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Geant4/processes/electromagnetic/dna/management/src/G4KDTree.cc

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Differences between /processes/electromagnetic/dna/management/src/G4KDTree.cc (Version 11.3.0) and /processes/electromagnetic/dna/management/src/G4KDTree.cc (Version 11.2.1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
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  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
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 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
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 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
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 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 /*                                                 26 /*
 27  * G4KDTree.cc                                     27  * G4KDTree.cc
 28  *                                                 28  *
 29  *  Created on: 22 oct. 2013                       29  *  Created on: 22 oct. 2013
 30  *      Author: kara                               30  *      Author: kara
 31  */                                                31  */
 32                                                    32 
 33 #include "globals.hh"                              33 #include "globals.hh"
 34 #include <cstdio>                                  34 #include <cstdio>
 35 #include <cmath>                                   35 #include <cmath>
 36 #include "G4KDTree.hh"                             36 #include "G4KDTree.hh"
 37 #include "G4KDMap.hh"                              37 #include "G4KDMap.hh"
 38 #include "G4KDNode.hh"                             38 #include "G4KDNode.hh"
 39 #include "G4KDTreeResult.hh"                       39 #include "G4KDTreeResult.hh"
 40 #include <list>                                    40 #include <list>
 41 #include <iostream>                                41 #include <iostream>
 42                                                    42 
 43 using namespace std;                               43 using namespace std;
 44                                                    44 
 45 G4Allocator<G4KDTree>*& G4KDTree::fgAllocator(     45 G4Allocator<G4KDTree>*& G4KDTree::fgAllocator()
 46 {                                                  46 {
 47   G4ThreadLocalStatic G4Allocator<G4KDTree>* _     47   G4ThreadLocalStatic G4Allocator<G4KDTree>* _instance = nullptr;
 48   return _instance;                                48   return _instance;
 49 }                                                  49 }
 50                                                    50 
 51 //____________________________________________     51 //______________________________________________________________________
 52 // KDTree methods                                  52 // KDTree methods
 53 G4KDTree::G4KDTree(size_t k)                       53 G4KDTree::G4KDTree(size_t k)
 54   : fDim(k)                                        54   : fDim(k)
 55   ,fKDMap(new G4KDMap(k))                          55   ,fKDMap(new G4KDMap(k))
 56 {}                                                 56 {}
 57                                                    57 
 58 G4KDTree::~G4KDTree()                              58 G4KDTree::~G4KDTree()
 59 {                                                  59 {
 60   if(fRoot != nullptr){                            60   if(fRoot != nullptr){
 61     __Clear_Rec(fRoot);                            61     __Clear_Rec(fRoot);
 62     fRoot = nullptr;                               62     fRoot = nullptr;
 63   }                                                63   }
 64                                                    64 
 65   if(fRect != nullptr){                            65   if(fRect != nullptr){
 66     delete fRect;                                  66     delete fRect;
 67     fRect = nullptr;                               67     fRect = nullptr;
 68   }                                                68   }
 69                                                    69 
 70   if(fKDMap != nullptr){                           70   if(fKDMap != nullptr){
 71     delete fKDMap;                                 71     delete fKDMap;
 72     fKDMap = nullptr;                              72     fKDMap = nullptr;
 73   }                                                73   }
 74 }                                                  74 }
 75                                                    75 
 76 void* G4KDTree::operator new(size_t)               76 void* G4KDTree::operator new(size_t)
 77 {                                                  77 {
 78   if(fgAllocator() == nullptr){                    78   if(fgAllocator() == nullptr){
 79     fgAllocator() = new G4Allocator<G4KDTree>;     79     fgAllocator() = new G4Allocator<G4KDTree>;
 80   }                                                80   }
 81   return (void*) fgAllocator()->MallocSingle()     81   return (void*) fgAllocator()->MallocSingle();
 82 }                                                  82 }
 83                                                    83 
 84 void G4KDTree::operator delete(void* aNode)        84 void G4KDTree::operator delete(void* aNode)
 85 {                                                  85 {
 86   fgAllocator()->FreeSingle((G4KDTree*) aNode)     86   fgAllocator()->FreeSingle((G4KDTree*) aNode);
 87 }                                                  87 }
 88                                                    88 
 89 void G4KDTree::Print(std::ostream& out) const      89 void G4KDTree::Print(std::ostream& out) const
 90 {                                                  90 {
 91   if(fRoot != nullptr){                            91   if(fRoot != nullptr){
 92     fRoot->Print(out);                             92     fRoot->Print(out);
 93   }                                                93   }
 94 }                                                  94 }
 95                                                    95 
 96 void G4KDTree::Clear()                             96 void G4KDTree::Clear()
 97 {                                                  97 {
 98   __Clear_Rec(fRoot);                              98   __Clear_Rec(fRoot);
 99   fRoot    = nullptr;                              99   fRoot    = nullptr;
100   fNbNodes = 0;                                   100   fNbNodes = 0;
101                                                   101 
102   if(fRect != nullptr)                            102   if(fRect != nullptr)
103   {                                               103   {
104     delete fRect;                                 104     delete fRect;
105     fRect = nullptr;                              105     fRect = nullptr;
106   }                                               106   }
107 }                                                 107 }
108                                                   108 
109 void G4KDTree::__Clear_Rec(G4KDNode_Base* node    109 void G4KDTree::__Clear_Rec(G4KDNode_Base* node)
110 {                                                 110 {
111   if(node == nullptr)                             111   if(node == nullptr)
112   {                                               112   {
113     return;                                       113     return;
114   }                                               114   }
115                                                   115 
116   if(node->GetLeft() != nullptr)                  116   if(node->GetLeft() != nullptr)
117   {                                               117   {
118     __Clear_Rec(node->GetLeft());                 118     __Clear_Rec(node->GetLeft());
119   }                                               119   }
120   if(node->GetRight() != nullptr)                 120   if(node->GetRight() != nullptr)
121   {                                               121   {
122     __Clear_Rec(node->GetRight());                122     __Clear_Rec(node->GetRight());
123   }                                               123   }
124                                                   124 
125   delete node;                                    125   delete node;
126 }                                                 126 }
127                                                   127 
128 void G4KDTree::__InsertMap(G4KDNode_Base* node    128 void G4KDTree::__InsertMap(G4KDNode_Base* node) { fKDMap->Insert(node); }
129                                                   129 
130 void G4KDTree::Build()                            130 void G4KDTree::Build()
131 {                                                 131 {
132   size_t Nnodes = fKDMap->GetSize();              132   size_t Nnodes = fKDMap->GetSize();
133                                                   133 
134   G4cout << "********************" << G4endl;     134   G4cout << "********************" << G4endl;
135   G4cout << "template<typename PointT> G4KDTre    135   G4cout << "template<typename PointT> G4KDTree<PointT>::Build" << G4endl;
136   G4cout << "Map size = " << Nnodes << G4endl;    136   G4cout << "Map size = " << Nnodes << G4endl;
137                                                   137 
138   G4KDNode_Base* root = fKDMap->PopOutMiddle(0    138   G4KDNode_Base* root = fKDMap->PopOutMiddle(0);
139                                                   139 
140   if(root == nullptr)                             140   if(root == nullptr)
141   {                                               141   {
142     return;                                       142     return;
143   }                                               143   }
144                                                   144 
145   fRoot = root;                                   145   fRoot = root;
146   fNbActiveNodes++;                               146   fNbActiveNodes++;
147   fRect = new HyperRect(fDim);                    147   fRect = new HyperRect(fDim);
148   fRect->SetMinMax(*fRoot, *fRoot);               148   fRect->SetMinMax(*fRoot, *fRoot);
149                                                   149 
150   Nnodes--;                                       150   Nnodes--;
151                                                   151 
152   G4KDNode_Base* parent = fRoot;                  152   G4KDNode_Base* parent = fRoot;
153                                                   153 
154   for(size_t n = 0; n < Nnodes; n += fDim)        154   for(size_t n = 0; n < Nnodes; n += fDim)
155   {                                               155   {
156     for(size_t dim = 0; dim < fDim; dim++)        156     for(size_t dim = 0; dim < fDim; dim++)
157     {                                             157     {
158       G4KDNode_Base* node = fKDMap->PopOutMidd    158       G4KDNode_Base* node = fKDMap->PopOutMiddle(dim);
159       if(node != nullptr)                         159       if(node != nullptr)
160       {                                           160       {
161         parent->Insert(node);                     161         parent->Insert(node);
162         fNbActiveNodes++;                         162         fNbActiveNodes++;
163         fRect->Extend(*node);                     163         fRect->Extend(*node);
164         parent = node;                            164         parent = node;
165       }                                           165       }
166     }                                             166     }
167   }                                               167   }
168 }                                                 168 }
169                                                   169 
170 G4KDTreeResultHandle G4KDTree::Nearest(G4KDNod    170 G4KDTreeResultHandle G4KDTree::Nearest(G4KDNode_Base* node)
171 {                                                 171 {
172   if(fRect == nullptr)                            172   if(fRect == nullptr)
173   {                                               173   {
174     return nullptr;                               174     return nullptr;
175   }                                               175   }
176                                                   176 
177   std::vector<G4KDNode_Base*> result;             177   std::vector<G4KDNode_Base*> result;
178   G4double dist_sq = DBL_MAX;                     178   G4double dist_sq = DBL_MAX;
179                                                   179 
180   /* Duplicate the bounding hyperrectangle, we    180   /* Duplicate the bounding hyperrectangle, we will work on the copy */
181   auto newrect = new HyperRect(*fRect);           181   auto newrect = new HyperRect(*fRect);
182                                                   182 
183   /* Search for the nearest neighbour recursiv    183   /* Search for the nearest neighbour recursively */
184   G4int nbresult = 0;                             184   G4int nbresult = 0;
185                                                   185 
186   __NearestToNode(node, fRoot, *node, result,     186   __NearestToNode(node, fRoot, *node, result, &dist_sq, newrect, nbresult);
187                                                   187 
188   /* Free the copy of the hyperrect */            188   /* Free the copy of the hyperrect */
189   delete newrect;                                 189   delete newrect;
190                                                   190 
191   /* Store the result */                          191   /* Store the result */
192   if(!result.empty())                             192   if(!result.empty())
193   {                                               193   {
194     G4KDTreeResultHandle rset(new G4KDTreeResu    194     G4KDTreeResultHandle rset(new G4KDTreeResult(this));
195     G4int j = 0;                                  195     G4int j = 0;
196     while(j < nbresult)                           196     while(j < nbresult)
197     {                                             197     {
198       rset->Insert(dist_sq, result[j]);           198       rset->Insert(dist_sq, result[j]);
199       j++;                                        199       j++;
200     }                                             200     }
201     rset->Rewind();                               201     rset->Rewind();
202                                                   202 
203     return rset;                                  203     return rset;
204   }                                               204   }
205                                                   205   
206   return nullptr;                                 206   return nullptr;
207 }                                                 207 }
208                                                   208 
209 G4KDTreeResultHandle G4KDTree::NearestInRange(    209 G4KDTreeResultHandle G4KDTree::NearestInRange(G4KDNode_Base* node,
210                                                   210                                               const G4double& range)
211 {                                                 211 {
212   if(node == nullptr)                             212   if(node == nullptr)
213   {                                               213   {
214     return nullptr;                               214     return nullptr;
215   }                                               215   }
216   G4int ret(-1);                                  216   G4int ret(-1);
217                                                   217 
218   auto* rset = new G4KDTreeResult(this);          218   auto* rset = new G4KDTreeResult(this);
219                                                   219 
220   const G4double range_sq = sqr(range);           220   const G4double range_sq = sqr(range);
221                                                   221 
222   if((ret = __NearestInRange(fRoot, *node, ran    222   if((ret = __NearestInRange(fRoot, *node, range_sq, range, *rset, 0, node)) ==
223      -1)                                          223      -1)
224   {                                               224   {
225     delete rset;                                  225     delete rset;
226     return nullptr;                               226     return nullptr;
227   }                                               227   }
228   rset->Sort();                                   228   rset->Sort();
229   rset->Rewind();                                 229   rset->Rewind();
230   return rset;                                    230   return rset;
231 }                                                 231 }
232                                                   232