| Geant4 Cross Reference |
1 # Category emdna History 1 # Category emdna History
2 2
3 See `CONTRIBUTING.rst` for details of **requir 3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological 4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for wr 5 It must **not** be used as a substitute for writing good git commit messages!
6 6
7 ---------------------------------------------- 7 -------------------------------------------------------------------------------
8 8
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 ## 2024-05-11 Gabriele Cosmo (emdna-V11-01-26)
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with 10 - Fixed compilation error on macOS/clang with C++23 enabled, for the use
35 of std::function in G4OctreeFinder. 11 of std::function in G4OctreeFinder.
36 12
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) << 13 ## 2024-04-19 Gabriele Cosmo
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with 14 - Fixed compilation error on Windows VC++ with C++20 Standard enabled.
51 Added missing declarations for TG4MoleculeSh 15 Added missing declarations for TG4MoleculeShoot specialisations on G4Track.
52 Based on [GitHub PR#69](https://github.com/G 16 Based on [GitHub PR#69](https://github.com/Geant4/geant4/pull/69).
53 17
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) 18 ## 2023-11-14 Ben Morgan (emdna-V11-01-25)
106 - Use G4FindDataDir to access data libraries i 19 - Use G4FindDataDir to access data libraries in place of raw `getenv`.
107 20
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) 21 ## 2023-11-11 Hoang Tran (emdna-V11-01-24)
109 - correct fastercode section for dna opt6 22 - correct fastercode section for dna opt6
110 23
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) 24 ## 2023-10-12 Hoang Tran (emdna-V11-01-23)
112 - correct scavenger counter for oxygen 25 - correct scavenger counter for oxygen
113 26
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) 27 ## 2023-10-11 Hoang Tran (emdna-V11-01-22)
115 - Fixed the K shell bug in G4DNARuddIonisation 28 - Fixed the K shell bug in G4DNARuddIonisationExtendedModel.cc
116 29
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) 30 ## 2023-10-10 Hoang Tran (emdna-V11-01-21)
118 - improved equilibrium processes, introduced G 31 - improved equilibrium processes, introduced G4ChemEquilibrium
119 32
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) 33 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20)
121 - In navigation classes, removed references to 34 - In navigation classes, removed references to G4TouchableHistoryHandle,
122 which is now deprecated. 35 which is now deprecated.
123 36
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) 37 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19)
125 - Removed references to unused G4GRSSolid and 38 - Removed references to unused G4GRSSolid and G4GRSVolume in navigator classes.
126 39
127 ## 2023-08-29 (emdna-V11-01-18) 40 ## 2023-08-29 (emdna-V11-01-18)
128 - Fix minor/obvious Coverity issues 41 - Fix minor/obvious Coverity issues
129 42
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) 43 ## 2023-07-21 Ben Morgan (emdna-V11-01-17)
131 - Apply core clang-tidy fixes plus those for 44 - Apply core clang-tidy fixes plus those for
132 - Cons/destructor modernization 45 - Cons/destructor modernization
133 - Readability and logic for conditionals/boo 46 - Readability and logic for conditionals/booleans
134 47
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) 48 ## 2023-07-12 Ben Morgan (emdna-V11-01-16)
136 - Apply patch from [GitHub PR 58](https://gith 49 - Apply patch from [GitHub PR 58](https://github.com/Geant4/geant4/pull/58)
137 - Use std::erfc to avoid precision loss 50 - Use std::erfc to avoid precision loss
138 - Remove unused header 51 - Remove unused header
139 52
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) 53 ## 2023-06-10 Hoang Tran (emdna-V11-01-15)
141 - minor correction for DNA material in option6 54 - minor correction for DNA material in option6
142 55
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) 56 ## 2023-06-09 Hoang Tran (emdna-V11-01-14)
144 - use analytical method for DNA material in op 57 - use analytical method for DNA material in option6, water is unchanged
145 58
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 59 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-01-13)
147 - G4DNARuddIonisationExtendedModel - model re- 60 - G4DNARuddIonisationExtendedModel - model re-written: shared date between
148 threads, applicable for scaled energy interv 61 threads, applicable for scaled energy interval 100 eV to 100 MeV, if for
149 an ion data is not available proton x-sectio 62 an ion data is not available proton x-section and effective charge are
150 used, sampling of delta-electron is done usi 63 used, sampling of delta-electron is done using two regions regression method
151 64
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) 65 ## 2023-05-25 Hoang Tran (emdna-V11-01-12)
153 - Modified DNA cross section file name to new 66 - Modified DNA cross section file name to new G4EMLOW8.4
154 67
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) 68 ## 2023-05-19 Hoang Tran (emdna-V11-01-11)
156 - Add DNA cross section to dna_option6 69 - Add DNA cross section to dna_option6
157 70
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) 71 ## 2023-05-17 Hoang Tran (emdna-V11-01-10)
159 - Fix Compilation warnings on XCode 72 - Fix Compilation warnings on XCode
160 73
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) 74 ## 2023-05-04 Hoang Tran (emdna-V11-01-09)
162 - correct the initial values of G4DNAEventSche 75 - correct the initial values of G4DNAEventScheduler
163 76
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) 77 ## 2023-04-28 Hoang Tran (emdna-V11-01-08)
165 - add time structure (pulsed beam) to water ra 78 - add time structure (pulsed beam) to water radiolysis (G4VUserPulseInfo)
166 79
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) 80 ## 2023-04-26 Hoang Tran (emdna-V11-01-07)
168 - correct KDTree bug 81 - correct KDTree bug
169 82
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) 83 ## 2023-03-24 Hoang Tran (emdna-V11-01-06)
171 - icsd physicslist: deleted unused model, 84 - icsd physicslist: deleted unused model,
172 - Apdated RegisterModel function with new stru 85 - Apdated RegisterModel function with new structure
173 - added model data to G4DNAMaterialManager sin 86 - added model data to G4DNAMaterialManager singleton
174 87
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) 88 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05)
176 - Fixed compilation warning on macOS/XCode for 89 - Fixed compilation warning on macOS/XCode for implicit type conversion
177 in G4DNAVacuumModel::Initialise(). 90 in G4DNAVacuumModel::Initialise().
178 91
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) 92 ## 2023-02-09 Hoang Tran (emdna-V11-01-04)
180 - Introduced G4DNAMaterialManager to manage av 93 - Introduced G4DNAMaterialManager to manage available DNA material
181 and keeps DNA cross section data in one thread 94 and keeps DNA cross section data in one thread.
182 - minor change in G4VDNAModel 95 - minor change in G4VDNAModel
183 96
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) 97 ## 2023-01-27 Hoang Tran (emdna-V11-01-03)
185 - reorganize multiple material model of PTB mo 98 - reorganize multiple material model of PTB model.
186 G4VDNAModel plays like a data layer for multip 99 G4VDNAModel plays like a data layer for multiple material model.
187 The concrete models are independent of G4DNAMo 100 The concrete models are independent of G4DNAModelInterface.
188 101
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) 102 ## 2023-01-17 Hoang Tran (emdna-V11-01-02)
190 - replaced string to material index and clean 103 - replaced string to material index and clean the files(G4DNAPTBExcitationModel,
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, 104 G4DNAPTBIonisationModel, G4DNAPTBElasticModel,G4DNAPTBIonisationStructure,
192 G4DNAPTBExcitationStructure) - PTB models 105 G4DNAPTBExcitationStructure) - PTB models
193 - added material pointer members for each conc 106 - added material pointer members for each concrete models(PTB models)
194 - removed unused objects (G4DataVector()) 107 - removed unused objects (G4DataVector())
195 108
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) 109 ## 2023-01-06 Hoang Tran (emdna-V11-01-01)
197 - clean G4DNAModelInterface file for the model 110 - clean G4DNAModelInterface file for the model combination of different materials
198 111
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) 112 ## 2022-12-12 Hoang Tran (emdna-V11-01-00)
200 - fix coverity of G4DNARuddIonisationExtendedM 113 - fix coverity of G4DNARuddIonisationExtendedModel, G4DNADingfelderChargeIncreaseModel
201 (Uninitialized scalar variable) from cand1 ana 114 (Uninitialized scalar variable) from cand1 analysis
202 115
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 116 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-00-39)
204 - G4DNARuddIonisationExtendedModel - fixed com 117 - G4DNARuddIonisationExtendedModel - fixed common work between DNA physics and
205 radioactive decay module - before this upd << 118 radioactive decay module - before this update test2.in macro crash, because
206 only 5 ions have data needed for this mode 119 only 5 ions have data needed for this model; with this modification of the
207 model scaling relation to the carbon ion i 120 model scaling relation to the carbon ion is used for any ion, which has
208 no data; low-energy limit is used now more << 121 no data; low-energy limit is used now more correctly - all ions are stopped
209 but not killed, because they may have radi 122 but not killed, because they may have radioactive decay at rest; all commented
210 lines are removed from the class 123 lines are removed from the class
211 124
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) 125 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38)
213 - Fixed more compilation warnings for implicit 126 - Fixed more compilation warnings for implicit type conversions.
214 127
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) 128 ## 2022-11-22 Hoang Tran (emdna-V11-00-37)
216 - delete unused tests in dna (G4DNAProcessTest 129 - delete unused tests in dna (G4DNAProcessTest.cc and G4DNATest.cc)
217 130
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) 131 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36)
219 - Fixed compilation warnings for implicit type 132 - Fixed compilation warnings for implicit type conversions on macOS/XCode 14.1.
220 133
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 134 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-00-35)
222 - G4DNAUeharaScreenedRutherfordElasticModel - << 135 - G4DNAUeharaScreenedRutherfordElasticModel - code cleanup; introduced
223 low and high energy limit for the model; r 136 low and high energy limit for the model; removed missleading G4Exception
224 137
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) 138 ## 2022-11-01 Hoang Tran (emdna-V11-00-34)
226 - Fix Coverity issues for ref-09 139 - Fix Coverity issues for ref-09
227 140
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) 141 ## 2022-10-10 Hoang Tran (emdna-V11-00-33)
229 - minor correction of IRT-syn model (chemistry 142 - minor correction of IRT-syn model (chemistry). Contact reactions should not happen
230 after 1 ps. 143 after 1 ps.
231 144
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- 145 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna-V11-00-32)
233 - Add nitrogen models from PTra code 146 - Add nitrogen models from PTra code
234 147
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) 148 ## 2022-10-10 Hoang Tran (emdna-V11-00-31)
236 - Fixed minor mistake of file name in G4DNARPW 149 - Fixed minor mistake of file name in G4DNARPWBAIonisationModel,
237 - Added protection for HighEnergyLimit/LowEner 150 - Added protection for HighEnergyLimit/LowEnergyLimit in G4DNARPWBAIonisationModel and
238 G4DNARPWBAExcitationModel 151 G4DNARPWBAExcitationModel
239 152
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) 153 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30)
241 - Fixed compilation warnings on Intel/icx comp 154 - Fixed compilation warnings on Intel/icx compiler for variables set
242 but not used in G4ITNavigator2. 155 but not used in G4ITNavigator2.
243 156
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) 157 ## 2022-10-05 Hoang Tran (emdna-V11-00-29)
245 - Fix user's report for IRT model. 158 - Fix user's report for IRT model.
246 If the first IRTSampling won't give any rea 159 If the first IRTSampling won't give any reactions, end the simu. No StepProcessor in this simu
247 160
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) 161 ## 2022-10-03 Hoang Tran (emdna-V11-00-28)
249 - Fix Coverity static analysis for ref-08 162 - Fix Coverity static analysis for ref-08
250 uninit_member in G4DNAMillerGreenExcitationMo 163 uninit_member in G4DNAMillerGreenExcitationModel, G4DNARuddIonisationModel, G4DNADingfelderChargeDecreaseModel,
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI 164 G4DNADingfelderChargeIncreaseModel,G4DNARuddIonisationExtendedModel, G4DNAGillespieDirectMethod
252 Use auto & instead of auto : G4ITFinder, G4DN 165 Use auto & instead of auto : G4ITFinder, G4DNAScavengerMaterial, G4MoleculeCounter, G4OCTREE
253 166
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) 167 ## 2022-09-08 Hoang Tran (emdna-V11-00-27)
255 - Resolve dependency inconsistencies : 168 - Resolve dependency inconsistencies :
256 dna/management/include/G4ChemicalMoleculeF 169 dna/management/include/G4ChemicalMoleculeFinder.hh includes G4Molecule.hh from G4emdna-molman
257 dna/management/include/G4UserMeshAction.hh 170 dna/management/include/G4UserMeshAction.hh includes G4DNAMesh.hh from G4emdna-utils
258 dna/management/include/G4OctreeFinder.hh i 171 dna/management/include/G4OctreeFinder.hh includes G4IRTUtils.hh from G4emdna-utils
259 172
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) 173 ## 2022-09-05 Ben Morgan (emdna-V11-00-26)
261 - Partially resolve dependency inconsistencies 174 - Partially resolve dependency inconsistencies
262 - NB: cannot be resolved fully without intro 175 - NB: cannot be resolved fully without introducing a cycle between
263 G4emdna-man, G4emdna-molman, G4emdna-utils 176 G4emdna-man, G4emdna-molman, G4emdna-utils.
264 177
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) 178 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25)
266 - Define G4CT_MAX_COUNT for changing "compile 179 - Define G4CT_MAX_COUNT for changing "compile time counter" depth to fix build
267 errors on NVHPC compiler. 180 errors on NVHPC compiler.
268 181
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 182 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-00-24)
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo << 183 - G4DNAExcitation, G4DNAVibExcitation, G4DNARotExcitation - class
271 cleanup according to the recent G4VEmProce 184 cleanup according to the recent G4VEmProcess base class; model
272 headers are moved to source; C++11 keyward << 185 headers are moved to source; C++11 keywards are introduced.
273 186
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) 187 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23)
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela 188 - G4DNABornIonisationModel1.cc, G4DNACPA100ElasticModel.cc,
276 G4DNACPA100IonisationModel.cc, G4DNAChampion 189 G4DNACPA100IonisationModel.cc, G4DNAChampionElasticModel.cc,
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo 190 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglouIonisationModel.cc,
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx 191 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonExcitationModel.cc,
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis 192 G4DNARPWBAIonisationModel.cc, G4DNARelativisticIonisationModel.cc,
280 G4DNASancheExcitationModel.cc : 193 G4DNASancheExcitationModel.cc :
281 use G4FindDataDir("G4LEDATA") to find datase 194 use G4FindDataDir("G4LEDATA") to find dataset path on place of getenv.
282 195
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) 196 ## 2022-06-03 Hoang Tran (emdna-V11-00-22)
284 - correct DNA ion definitions in G4DNARuddIoni 197 - correct DNA ion definitions in G4DNARuddIonisationExtendedModel.
285 198
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) 199 ## 2022-06-01 Hoang Tran (emdna-V11-00-21)
287 - G4Octree : fixed Coverity warning. 200 - G4Octree : fixed Coverity warning.
288 201
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) 202 ## 2022-05-24 Hoang Tran (emdna-V11-00-20)
290 - update data structure to improve performance 203 - update data structure to improve performance of the mesoscopic model.
291 204
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) 205 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19)
293 - G4ITTransportation: fixed misuse of bitwise 206 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294 207
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) 208 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18)
296 - Added missing headers. 209 - Added missing headers.
297 210
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) 211 ## 2022-05-11 Hoang Tran (emdna-V11-00-17)
299 - change the scavenging filter of the IRT beyo 212 - change the scavenging filter of the IRT beyond 1 us proposed by Naoki and Jose
300 213
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) 214 ## 2022-05-02 Hoang Tran (emdna-V11-00-16)
302 - Add localthread for fUse of G4VMoleculeCount 215 - Add localthread for fUse of G4VMoleculeCounter
303 216
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa 217 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoang Tran (emdna-V11-00-15)
305 - Incorporation of model based on RPWBA to tra 218 - Incorporation of model based on RPWBA to transport protons at 100-300 MeV.
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI 219 - Added G4DNARPWBAExcitationModel, G4DNARPWBAIonisationModel.
307 220
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) 221 ## 2022-04-25 Hoang Tran (emdna-V11-00-14)
309 - add UserBrownianAction in G4DNABrownianTrans 222 - add UserBrownianAction in G4DNABrownianTransportation and
310 G4DNAMolecularDissociation 223 G4DNAMolecularDissociation
311 - replace G4int by int64_t for width integer t 224 - replace G4int by int64_t for width integer types
312 - add fResetScavenger in G4SchedulerMessenger 225 - add fResetScavenger in G4SchedulerMessenger
313 226
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) 227 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13)
315 - save local instances for recurrent access to << 228 - save local instances for recurrent access to particle definition in
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo 229 G4DNAMillerGreenExcitationModel, G4DNARuddIonisationExtendedModel and
317 G4DNARuddIonisationModel 230 G4DNARuddIonisationModel
318 - use G4Pow and G4Log instead of std::pow and 231 - use G4Pow and G4Log instead of std::pow and std::log
319 - inside G4DNARuddIonisationExtendedModel comm 232 - inside G4DNARuddIonisationExtendedModel commented out ions that are not
320 inside G4DNAGenericIonsManager 233 inside G4DNAGenericIonsManager
321 234
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) 235 ## 2022-04-14 Hoang Tran (emdna-V11-00-12)
323 - Debug the report #2235 which might be relate 236 - Debug the report #2235 which might be related to KDtree algorithm
324 - Clean code 237 - Clean code
325 - Delete G4ITFinder.cc 238 - Delete G4ITFinder.cc
326 239
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) 240 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11)
328 - save local instances for recurrent access to << 241 - save local instances for recurrent access to particle definition in
329 G4DNADingfelderChargeDecreaseModel and G4DNADi 242 G4DNADingfelderChargeDecreaseModel and G4DNADingfelderChargeIncreaseModel
330 - use G4Pow and G4Log instead of std::pow and 243 - use G4Pow and G4Log instead of std::pow and std::log
331 244
332 ## 2022-03-18 SI (emdna-V11-00-10) 245 ## 2022-03-18 SI (emdna-V11-00-10)
333 - add protection in G4DNACPA100IonisationModel 246 - add protection in G4DNACPA100IonisationModel for cum. xs interpolation
334 247
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) 248 ## 2022-03-15 Hoang Tran (emdna-V11-00-09)
336 - remove macro commands to control the chemist 249 - remove macro commands to control the chemistry models in G4SchedulerMessenger
337 (creating models in G4SchedulerMessenger can m 250 (creating models in G4SchedulerMessenger can make circular dependency problems)
338 - add flag OctreeFinder in IRT_syn's Initializ 251 - add flag OctreeFinder in IRT_syn's Initialize()
339 252
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) 253 ## 2022-03-04 Hoang Tran (emdna-V11-00-08)
341 - add macro commands to control the chemistry 254 - add macro commands to control the chemistry models,
342 parameters including the chemical molecules an 255 parameters including the chemical molecules and reaction list involved in the radiolysis
343 256
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) 257 ## 2022-02-18 Hoang Tran (emdna-V11-00-07)
345 - optimize IRT-syn model, use reaction radius 258 - optimize IRT-syn model, use reaction radius and reaction type from the reaction table
346 - delete G4VReactionType, G4DNAReactionTypeMan 259 - delete G4VReactionType, G4DNAReactionTypeManager, G4DNATotallyDiffusionControlled,
347 G4DNAPartiallyDiffusionControlled 260 G4DNAPartiallyDiffusionControlled
348 - delete G4DNAIRT_geomtries 261 - delete G4DNAIRT_geomtries
349 262
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) 263 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06)
351 - `G4ITTransportation`: Make `PrepareState` mo 264 - `G4ITTransportation`: Make `PrepareState` more function-like, expect semicolon
352 - `G4DNAPolyNucleotideReactionProcess`: 265 - `G4DNAPolyNucleotideReactionProcess`:
353 - Move `PrepareState` and `State` macros int 266 - Move `PrepareState` and `State` macros into `.cc` file
354 - Make `PrepareState` more function-like, ex 267 - Make `PrepareState` more function-like, expect semicolon
355 - Move variable `pMoleculeA` under `G4VERBOS 268 - Move variable `pMoleculeA` under `G4VERBOSE`
356 269
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) 270 ## 2022-02-10 Hoang Tran (emdna-V11-00-05)
358 - add the condition of water material for the 271 - add the condition of water material for the OUTSIDE_OF_MOTHER_VOLUME
359 warning in G4DNAMolecularDissociation::DecayIt 272 warning in G4DNAMolecularDissociation::DecayIt()
360 273
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) 274 ## 2022-02-3 Hoang Tran (emdna-V11-00-04)
362 - modify the macro in G4Molecule.cc and G4ITTy 275 - modify the macro in G4Molecule.cc and G4ITType.hh for linker problems on Windows
363 276
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) 277 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03)
365 - Prefer pointer to `const G4Material` if poss 278 - Prefer pointer to `const G4Material` if possible
366 279
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) 280 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02)
368 - Remove useless `const_cast` of `G4VSensitive 281 - Remove useless `const_cast` of `G4VSensitiveDetector`
369 282
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) 283 ## 2021-12-23 Hoang Tran (emdna-V11-00-01)
371 - add G4DNAPolyNucleotideReactionProcess, G4VD 284 - add G4DNAPolyNucleotideReactionProcess, G4VDNAHitModel
372 files for DNA damage applications 285 files for DNA damage applications
373 286
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) 287 ## 2021-12-10 Ben Morgan (emdna-V11-00-00)
375 - Change to new Markdown History format 288 - Change to new Markdown History format
376 289
377 --- 290 ---
378 291
379 # History entries prior to 11.0 292 # History entries prior to 11.0
380 293
381 8-11-2021, H. Tran, emdna-V10-07-15 294 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 295 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 296 - corrected the problem in IRT
384 297
385 4-11-2021, H. Tran, emdna-V10-07-14 298 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 299 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 300 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 301 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 302 Added new mesoscopic model for dna chemistry
390 303
391 21-10-2021, W.G.Shin, emdna-V10-07-13 304 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 305 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 306 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 307 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 308 G4DNAMolecularReactionTable
396 309
397 23-09-2021, A. Ribon, emdna-V10-07-12 310 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 311 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 312 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 313 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 314 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 315 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 316 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 317
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 318 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 319 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 320 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 321
409 16-07-2021, D. Sakata, emdna-V10-07-10 322 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 323 - Fixed initialization error in G4DNAELSEPAElasticModel
411 324
412 28-06-2021, G. Cosmo, emdna-V10-07-09 325 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 326 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 327 enabled.
415 328
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 329 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 330 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 331 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 332 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 333 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 334 - Modified G4DNAELSEPAElasticModel for gold
422 335
423 9-05-2021, H.Tran, tag emdna-V10-07-07 336 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 337 - Add IRT-syn model
425 338
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 339 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 340 - Migrate build to modular CMake API
428 341
429 27-04-2021, H.Tran, tag emdna-V10-07-05 342 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 343 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 344 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 345 - added OctreeFinder and IRTUtils
433 346
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 347 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 348 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 349
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 350 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 351 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 352
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 353 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 354 - Fixed dependency on g4tools, now moved to externals module.
442 355
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 356 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 357 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 358 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 359 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 360 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 361 Added the fragment displacement for new dissociation channel
449 362
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 363 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 364 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 365 help resolving observed crashes in MT runs.
453 Some code cleanup. 366 Some code cleanup.
454 367
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 368 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 369 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 370 - History file fixed
458 371
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 372 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 373 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 374 in chem6 example - do not delete instance of the singleton
462 375
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 376 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 377 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 378 required after analysis update (analysis-V10-06-05)
466 379
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 380 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 381 - Fixed coverity warning
469 382
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 383 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 384 - Fixed coverity warnings
472 - Fix of IRT bug 385 - Fix of IRT bug
473 (protection for the crash induced by empty re 386 (protection for the crash induced by empty reaction set)
474 387
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 388 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 389 - Add missing G4analysismng module dependency to G4emdna-utils
477 390
478 20-05-20: W.G.Shin emdna-V10-06-05 391 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 392 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 393 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 394 - Added missing History
482 395
483 26-04-20: W.G.Shin emdna-V10-06-04 396 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 397 - Fixed coverity test
485 398
486 15-04-20: G.Cosmo emdna-V10-06-03 399 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 400 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 401 are not allowed (as for G4ParticleDefinition). Now deleted.
489 402
490 19-02-20: W.G.Shin emdna-V10-06-02 403 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 404 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 405 - Revised headeres of IRT classes
493 406
494 12-02-20: W.G.Shin emdna-V10-06-01 407 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 408 - Added protections floating point exception in G4DNAIRT class
496 409
497 10-01-20: W.G.Shin emdna-V10-06-00 410 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 411 - Added classes for IRT
499 - Added features in management classes for IRT 412 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 413 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 414 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 415 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 416
504 15-11-19: G.Cosmo emdna-V10-05-11 417 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 418 - Fixed cases of implicit type conversions from size_t to G4int.
506 419
507 8-11-19: HT, tag emdna-V10-05-10 420 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 421 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 422 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 423 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 424
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 425 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 426 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 427 of external physical volume (meant for adapting external navigators)
515 428
516 19-10-19: WGS, SI, tag emdna-V10-05-08 429 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 430 - Added new model G4DNAELSEPAElasticModel
518 431
519 11-10-19: WGS, SI, tag emdna-V10-05-07 432 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 433 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 434 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 435 - G4DNAWaterDissociationDisplacer* : updated
523 436
524 03-06-2019, MK, tag emdna-V10-05-06 437 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 438 - Fix GCC9 warnings
526 439
527 26-03-2019, HT, tag emdna-V10-05-05 440 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 441 - Added G4DNAMolecule
529 442
530 10-03-2019, MK, tag emdna-V10-05-04 443 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 444 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 445 - Chemistry: clarify pointer ownership, clean code
533 446
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 447 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 448 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 449 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 450
538 18-01-2019, HT, tag emdna-V10-05-02 451 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 452 - Transformed the exception into warning in G4DNAMolecularDissociation
540 453
541 28-12-2018, MK, tag emdna-V10-05-01 454 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 455 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 456
544 05-01-2019, HT, tag emdna-V10-05-00 457 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 458 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 459 in G4ITStepProcessor::SetInitialStep()
547 460
548 01-09-2018, SI, tag emdna-V10-04-10 461 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 462 renamed tag
550 463
551 01-09-2018, SI, tag emdna-v10-04-09 464 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 465 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 466 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 467
555 30-07-2018, SI, tag emdna-V10-04-08 468 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 469 - included upper energy limit of models (2)
557 470
558 29-07-2018, SI, tag emdna-V10-04-07 471 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 472 - included upper energy limit of models
560 473
561 01-07-2018, SI, tag emdna-V10-04-06 474 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 475 - added protection in Auger emission
563 476
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 477 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 478 - updated Si mass in G4DNAGenericIonsManager
566 479
567 22-06-2018, SI tag emdna-V10-04-04 480 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 481 - fixed warnings in lepts models
569 482
570 14-05-2018, SI tag emdna-V10-04-03 483 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 484 - chemistry update by Mathieu
572 485
573 01-05-2018, SI tag emdna-V10-04-02 486 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 487 - chemistry update by Mathieu
575 488
576 09-02-2018, M.Asai tag emdna-V10-04-01 489 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 490 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 491 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 492 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 493 - Co-works with run-V10-04-01 and global-V10-04-01.
581 494
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 495 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 496 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 497 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 498 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 499 Thanks to Raphael Isemann for reporting these.
587 500
588 01-11-2017, MK tag emdna-V10-03-30 501 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 502 - remove models/test directory
590 503
591 31-10-2017, JA ( tag missing ) 504 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 505 - G4KDNode.hh: Add missing included file - needed in test
593 506
594 16-08-2017, SI tag emdna-V10-03-28 507 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 508 - updated variable types in models
596 509
597 10-08-2017, SI tag emdna-V10-03-27 510 10-08-2017, SI tag emdna-V10-03-27
598 - test 511 - test
599 512
600 10-08-2017, SI tag emdna-V10-03-26 513 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 514 - same as previous
602 515
603 09-08-2017, SI tag emdna-V10-03-25 516 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 517 - same as previous
605 518
606 09-08-2017, SI tag emdna-V10-03-24 519 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 520 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 521
609 03-08-2017, VI tag emdna-V10-03-23 522 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 523 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 524
612 28-07-2017, SI, tag emdna-V10-03-22 525 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 526 - added stationary mode flag to CPA100 ionisation.
614 527
615 04-07-2017, SI, tag emdna-V10-03-21 528 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 529 - added tagging of atom. deexc. products in ionisation models.
617 530
618 31-05-2017, SM, tag emdna-V10-03-20 531 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 532 - Correct windows issues with path of diff. CS data file.
620 533
621 31-05-2017, SI, tag emdna-V10-03-19 534 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 535 - roll-back (Windows issues with previous tag)
623 536
624 24-05-2017, SI, tag emdna-V10-03-18 537 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 538 - added tagging of atom. deexc. products in ionisation models.
626 539
627 11-05-2017, VI tag emdna-V10-03-17 540 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 541 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 542
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 543 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 544 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 545
633 03-05-2017, SM, tag emdna-V10-03-15 546 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 547 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 548
636 27-04-2017, SM, tag emdna-V10-03-14 549 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 550 - correct small typo mistakes.
638 551
639 27-04-2017, SM, tag emdna-V10-03-13 552 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 553 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 554
642 10-03-2017, MK, tag emdna-V10-03-12 555 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 556 - update utils/GNUmakefile
644 557
645 13-02-2017, MK, tag emdna-V10-03-11 558 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 559 - G4DNAMolecularMaterial: update doxygen doc
647 560
648 13-02-2017, MK, tag emdna-V10-03-10 561 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 562 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 563 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 564 add doxygen documentation
652 565
653 10-02-2017, MK, tag emdna-V10-03-09 566 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 567 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 568 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 569 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 570 when G4ITTrackHolder::PushToKill is called.
658 571
659 09-02-2017, MK, tag emdna-V10-03-08 572 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 573 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 574 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 575 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 576 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 577 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 578
666 24-01-2017, SM, tag emdna-V10-03-07 579 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 580 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 581
669 23-01-2017, SM, tag emdna-V10-03-06 582 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 583 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 584
672 23-01-2017, SM CV, tag emdna-V10-03-05 585 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 586 - add new G4DNAPTB* classes and the structure of the new material management system
674 587
675 14-01-2017, MK, tag emdna-V10-02-37 588 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 589 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 590 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 591 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 592
680 28-12-2016, SI, tag emdna-V10-03-04 593 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 594 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 595 G4DNARuddIonisationExtendedModel
683 596
684 27-12-2016, SI, tag emdna-V10-03-03 597 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 598 - updated references of CPA100 classes
686 599
687 23-12-2016, SI, tag emdna-V10-03-02 600 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 601 - updated sources.cmake
689 602
690 23-12-2016, SI, tag emdna-V10-03-01 603 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 604 - commit of first CPA100 classes, part 2
692 605
693 21-12-2016, SI, tag emdna-V10-03-00 606 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 607 - commit of first CPA100 classes
695 608
696 27-11-2016, MK, tag emdna-V10-02-36 609 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 610 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 611 - G4DNADamages -> G4DNADamage
699 612
700 17-11-2016, MK, tag emdna-V10-02-35 613 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 614 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 615
703 16-11-2016, MK, tag emdna-V10-02-34 616 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 617 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 618 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 619 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 620 G4VTrackStateID::Create() to cc file - windows crash
708 621
709 15-11-2016, MK, tag emdna-V10-02-33 622 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 623 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 624
712 14-11-2016, MK, tag emdna-V10-02-32 625 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 626 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 627 windows platforms
715 628
716 14-11-2016, MK, tag emdna-V10-02-31 629 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 630 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 631 tag init constexpr factor with number rather than expression
719 632
720 14-11-2016, MK, tag emdna-V10-02-30 633 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 634 - Use CLHEP::pi instead of M_PI
722 635
723 14-11-2016, MK, tag emdna-V10-02-29 636 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 637 - Correct bracket enclosing
725 638
726 14-11-2016, MK, tag emdna-V10-02-28 639 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 640 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 641 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 642 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 643 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 644 - Adds and use G4CTCounter
732 645
733 02-11-2016, MK, tag emdna-V10-02-27 646 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 647 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 648 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 649 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 650 computeStep & computeSafety
738 651
739 07-08-2016, SI, tag emdna-V10-02-26 652 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 653 - added stationnary mode to sub-excitation electron processes
741 654
742 23-06-2016, MK 655 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 656 - G4Scheduler: move G4IosFlagsSaver to Process()
744 657
745 3-06-2016, MK, tag emdna-V10-02-25 658 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 659 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 660 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 661 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 662
750 3-06-2016, MK, tag emdna-V10-02-24 663 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 664 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 665 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 666 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 667 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 668 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 669 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 670 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 671 model used for another part than e-
759 672
760 1-06-2016, MK, tag emdna-V10-02-23 673 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 674 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 675 logic for interface with physics models
763 676
764 31-05-2016, MK, tag emdna-V10-02-22 677 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 678 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 679
767 28-05-2016, MK, tag emdna-V10-02-21 680 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 681 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 682 one of the previous tags
770 683
771 19-05-2016, MK, tag emdna-V10-02-20 684 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 685 - G4ITNavigator: remove warnings on gcc6.1
773 686
774 17-05-2016, MK, tag emdna-V10-02-19 687 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 688 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 689 correct model and process names for solvation
777 690
778 12-05-2016, MK, tag emdna-V10-02-18 691 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 692 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 693 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 694 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 695 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 696 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 697 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 698 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 699 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 700 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 701 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 702 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 703 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 704 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 705 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 706 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 707 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 708 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 709 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 710 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 711 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 712 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 713 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 714 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 715 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 716 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 717 created; otherwise, the primary electron is killed
805 718
806 30-04-2016, MK, tag emdna-V10-02-17 719 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 720 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 721
809 30-04-2016, MK, tag emdna-V10-02-16 722 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 723 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 724 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 725 unregistered molecule definition
813 726
814 22-04-2016, MK, tag emdna-V10-02-15 727 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 728 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 729 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 730
818 22-04-2016, MK, tag emdna-V10-02-14 731 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 732 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 733 remove usage of internal energy boundaries
821 734
822 19-03-2016, SI, tag emdna-V10-02-13 735 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 736 - added nrj extensibility to SR and USR models
824 737
825 11-03-2016, SI, tag emdna-V10-02-12 738 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 739 -roll back to files in emdna-V10-02-06
827 740
828 10-03-2016, SI, tag emdna-V10-02-11 741 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 742 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 743 and G4DNAScreenedRutherfordElasticModel
831 744
832 10-03-2016, SI, tag emdna-V10-02-10 745 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 746 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 747
835 07-03-2016, SI, tag emdna-V10-02-09 748 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 749 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 750 of G4DNAUeharaScreenedRutherfordElasticModel
838 751
839 06-03-2016, SI, tag emdna-V10-02-08 752 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 753 -removed useless G4Pow declaration
841 754
842 04-03-2016, SI, tag emdna-V10-02-07 755 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 756 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 757 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 758
846 02-03-2016, SI, tag emdna-V10-02-06 759 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 760 -replaced std::exp by G4Exp
848 761
849 02-03-2016, SI, tag emdna-V10-02-05 762 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 763 -replaced std::exp by G4Exp
851 764
852 02-03-2016, SI, tag emdna-V10-02-04 765 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 766 -replaced std::exp by G4Exp
854 767
855 01-03-2016, SI, tag emdna-V10-02-03 768 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 769 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 770 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 771 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 772 by S. Okada (KEK, JP)
860 773
861 17-02-2016, MK, tag emdna-V10-02-02 774 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 775 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 776
864 16-12-2015, SI, tag emdna-V10-02-01 777 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 778 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 779 added protection on energy for interpolation method change
867 780
868 16-12-2015, SI, tag emdna-V10-02-00 781 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 782 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 783 energy
871 784
872 13-11-2015, MK, tag emdna-V10-01-55 785 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 786 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 787 file
875 788
876 10-11-2015, MK, tag emdna-V10-01-54 789 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 790 * remove unused variables
878 791
879 10-11-2015, MK, tag emdna-V10-01-53 792 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 793 * Coverity fixes
881 794
882 06-11-2015, MK, tag emdna-V10-01-52 795 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 796 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 797
885 06-11-2015, MK, tag emdna-V10-01-51 798 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 799 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 800 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 801
889 06-11-2015, MK, tag emdna-V10-01-50 802 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 803 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 804 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 805 * Add G4ITStepProcessorState_Lock.hh
893 806
894 06-11-2015, MK, tag emdna-V10-01-49 807 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 808 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 809 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 810 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 811 but in the source file - causing crashes on windows
899 812
900 04-11-2015, MK, tag emdna-V10-01-48 813 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 814 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 815 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 816 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 817 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 818 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 819 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 820 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 821 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 822 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 823 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 824 all dissociation products have been defined (they will just not be taken
912 into account) 825 into account)
913 * G4DNAMolecularReactionTable: delete reaction 826 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 827
915 03-11-2015, MK, tag emdna-V10-01-47 828 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 829 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 830 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 831 the call
919 832
920 03-11-2015, MK, tag emdna-V10-01-46 833 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 834 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 835 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 836 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 837 (causing navigator complains)
925 838
926 03-11-2015, MK, tag emdna-V10-01-45 839 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 840 * G4Serialize: Add definition in header for G4String
928 841
929 02-11-2015, MK, tag emdna-V10-01-44 842 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 843 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 844 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 845 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 846 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 847 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 848 -> G4MolecularConfMan is taking care of this
936 849
937 30-10-2015, MK, tag emdna-V10-01-43 850 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 851 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 852 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 853 * Unit tests corrected
941 * G4VITDiscreteProcess added 854 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 855 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 856 * Intermediate update for 10.2 release
944 857
945 27-10-2015, MK, tag emdna-V10-01-42 858 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 859 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 860
948 26-10-2015, MK, tag emdna-V10-01-41 861 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 862 * Sanche model: try to solve std::vector out of bounds
950 863
951 23-10-2015, MK, tag emdna-V10-01-40 864 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 865 * remove all CLHEP::shared_ptr usage
953 866
954 23-10-2015, CV, SM, tag emdna-V10-01-39 867 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 868 * Addded base class G4VDNAPTBModel
956 869
957 28-09-2015, SI, tag emdna-V10-01-38 870 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 871 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 872
960 19-09-2015, MK, tag emdna-V10-01-37 873 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 874 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 875 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 876
964 17-09-2015, MK, tag emdna-V10-01-36 877 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 878 * G4MoleculeGun: Remove compilation warnings
966 879
967 04-09-2015 MK, tag emdna-V10-01-35 880 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 881 * Fix G4MoleculeGun compilation errors
969 882
970 03-09-2015 SI, tag emdna-V10-01-34 883 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 884 * Added stationary regime to all inelastic models
972 885
973 19-08-2015, MK 886 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 887 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 888 - compatible with both Smoluchowski & Gillespie models
976 889
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 890 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 891 * Added easier handling of cumulative proba. in SR elastic models
979 892
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 893 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 894 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 895 declaration of G4MoleculeShoot.
983 896
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 897 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 898 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 899 declaration of G4MoleculeShootMessenger.
987 900
988 12-08-2015, MK, tag emdna-V10-01-29 901 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 902 * Add G4Serialize in the build tree temporarily
990 903
991 12-08-2015, MK, tag emdna-V10-01-28 904 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 905 * G4Serialize added
993 906
994 12-08-2015, MK 907 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 908 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 909
997 24-07-2015, MK 910 24-07-2015, MK
998 - G4MolecularReactionTable 911 - G4MolecularReactionTable
999 * Add get methods 912 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 913 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 914 * Molecule gun : place randomly in a box
1002 915
1003 15-07-2015, MK 916 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 917 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 918 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 919 * processes & models initialisation again
1007 920
1008 15-07-2015, MK, tag emdna-V10-01-26 921 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 922 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 923 * add macro to prevent warnings in non-verbose mode
1011 924
1012 11-07-2015, MK, tag emdna-V10-01-25 925 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 926 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 927 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 928
1016 10-07-2015, MK, tag emdna-V10-01-24 929 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 930 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 931 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 932 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 933 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 934
1022 08-07-2015, MK, tag emdna-V10-01-23 935 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 936 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 937 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 938 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 939 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 940 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 941 - G4MoleculeDefinition:
1029 ::SetFormatedName added 942 ::SetFormatedName added
1030 ::NewConfiguration methods added 943 ::NewConfiguration methods added
1031 ::NewConfiguration added 944 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 945 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 946 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 947 ::Finalize added
1035 - G4MolecularConfiguration: 948 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 949 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 950 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 951 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 952 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 953 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 954 than molecule models
1042 - G4Molecule add constructor where only G4Mol 955 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 956 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 957 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 958 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 959 - G4DNAElectronHoleRecombination added
1047 960
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 961 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 962 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 963 fasterCode usage on shell selection.
1051 964
1052 26-06-2015, MK 965 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 966 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 967 warning message description
1055 968
1056 16-06-205, MK 969 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 970 - Add G4Scheduler::GetGun()
1058 971
1059 16-06-2015, MK, tag emdna-V10-01-21 972 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 973 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 974 - G4DNAIonElasticModel: clean and fix double free
1062 975
1063 12-06-2015, MK, tag emdna-V10-01-20 976 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 977 - remove virtual keyword from G4IT::GetPosition()
1065 978
1066 04-06-2015, MK 979 04-06-2015, MK
1067 - just cosmetics 980 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 981 - remove virtual keyword from G4IT::operator[]
1069 982
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 983 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 984 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 985 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 986 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 987 - Fully qualify std::string elsewhere as needed to adjust
1075 988
1076 22-05-2015, John Allison, tag emdna-V10-01-18 989 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 990 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 991 "G4Threading::IsMasterThread()".
1079 992
1080 17-05-2015, MK, tag emdna-V10-01-17 993 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 994 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 995 - Correct sources.cmake
1083 - Born headears: includes both model versions 996 - Born headears: includes both model versions when proxy header is included
1084 997
1085 16-05-2015, MK, tag emdna-V10-01-16 998 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 999 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 1000 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 1001 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 1002 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 1003 - Add G4DNABornExcitationModel2 (temporary)
1091 1004
1092 15-05-2015, MK, tag emdna-V10-01-15 1005 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 1006 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 1007
1095 14-05-2015, MK, tag emdna-V10-01-14 1008 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 1009 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 1010
1098 14-05-2015, MK, tag emdna-V10-01-13 1011 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 1012 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 1013 - G4ITReaction: try to solve compilation error
1101 1014
1102 12-05-2015, MK, tag emdna-V10-01-12 1015 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 1016 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 1017
1105 12-05-2015, MK, tag emdna-V10-01-11 1018 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 1019 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 1020
1108 11-05-2015, MK, tag emdna-V10-01-10 1021 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 1022 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 1023 +Add GetPartialCrossSection
1111 +Code cleaning 1024 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 1025 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 1026 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 1027 - G4DNAChemistryManager::GetValue(...) added
1115 1028
1116 02-05-2015, MK 1029 02-05-2015, MK
1117 - Update G4TrackState & related classes 1030 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 1031 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 1032 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 1033 +comment useless method
1121 - G4Scheduler: 1034 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 1035 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 1036 +remove fTmpEndTime
1124 +Add CanICarryOn 1037 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 1038 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 1039
1127 18-03-2015, MK, tag emdna-V10-01-08 1040 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 1041 - Same as before, just add the missing History file
1129 1042
1130 18-03-2015, MK, tag emdna-V10-01-07 1043 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 1044 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 1045 instead of a reference
1133 1046
1134 12-02-2015, MK, tag emdna-V10-01-06 1047 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 1048 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 1049 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 1050 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 1051
1139 11-02-2015, MK, tag emdna-V10-01-05 1052 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 1053 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 1054 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 1055 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 1056
1144 16-01-2015, SI, tag emdna-V10-01-04 1057 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 1058 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 1059
1147 14-12-2014, MK, tag emdna-V10-01-03 1060 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 1061 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 1062 - ScreenRutherfordElastic: correct retrieval of water density
1150 1063
1151 13-12-2014, SI, tag emdna-V10-01-02 1064 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 1065 - Added elastic model by H. Tran.
1153 1066
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 1067 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 1068 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 1069 to allow for compilation on Linux/clang-3.5.
1157 1070
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 1071 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 1072 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 1073 include missing files:
1161 G4ITTransportationManager.icc 1074 G4ITTransportationManager.icc
1162 G4KDNode.icc 1075 G4KDNode.icc
1163 G4KDTree.icc 1076 G4KDTree.icc
1164 G4MoleculeFinder.hh 1077 G4MoleculeFinder.hh
1165 1078
1166 01-12-2014, MK, tag emdna-V10-00-63 1079 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 1080 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 1081 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 1082 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 1083 when the particle has reached a boundary
1171 1084
1172 28-11-2014, MK, tag emdna-V10-00-62 1085 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 1086 - Retag
1174 1087
1175 28-11-2014, MK, tag emdna-V10-00-61 1088 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 1089 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 1090 - Fix Brownian navigation
1178 - Some fixes related to scheduler 1091 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 1092 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 1093 - Enhance comments
1181 1094
1182 24-11-2014, MK, tag emdna-V10-00-60 1095 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 1096 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 1097
1185 24-11-2014, MK, tag emdna-V10-00-59 1098 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 1099 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 1100 - Remove useless verbose
1188 - Try to compile on all platforms 1101 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 1102 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 1103 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 1104 Just registering constructor is enough to initialized the chemistry
1192 1105
1193 24-11-2014, MK, tag emdna-V10-00-58 1106 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 1107 - G4FastList: remove all friend declarations
1195 1108
1196 22-11-2014, MK, tag emdna-V10-00-57 1109 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 1110 - Another attempt to compile G4FastList on all platforms
1198 1111
1199 22-11-2014, MK, tag emdna-V10-00-56 1112 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 1113 - Attempt to compile G4FastList on all platforms
1201 1114
1202 21-11-2014, MK, tag emdna-V10-00-55 1115 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 1116 - Attempt to compile G4FastList with clang
1204 1117
1205 21-11-2014, MK, tag emdna-V10-00-54 1118 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 1119 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 1120 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 1121 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 1122 - Update G4ITNavigator2 to the G4Navigator of John
1210 1123
1211 21-11-2014, MK, tag emdna-V10-00-53 1124 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 1125 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 1126 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 1127 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 1128 is false by default --> uses the random time computation for crossing
1216 boundaries 1129 boundaries
1217 1130
1218 20-11-2014, SI, tag emdna-V10-00-52 1131 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 1132 - Improved error message for missing data in PW elastic model
1220 1133
1221 08-11-2014, MK, tag emdna-V10-00-51 1134 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 1135 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 1136 when the asked item is not found
1224 1137
1225 03-11-2014 MK, tag emdna-V10-00-50 1138 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 1139 - correct track creation by G4MoleculeGunMessenger
1227 1140
1228 03-11-2014 MK, tag emdna-V10-00-49 1141 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 1142 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 1143 - Correct a bug in G4MoleculeGun
1231 1144
1232 28-10-2014 PA, tag emdna-V10-00-48 1145 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 1146 - correct compilation warnings
1234 1147
1235 28-10-2014 PA, tag emdna-V10-00-47 1148 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 1149 - correct compilation warnings
1237 1150
1238 28-10-2014 PA, tag emdna-V10-00-46 1151 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 1152 - correction in sources.cmake
1240 1153
1241 28-10-2014 PA, tag emdna-V10-00-45 1154 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 1155 - retag to add LEPTS
1243 1156
1244 28-10-2014 PA, tag emdna-V10-00-44 1157 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 1158 - add LEPTS
1246 1159
1247 25-10-2014 MK, tag emdna-V10-00-43 1160 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 1161 - remove useless G4VITScheduler
1249 1162
1250 25-10-2014 MK, tag emdna-V10-00-42 1163 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 1164 - correct warnings
1252 1165
1253 24-10-2014 MK, tag emdna-V10-00-41 1166 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 1167 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 1168 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 1169 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 1170 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 1171 - G4ITFinder added
1259 - G4VITTrackHolder added 1172 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 1173 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 1174 - code cleaned + useless classes removed
1262 1175
1263 24-10-2014 MK, tag emdna-V10-00-40 1176 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 1177 - G4ITStepManager: remove verbose at closure time
1265 1178
1266 21-10-2014 MK, tag emdna-V10-00-39 1179 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 1180 - try to solve crash at closure time
1268 1181
1269 21-10-2014 MK, tag emdna-V10-00-38 1182 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 1183 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 1184 table when deleted
1272 - update disclaimer 1185 - update disclaimer
1273 1186
1274 17-10-2014 MK, tag emdna-V10-00-37 1187 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 1188 - clean code
1276 - G4ITStepManager: one can ask why simulation 1189 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 1190 - remove useless verbose
1278 1191
1279 17-10-2014 MK, tag emdna-V10-00-36 1192 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 1193 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 1194 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 1195 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 1196
1284 10-10-2014 MK, tag emdna-V10-00-35 1197 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 1198 Avoid use of std::map at the application level in TimeStepAction
1286 1199
1287 07-10-2014 MK, tag emdna-V10-00-34 1200 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 1201 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 1202 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 1203 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 1204
1292 07-10-2014 MK, tag emdna-V10-00-33 1205 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 1206 Initialize G4ITStepManager in G4DNAChemistryManager
1294 1207
1295 17-09-2014 MK, tag emdna-V10-00-32 1208 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 1209 Add G4ITStepManager + messenger
1297 Tag before architecture change 1210 Tag before architecture change
1298 1211
1299 12-07-2014 SI, tag emdna-V10-00-31 1212 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 1213 Removed obsolete class for electron excitation
1301 1214
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 1215 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 1216 - Get rid of obsolete 'register' keyword in code.
1304 1217
1305 05-06-2014 SI, tag emdna-V10-00-29 1218 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 1219 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 1220 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 1221 G4GenericIon usage
1309 - requires G4EMLOW6.39 1222 - requires G4EMLOW6.39
1310 1223
1311 04-06-2014 MK, tag emdna-V10-00-28 1224 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 1225 Remove directory management/include/impl
1313 Prepare for release 1226 Prepare for release
1314 1227
1315 04-06-2014 MK, tag emdna-V10-00-27 1228 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 1229 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 1230 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 1231 Avoid usage of molecule iterators as pointers
1319 1232
1320 03-06-2014 SI, tag emdna-V10-00-26 1233 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 1234 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 1235
1323 28-05-2014 VI, SI tag emdna-V10-00-25 1236 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 1237 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 1238 Ionisation models switch to use angular generator
1326 interface 1239 interface
1327 1240
1328 12.05.2014 MK, tag emdna-V10-00-24 1241 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 1242 Try to remove warnings 4
1330 1243
1331 12.05.2014 MK, tag emdna-V10-00-23 1244 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 1245 Try to remove warnings 3
1333 1246
1334 12.05.2014 MK, tag emdna-V10-00-22 1247 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 1248 Try to remove warnings 2
1336 1249
1337 12.05.2014 MK, tag emdna-V10-00-21 1250 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 1251 Try to remove warnings
1339 1252
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 1253 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 1254 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 1255 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 1256 G4EMLOW6.38 needed
1344 1257
1345 07-04-2014 SI tag emdna-V10-00-19 1258 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 1259 Changed faster method interpolation in
1347 G4DNABornIonisationModel 1260 G4DNABornIonisationModel
1348 1261
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 1262 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 1263 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 1264 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 1265 Corrected order of inclusion of some headers and use of <>/"".
1353 1266
1354 04-04-2014 MK tag emdna-V10-00-17 1267 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 1268 Try to solve warnings when G4VERBOSE is off
1356 1269
1357 02-04-2014 MK tag emdna-V10 1270 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 1271 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 1272
1360 02-04-2014 MK tag emdna-V10 1273 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 1274 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 1275
1363 02-04-2014 MK tag emdna-V10 1276 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1277 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1278 -> this part is withdrawn for now
1366 1279
1367 02-04-2014 MK tag emdna-V10 1280 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1281 - version 2 : try fixing the build error on mac
1369 1282
1370 02-04-2014 MK tag emdna-V10 1283 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1284 - version 1 : try to fix build errors and warnings on mac
1372 1285
1373 02-04-2014 MK tag emdna-V10 1286 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1287 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1288 (G4MemStat & G4MolecularConfiguration)
1376 1289
1377 02-04-2014 MK tag emdna-V10 1290 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1291 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1292 (problem coming from having as a friend class a template argument)
1380 1293
1381 02-04-2014 MK tag emdna-V10 1294 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1295 - try to fix build error on windows platform
1383 1296
1384 01-04-2014 MK tag emdna-V10 1297 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1298 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1299 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1300
1388 01-04-2014 MK tag emdna-V10 1301 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1302 - reset CMakeLists.txt
1390 1303
1391 01-04-2014 MK tag emdna-V10 1304 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1305 - update chemistry
1393 1306
1394 01-04-2014 SI tag emdna-V10-00-05 1307 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1308 - Modified calculation of secondary kinetic for fast code
1396 1309
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1310 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1311 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1312 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1313 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1314
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1315 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1316 - Added several clear() to vectors for MT
1404 1317
1405 17-03-2014 SI tag emdna-V10-00-02 1318 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1319 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1320 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1321 to be used with G4EMLOW6.36
1409 1322
1410 12-12-2013 M.K tag emdna-V10-00-01 1323 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1324 - G4DNAMolecularMaterial: Remove unused variable
1412 1325
1413 12-12-2013 M.K tag emdna-V10-00-00 1326 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1327 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1328 a model is not created at initialisation time
1416 1329
1417 21-11-2013 V.I. tag emdna-V09-06-22 1330 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1331 - G4ITStepProcessor2 - removed obsolete unused header
1419 1332
1420 01-11-2013 M.K tag emdna-V09-06-21 1333 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1334 - Correct incorrect singleton check introduced in previous tag
1422 1335
1423 01-11-2013 M.K tag emdna-V09-06-20 1336 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1337 - Prepare for release bis
1425 1338
1426 01-11-2013 M.K tag emdna-V09-06-19 1339 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1340 - Prepare for release
1428 1341
1429 10-10-2013 M.K. tag emdna-V09-06-18 1342 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1343 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1344
1432 06-10-2013 M.K. tag emdna-V09-06-17 1345 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1346 - Same as before once again
1434 1347
1435 03-10-2013 M.K. tag emdna-V09-06-16 1348 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1349 - Same as before
1437 1350
1438 03-10-2013 M.K. tag emdna-V09-06-15 1351 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1352 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1353 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1354 by the user - stage 1
1442 1355
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1356 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1357 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1358 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1359 with virtual keyword in G4VITProcess.
1447 1360
1448 12-09-2013 M.K. tag emdna-V09-06-13 1361 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1362 Correction of an inadvertent modification introduced in previous tag
1450 1363
1451 12-09-2013 M.K. tag emdna-V09-06-12 1364 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1365 Correct bound checks in G4ITManager.icc
1453 1366
1454 16-08-2013 S.I. tag emdna-V09-06-11 1367 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1368 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1369
1457 16-08-2013 S.I. tag emdna-V09-06-10 1370 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1371 Added G4DNAIons
1459 1372
1460 25-06-2013 M.K. tag emdna-V09-06-09 1373 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1374 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1375 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1376 auto_ptr according to c++ std version
1464 1377
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1378 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1379 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1380 for problem accidentally introduced in previous tag.
1468 1381
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1382 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1383 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1384 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1385 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1386 compilation on Windows.
1474 1387
1475 06-06-2013 S.I. tag emdna-V09-06- 1388 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1389 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1390 Requires G4EMLOW version 6.33
1478 1391
1479 25-05-2013 M.K. tag emdna-V09-06- 1392 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1393 *Fix warning compilation in G4KDMap for specific gcc version
1481 1394
1482 24-05-2013 M.K. tag emdna-V09-06- 1395 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1396 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1397 but still not in usage
1485 1398
1486 23-05-2013 M.K. tag emdna-V09-06- 1399 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1400 * G4KDMap : try fix error on std:ceil call on windows
1488 1401
1489 23-V09-06-03-05-2013 M.K. tag emd 1402 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1403 * G4KDMap : used deque::iterator
1491 1404
1492 1405
1493 22-05-2013 M.K. tag emdna-V09-06- 1406 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1407 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1408 * G4KDMap : pop out elements from map
1496 1409
1497 22-05-2013 M.K. tag emdna-V09-06-00 1410 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1411 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1412 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1413 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1414 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1415 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1416 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1417 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1418 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1419 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1420
1508 12-11-2012 M.K tag emdna-V09-05- 1421 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1422 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1423 coverity warnings (rev 64993)
1511 1424
1512 06-11-2012 G.Cosmo tag emdna-V09 1425 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1426 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1427 for objects in maps...
1515 1428
1516 04-11-2012 M.K. tag emdna-V09-05-33 1429 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1430 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1431 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1432 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1433 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1434 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1435 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1436 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1437 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1438 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1439 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1440 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1441 add "else" before "if" statements and
1529 add variables to avoid ma 1442 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1443 dna.files : update files (rev 64725)
1531 1444
1532 03-11-2012 S.I. tag emdna-V09-05-32 1445 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1446 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1447 classes
1535 1448
1536 24-10-2012 M.K tag emdna-V09 1449 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1450 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1451 (previously commented)
1539 1452
1540 23-10-2012 M.K tag emdna-V09 1453 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1454 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1455 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1456
1544 18-10-2012 M.K tag emdna-V09 1457 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1458 Previous tag did not include history changes
1546 1459
1547 18-10-2012 M.K tag emdna-V09 1460 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1461 Remove warning
1549 1462
1550 17-10-2012 M.K tag emdna-V09 1463 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1464 Correct a typo from previous tag
1552 1465
1553 17-10-2012 M.K tag emdna-V09 1466 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1467 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1468 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1469 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1470
1558 01-10-2012 SI, P.Pater tag emdna-V09 1471 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1472 Force kinetic energy to zero for real killings in models.
1560 1473
1561 12-07-2012 G.Cosmo tag emdna-V09 1474 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1475 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1476 constants, in plan to remove implicit inclusion from globals.hh.
1564 1477
1565 11.07.2012 M.K tag emdna-V09 1478 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1479 Correct warnings introduce in previous tag
1567 1480
1568 11.07.2012 M.K tag emdna-V09 1481 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1482 Tag to be proposed
1570 1483
1571 25.06.2012 M.K tag emdna-V09-05-21 1484 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1485 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1486 Modify molecule's name
1574 1487
1575 21.06.2012 S.I tag emdna-V09-05-20 1488 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1489 Update of electron elastic scattering low limit
1577 1490
1578 09.06.2012 M.K tag emdna-V09-05-19 1491 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1492 Fixed shadowing
1580 1493
1581 04.06.2012 M.K tag emdna-V09-05-18 1494 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1495 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1496
1584 24.05.2012 M.K tag emdna-V09-05-17 1497 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1498 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1499
1587 23.05.2012 M.K tag emdna-V09-05-16 1500 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1501 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1502 G4ITStepManager
1590 Prevent call of destructor of G4I 1503 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1504 G4DNAChemistryManager
1592 1505
1593 23.05.2012 M.K tag emdna-V09-05-15 1506 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1507 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1508 when one of its methods is called using a material that is
1596 not defined as a molecule 1509 not defined as a molecule
1597 1510
1598 21.05.2012 M.K tag emdna-V09-05-14 1511 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1512 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1513 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1514 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1515 Modify all models to use G4DNAMolecularMaterial
1603 1516
1604 14.05.2012 M.K tag emdna-V09-05-13 1517 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1518 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1519 Add G4DNADamages
1607 1520
1608 10.05.2012 M.K tag emdna-V09-05-12 1521 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1522 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1523 from UserReactionAction::EndProcessing()
1611 1524
1612 08.05.2012 M.K tag emdna-V09-05-11 1525 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1526 Use inverseErf from CLHEP
1614 1527
1615 03.05.2012 M.K tag emdna-V09-05-10 1528 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1529 Add erfc function for windows compilator (VC++)
1617 1530
1618 03.05.2012 M.K tag emdna-V09-05-09 1531 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1532 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1533
1621 03.05.2012 M.K tag emdna-V09-05-08 1534 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1535 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1536 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1537 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1538 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1539 Reset() at the end of G4ITStepManager::Process()
1627 1540
1628 30.03.2012 M.K tag emdna-V09-05-07 1541 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1542 Same as emdna-V09-05-06
1630 1543
1631 30.03.2012 M.K tag emdna-V09-05-06 1544 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1545 1) Add separate navigator for synchronous tracking
1633 New classes : 1546 New classes :
1634 * G4ITTransportationManager 1547 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1548 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1549 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1550 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1551 3) Solve bugs with normal and brownian ITTransportation
1639 1552
1640 14.03.2012 M.K tag emdna-V09-05-05 1553 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1554 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1555 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1556 -> become size_t + related changes
1644 * when a poststep process propo 1557 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1558 => considered as a time, and transportation::computestep
1646 is used 1559 is used
1647 1560
1648 14.03.2012 M.K tag emdna-V09-05-04 1561 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1562 Fix compilation warning
1650 1563
1651 14.03.2012 M.K tag emdna-V09-05-03 1564 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1565 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1566 Fix coverity warnings
1654 1567
1655 18.01.2012 S.I. tag emdna-V09 1568 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1569 Removal of G4Water* classes in utils
1657 1570
1658 11.01.2012 M.K tag emdna-V09 1571 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1572 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1573 concerning the final position of the solvated electron
1661 using Sanche thermalization 1574 using Sanche thermalization
1662 1575
1663 16.12.2011 S.I tag emdna-V09 1576 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1577 Updated source of cross section file for elastic scattering
1665 1578
1666 25.11.2011 M.K tag emdna-V09 1579 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1580 Correct a typo in previous tag
1668 1581
1669 25.11.2011 M.K tag emdna-V09 1582 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1583 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1584 rather than center of mass in DNAMolecularReaction
1672 1585
1673 21.11.2011 M.K tag emdna-V09 1586 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1587 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1588 avoid conflicts with ROOT.
1676 Add short class description (comm 1589 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1590 in JavaDoc style for doxygen use.
1678 1591
1679 21.11.2011 M.K tag emdna-V09 1592 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1593 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1594 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1595 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1596 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1597 when the time steps returned by the time stepper
1685 and the processes are equal 1598 and the processes are equal
1686 Improve verbose 1599 Improve verbose
1687 1600
1688 21.11.2011 M.K tag emdna-V09 1601 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1602 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1603 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1604 Correct verbose in new models & process
1692 1605
1693 18.11.2011 M.K tag emdna-V09 1606 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1607 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1608 in G4DNAChemistryManager
1696 1609
1697 18.11.2011 M.K tag emdna-V09 1610 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1611 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1612 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1613 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1614
1702 15.11.2011 G.Cosmo tag emdna-V09 1615 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1616 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1617 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1618 Windows.
1706 Fixed compilation warning on icc 1619 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1620 G4MolecularDecayTable.cc
1708 1621
1709 10.11.2011 M.K. tag emdna-V09 1622 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1623 Fix a bug in G4DNATransformElectronModel
1711 1624
1712 10.11.2011 M.K. tag emdna-V09 1625 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1626 Clean classes for release
1714 Add comment into source 1627 Add comment into source
1715 Change name of some methods 1628 Change name of some methods
1716 Transform two independent singlet 1629 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1630 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1631 (ITStepMan + DNAChemMan)
1719 1632
1720 10.11.2011 M.K. tag emdna-V09 1633 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1634 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1635 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1636 the chemistryManager.
1724 1637
1725 09.11.2011 M.K. tag emdna-V09 1638 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1639 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1640 in G4TrackListNode.
1728 Simplify and improve the use of d 1641 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1642 Add more convenient methods in userReactionAction
1730 1643
1731 08.11.2011 M.K. tag emdna-V09 1644 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1645 Fix coverity warnings
1733 1646
1734 07.11.2011 M.K. tag emdna-V09 1647 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1648 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1649 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1650 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1651 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1652 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1653 Clean classes for release
1741 1654
1742 03.11.2011 M.K. tag emdna-V09 1655 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1656 Add dna libs in sources.cmake
1744 1657
1745 03.11.2011 M.K. tag emdna-V09 1658 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1659 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1660 Add dna includes in sources.cmake
1748 1661
1749 01.11.2011 M.K. tag emdna-V09 1662 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1663 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1664 G4ITTransportation, G4TrackList on Windows
1752 1665
1753 01.11.2011 G.Cosmo 1666 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1667 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1668 updated GNUMakefiles to have it properly defined.
1756 1669
1757 31.10.2011 M.K tag emdna-V09-04-35 1670 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1671 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1672 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1673 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1674 Fix windows compilation errors & warnings
1762 1675
1763 28.10.2011 M.K tag emdna-V09-04-34 1676 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1677 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1678 Plus remove obsolete G4Exception
1766 1679
1767 28.10.2011 M.K tag emdna-V09-04-33 1680 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1681 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1682 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1683 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1684 to models
1772 1685
1773 27.10.2011 M.K tag emdna-V09-04-32 1686 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1687 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1688 coverity errors.
1776 1689
1777 26.10.2011 M.K tag emdna-V09-04-31 1690 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1691 change std::shared_ptr to CLHEP::shared_ptr
1779 1692
1780 26.10.2011 M.K. tag emdna-V09-04-30 1693 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1694 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1695 G4MolecularConfiguration::fManager added
1783 1696
1784 26.10.2011 M.K. tag emdna-V09-04-29 1697 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1698 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1699 Add electron solvatation process & models
1787 Add chemical processes 1700 Add chemical processes
1788 1701
1789 21.10.2011 M.K. tag emdna-V09-04-28 1702 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1703 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1704 emdna-V09-04-24
1792 1705
1793 21.10.2011 M.K. tag emdna-V09-04-27 1706 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1707 CMake fixes from emdna-V09-04-24
1795 1708
1796 21.10.2011 M.K. tag emdna-V09-04-26 1709 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1710 Bug fixes and new dev from the previous tag
1798 1711
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1712 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1713 Extension of ionisation by HZE proposed by Z. Francis
1801 1714
1802 20.10.2011 M.K. tag emdna-V09-04-24 1715 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1716 Bug fixes and new dev from the previous tag
1804 1717
1805 07.10.2011 M.K. tag emdna-V09-04-23 1718 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1719 First tag with "molecules" files
1807 1720
1808 07.10.2011 M.K. tag emdna-V09-04-22 1721 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1722 Add molecules+management directory
1810 First tag with "management" files 1723 First tag with "management" files
1811 1724
1812 09.09.2011 G.Folger tag emdna-V09 1725 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1726 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1727 G4DNAMoleculeManager.cc
1815 1728
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1729 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1730 Updated sources.make and CMakeLists.txt
1818 1731
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1732 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1733 Reorganized whole architecture.
1821 1734
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1735 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1736 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1737 if no deexcitation)
1825 1738
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1739 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1740 Changed code (em0006) numbering for G4Exception
1828 1741
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1742 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1743 Switched to new G4Exception syntax
1831 1744
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1745 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1746 Added enhanced debug information in ionisation models
1834 1747
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1748 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1749 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1750
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1751 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1752 Removed obsolete information.
1840 1753
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1754 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1755 Updated deexcitation initialization in ionization models.
1843 1756
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1757 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1758 Coverity warnings removal
1846 1759
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1760 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1761 - Increased energy limits for
1849 G4DNAChargeIncrease 1762 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1763 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1764 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1765 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1766 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1767 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1768 of ionisation classes for Auger e-
1856 1769
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1770 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1771 Further compilation warnings removal
1859 1772
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1773 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1774 Compilation warnings removal
1862 1775
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1776 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1777 added Atomic Deexcitation to Ionisation Models
1865 1778
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1779 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1780 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1781 G4DNADingfelderChargeIncreaseModel.cc.
1869 1782
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1783 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1784 Changed process sub-type numbering.
1872 1785
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1786 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1787 Fixed coverity warnings.
1875 1788
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1789 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1790 Updated all models for handling of variable density.
1878 1791
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1792 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1793 Addition of dependencies to configuration files.
1881 1794
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1795 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1796 Addition of all files.
1884 1797
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1798 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1799 Creation of dna sub-package in electromagnetic category.