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>> 26 // $Id: G4DNASmoluchowskiReactionModel.hh 65695 2012-11-27 11:39:12Z gunter $
26 // 27 //
27 // Author: Mathieu Karamitros << 28 // Author: Mathieu Karamitros (kara (AT) cenbg . in2p3 . fr)
28 <<
29 // The code is developed in the framework of t <<
30 // <<
31 // We would be very happy hearing from you, se <<
32 // <<
33 // In order for Geant4-DNA to be maintained an <<
34 // article citations are crucial. <<
35 // If you use Geant4-DNA chemistry and you pub <<
36 // in addition to the general paper on Geant4- <<
37 // 29 //
38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) << 30 // WARNING : This class is released as a prototype.
>> 31 // It might strongly evolve or even disapear in the next releases.
39 // 32 //
40 // we would be very happy if you could please << 33 // History:
41 // reference papers on chemistry: << 34 // -----------
>> 35 // 10 Oct 2011 M.Karamitros created
42 // 36 //
43 // J. Comput. Phys. 274 (2014) 841-882 << 37 // -------------------------------------------------------------------
44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508 <<
45 38
46 #pragma once << 39 #ifndef G4DiffControlledReactionRadius_
>> 40 #define G4DiffControlledReactionRadius_
47 41
>> 42 #include "AddClone_def.hh"
48 #include "G4VDNAReactionModel.hh" 43 #include "G4VDNAReactionModel.hh"
49 #include <vector> 44 #include <vector>
50 45
51 class G4DNAMolecularReactionData; 46 class G4DNAMolecularReactionData;
52 47
53 /** 48 /**
54 * G4DNASmoluchowskiReactionModel should be u 49 * G4DNASmoluchowskiReactionModel should be used
55 * for very fast reactions (high reaction rat 50 * for very fast reactions (high reaction rate) : the reactions between
56 * reactants occuring at encounter. 51 * reactants occuring at encounter.
57 * When the time step is constrained this mod 52 * When the time step is constrained this model
58 * uses brownian bridge : "Absorbing (Smoluch 53 * uses brownian bridge : "Absorbing (Smoluchowski) boundary condition"
59 * Reference : On the simulation of diffusion 54 * Reference : On the simulation of diffusion processes close to boundaries,
60 * N. J. B. Green, Molecular Physics, 65: 6, 55 * N. J. B. Green, Molecular Physics, 65: 6, 1399 — 1408(1988)
61 */ 56 */
62 57
63 class G4DNASmoluchowskiReactionModel : public 58 class G4DNASmoluchowskiReactionModel : public G4VDNAReactionModel
64 { 59 {
65 public : 60 public :
66 G4DNASmoluchowskiReactionModel(); 61 G4DNASmoluchowskiReactionModel();
67 ~G4DNASmoluchowskiReactionModel() override << 62 virtual ~G4DNASmoluchowskiReactionModel();
68 63
69 G4DNASmoluchowskiReactionModel(const G4DNA << 64 G4DNASmoluchowskiReactionModel(const G4DNASmoluchowskiReactionModel&);
70 G4DNASmoluchowskiReactionModel& operator=( <<
71 65
72 void Initialise(const G4MolecularConfigura << 66 G4IT_ADD_CLONE(G4VDNAReactionModel, G4DNASmoluchowskiReactionModel)
73 void InitialiseToPrint(const G4MolecularCo <<
74 G4double GetReactionRadius(const G4Molecul <<
75 const G <<
76 G4double GetReactionRadius(const G4int&) o <<
77 67
78 G4bool FindReaction(const G4Track&, << 68 virtual void Initialise(const G4Molecule*, const G4Track&) ;
>> 69 virtual void InitialiseToPrint(const G4Molecule*) ;
>> 70 virtual G4double GetReactionRadius(const G4Molecule*, const G4Molecule*);
>> 71 virtual G4double GetReactionRadius(const G4int);
>> 72
>> 73 virtual G4bool FindReaction(const G4Track&,
79 const G4Track& 74 const G4Track&,
80 G4double /*rea << 75 const G4double /*reactionRadius*/,
81 G4double& /*se 76 G4double& /*separationDistance*/,
82 G4bool /*along << 77 const G4bool /*alongStepInteraction*/) ;
83 78
84 private : 79 private :
85 const std::vector<const G4DNAMolecularReac << 80 const std::vector<const G4DNAMolecularReactionData*>* fReactionData ;
>> 81 G4DNASmoluchowskiReactionModel& operator=(const G4DNASmoluchowskiReactionModel&);
86 }; 82 };
>> 83
>> 84 #endif
87 85