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>> 26 // $Id: G4DNAMolecularReaction.hh 100802 2016-11-02 14:55:27Z gcosmo $
26 // 27 //
27 // Author: Mathieu Karamitros 28 // Author: Mathieu Karamitros
28 29
29 // The code is developed in the framework of t 30 // The code is developed in the framework of the ESA AO7146
30 // 31 //
31 // We would be very happy hearing from you, se 32 // We would be very happy hearing from you, send us your feedback! :)
32 // 33 //
33 // In order for Geant4-DNA to be maintained an 34 // In order for Geant4-DNA to be maintained and still open-source,
34 // article citations are crucial. 35 // article citations are crucial.
35 // If you use Geant4-DNA chemistry and you pub 36 // If you use Geant4-DNA chemistry and you publish papers about your software,
36 // in addition to the general paper on Geant4- 37 // in addition to the general paper on Geant4-DNA:
37 // 38 //
38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 39 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
39 // 40 //
40 // we would be very happy if you could please 41 // we would be very happy if you could please also cite the following
41 // reference papers on chemistry: 42 // reference papers on chemistry:
42 // 43 //
43 // J. Comput. Phys. 274 (2014) 841-882 44 // J. Comput. Phys. 274 (2014) 841-882
44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508 45 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
45 46
46 47
47 #pragma once << 48 #ifndef G4MOLECULARREACTION_H
>> 49 #define G4MOLECULARREACTION_H
48 50
49 #include <G4VITReactionProcess.hh> 51 #include <G4VITReactionProcess.hh>
50 #include <vector> <<
51 52
52 class G4DNAMolecularReactionTable; 53 class G4DNAMolecularReactionTable;
53 class G4VDNAReactionModel; 54 class G4VDNAReactionModel;
54 class G4ITReactionSet; <<
55 55
56 /** 56 /**
57 * G4DNAMolecularReaction is the reaction pro 57 * G4DNAMolecularReaction is the reaction process
58 * used in G4DNAMolecularStepByStepModel. << 58 * used in G4DNAMolecularStepByStepModel between
59 * It test whether molecules can react after << 59 * two molecules.
60 * If so, the reaction is made. << 60 * After the global track steps, it test whether
61 * \deprecated This class will be removed << 61 * the molecules can react. If so, the reaction is made.
62 */ 62 */
>> 63
63 class G4DNAMolecularReaction : public G4VITRea 64 class G4DNAMolecularReaction : public G4VITReactionProcess
64 { 65 {
65 public: << 66 public:
66 G4DNAMolecularReaction(); << 67 /** Default constructor */
67 explicit G4DNAMolecularReaction(G4VDNAReac << 68 G4DNAMolecularReaction();
68 ~G4DNAMolecularReaction() override = defau << 69 /** Default destructor */
69 G4DNAMolecularReaction(const G4DNAMolecula << 70 virtual ~G4DNAMolecularReaction();
70 G4DNAMolecularReaction& operator=(const G4 << 71 /** Copy constructor
71 << 72 * \param other Object to copy from
72 G4bool TestReactibility(const G4Track&, << 73 */
73 const G4Track&, << 74 G4DNAMolecularReaction(const G4DNAMolecularReaction& other);
74 double currentStep << 75 /** Assignment operator
75 bool userStepTimeL << 76 * \param other Object to assign from
76 << 77 * \return A reference to this
77 std::vector<std::unique_ptr<G4ITReactionCh << 78 */
78 const double, const double, const bool << 79 G4DNAMolecularReaction& operator=(const G4DNAMolecularReaction& other);
79 std::unique_ptr<G4ITReactionChange> MakeRe << 80
80 << 81 G4IT_ADD_CLONE(G4VITReactionProcess, G4DNAMolecularReaction)
81 void SetReactionModel(G4VDNAReactionModel* << 82
82 << 83 /** Given two tracks, it tells you whether they can react
83 protected: << 84 */
84 const G4DNAMolecularReactionTable*& fMolRe << 85 virtual G4bool TestReactibility(const G4Track&,
85 G4VDNAReactionModel* fpReactionModel; << 86 const G4Track&,
>> 87 const double currentStepTime,
>> 88 const double previousStepTime,
>> 89 bool userStepTimeLimit) /*const*/ ;
>> 90
>> 91 /** Will generate the products of the two given tracks
>> 92 */
>> 93 virtual G4ITReactionChange* MakeReaction(const G4Track&, const G4Track&) ;
>> 94
>> 95 inline void SetReactionModel(G4VDNAReactionModel*);
>> 96 inline void SetReactionTable(const G4DNAMolecularReactionTable*);
>> 97
>> 98 inline void SetVerbose(int);
>> 99 // 1 : only when make reaction is called
>> 100 // 2 : both make reaction + test reactibility are called
>> 101
>> 102 protected:
>> 103 const G4DNAMolecularReactionTable*& fMolReactionTable;
>> 104 G4VDNAReactionModel* fReactionModel;
>> 105 G4int fVerbose;
>> 106 G4double fReactionRadius ;
>> 107 G4double fDistance;
>> 108 private:
86 }; 109 };
>> 110
>> 111 inline void G4DNAMolecularReaction::SetReactionModel(G4VDNAReactionModel* model)
>> 112 {
>> 113 fReactionModel = model;
>> 114 }
>> 115
>> 116 inline void G4DNAMolecularReaction::SetVerbose(int verb)
>> 117 {
>> 118 fVerbose = verb;
>> 119 }
>> 120
>> 121 #endif // G4MOLECULARREACTION_H
87 122