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Geant4/processes/electromagnetic/dna/management/src/G4KDTree.cc

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Diff markup

Differences between /processes/electromagnetic/dna/management/src/G4KDTree.cc (Version 11.3.0) and /processes/electromagnetic/dna/management/src/G4KDTree.cc (Version 7.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 /*                                                
 27  * G4KDTree.cc                                    
 28  *                                                
 29  *  Created on: 22 oct. 2013                      
 30  *      Author: kara                              
 31  */                                               
 32                                                   
 33 #include "globals.hh"                             
 34 #include <cstdio>                                 
 35 #include <cmath>                                  
 36 #include "G4KDTree.hh"                            
 37 #include "G4KDMap.hh"                             
 38 #include "G4KDNode.hh"                            
 39 #include "G4KDTreeResult.hh"                      
 40 #include <list>                                   
 41 #include <iostream>                               
 42                                                   
 43 using namespace std;                              
 44                                                   
 45 G4Allocator<G4KDTree>*& G4KDTree::fgAllocator(    
 46 {                                                 
 47   G4ThreadLocalStatic G4Allocator<G4KDTree>* _    
 48   return _instance;                               
 49 }                                                 
 50                                                   
 51 //____________________________________________    
 52 // KDTree methods                                 
 53 G4KDTree::G4KDTree(size_t k)                      
 54   : fDim(k)                                       
 55   ,fKDMap(new G4KDMap(k))                         
 56 {}                                                
 57                                                   
 58 G4KDTree::~G4KDTree()                             
 59 {                                                 
 60   if(fRoot != nullptr){                           
 61     __Clear_Rec(fRoot);                           
 62     fRoot = nullptr;                              
 63   }                                               
 64                                                   
 65   if(fRect != nullptr){                           
 66     delete fRect;                                 
 67     fRect = nullptr;                              
 68   }                                               
 69                                                   
 70   if(fKDMap != nullptr){                          
 71     delete fKDMap;                                
 72     fKDMap = nullptr;                             
 73   }                                               
 74 }                                                 
 75                                                   
 76 void* G4KDTree::operator new(size_t)              
 77 {                                                 
 78   if(fgAllocator() == nullptr){                   
 79     fgAllocator() = new G4Allocator<G4KDTree>;    
 80   }                                               
 81   return (void*) fgAllocator()->MallocSingle()    
 82 }                                                 
 83                                                   
 84 void G4KDTree::operator delete(void* aNode)       
 85 {                                                 
 86   fgAllocator()->FreeSingle((G4KDTree*) aNode)    
 87 }                                                 
 88                                                   
 89 void G4KDTree::Print(std::ostream& out) const     
 90 {                                                 
 91   if(fRoot != nullptr){                           
 92     fRoot->Print(out);                            
 93   }                                               
 94 }                                                 
 95                                                   
 96 void G4KDTree::Clear()                            
 97 {                                                 
 98   __Clear_Rec(fRoot);                             
 99   fRoot    = nullptr;                             
100   fNbNodes = 0;                                   
101                                                   
102   if(fRect != nullptr)                            
103   {                                               
104     delete fRect;                                 
105     fRect = nullptr;                              
106   }                                               
107 }                                                 
108                                                   
109 void G4KDTree::__Clear_Rec(G4KDNode_Base* node    
110 {                                                 
111   if(node == nullptr)                             
112   {                                               
113     return;                                       
114   }                                               
115                                                   
116   if(node->GetLeft() != nullptr)                  
117   {                                               
118     __Clear_Rec(node->GetLeft());                 
119   }                                               
120   if(node->GetRight() != nullptr)                 
121   {                                               
122     __Clear_Rec(node->GetRight());                
123   }                                               
124                                                   
125   delete node;                                    
126 }                                                 
127                                                   
128 void G4KDTree::__InsertMap(G4KDNode_Base* node    
129                                                   
130 void G4KDTree::Build()                            
131 {                                                 
132   size_t Nnodes = fKDMap->GetSize();              
133                                                   
134   G4cout << "********************" << G4endl;     
135   G4cout << "template<typename PointT> G4KDTre    
136   G4cout << "Map size = " << Nnodes << G4endl;    
137                                                   
138   G4KDNode_Base* root = fKDMap->PopOutMiddle(0    
139                                                   
140   if(root == nullptr)                             
141   {                                               
142     return;                                       
143   }                                               
144                                                   
145   fRoot = root;                                   
146   fNbActiveNodes++;                               
147   fRect = new HyperRect(fDim);                    
148   fRect->SetMinMax(*fRoot, *fRoot);               
149                                                   
150   Nnodes--;                                       
151                                                   
152   G4KDNode_Base* parent = fRoot;                  
153                                                   
154   for(size_t n = 0; n < Nnodes; n += fDim)        
155   {                                               
156     for(size_t dim = 0; dim < fDim; dim++)        
157     {                                             
158       G4KDNode_Base* node = fKDMap->PopOutMidd    
159       if(node != nullptr)                         
160       {                                           
161         parent->Insert(node);                     
162         fNbActiveNodes++;                         
163         fRect->Extend(*node);                     
164         parent = node;                            
165       }                                           
166     }                                             
167   }                                               
168 }                                                 
169                                                   
170 G4KDTreeResultHandle G4KDTree::Nearest(G4KDNod    
171 {                                                 
172   if(fRect == nullptr)                            
173   {                                               
174     return nullptr;                               
175   }                                               
176                                                   
177   std::vector<G4KDNode_Base*> result;             
178   G4double dist_sq = DBL_MAX;                     
179                                                   
180   /* Duplicate the bounding hyperrectangle, we    
181   auto newrect = new HyperRect(*fRect);           
182                                                   
183   /* Search for the nearest neighbour recursiv    
184   G4int nbresult = 0;                             
185                                                   
186   __NearestToNode(node, fRoot, *node, result,     
187                                                   
188   /* Free the copy of the hyperrect */            
189   delete newrect;                                 
190                                                   
191   /* Store the result */                          
192   if(!result.empty())                             
193   {                                               
194     G4KDTreeResultHandle rset(new G4KDTreeResu    
195     G4int j = 0;                                  
196     while(j < nbresult)                           
197     {                                             
198       rset->Insert(dist_sq, result[j]);           
199       j++;                                        
200     }                                             
201     rset->Rewind();                               
202                                                   
203     return rset;                                  
204   }                                               
205                                                   
206   return nullptr;                                 
207 }                                                 
208                                                   
209 G4KDTreeResultHandle G4KDTree::NearestInRange(    
210                                                   
211 {                                                 
212   if(node == nullptr)                             
213   {                                               
214     return nullptr;                               
215   }                                               
216   G4int ret(-1);                                  
217                                                   
218   auto* rset = new G4KDTreeResult(this);          
219                                                   
220   const G4double range_sq = sqr(range);           
221                                                   
222   if((ret = __NearestInRange(fRoot, *node, ran    
223      -1)                                          
224   {                                               
225     delete rset;                                  
226     return nullptr;                               
227   }                                               
228   rset->Sort();                                   
229   rset->Rewind();                                 
230   return rset;                                    
231 }                                                 
232