)
61 */ 65 */
62 66
63 class G4DNASmoluchowskiReactionModel : public 67 class G4DNASmoluchowskiReactionModel : public G4VDNAReactionModel
64 { 68 {
65 public : 69 public :
66 G4DNASmoluchowskiReactionModel(); 70 G4DNASmoluchowskiReactionModel();
67 ~G4DNASmoluchowskiReactionModel() override << 71 virtual ~G4DNASmoluchowskiReactionModel();
>> 72
>> 73 G4DNASmoluchowskiReactionModel(const G4DNASmoluchowskiReactionModel&);
68 74
69 G4DNASmoluchowskiReactionModel(const G4DNA << 75 G4IT_ADD_CLONE(G4VDNAReactionModel, G4DNASmoluchowskiReactionModel)
70 G4DNASmoluchowskiReactionModel& operator=( <<
71 76
72 void Initialise(const G4MolecularConfigura << 77 virtual void Initialise(G4MolecularConfiguration*, const G4Track&) ;
73 void InitialiseToPrint(const G4MolecularCo << 78 virtual void InitialiseToPrint(G4MolecularConfiguration*) ;
74 G4double GetReactionRadius(const G4Molecul << 79 virtual G4double GetReactionRadius(G4MolecularConfiguration*,
75 const G << 80 G4MolecularConfiguration*);
76 G4double GetReactionRadius(const G4int&) o << 81 virtual G4double GetReactionRadius(const G4int);
77 82
78 G4bool FindReaction(const G4Track&, << 83 virtual G4bool FindReaction(const G4Track&,
79 const G4Track& 84 const G4Track&,
80 G4double /*rea << 85 const G4double /*reactionRadius*/,
81 G4double& /*se 86 G4double& /*separationDistance*/,
82 G4bool /*along << 87 const G4bool /*alongStepInteraction*/) ;
83 88
84 private : 89 private :
85 const std::vector<const G4DNAMolecularReac << 90 const std::vector<const G4DNAMolecularReactionData*>* fReactionData ;
>> 91 G4DNASmoluchowskiReactionModel& operator=(const G4DNASmoluchowskiReactionModel&);
86 }; 92 };
>> 93
>> 94 #endif
87 95