| Geant4 Cross Reference |
1 # Category emdna History 1 # Category emdna History
2 2
3 See `CONTRIBUTING.rst` for details of **requir 3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological 4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for wr 5 It must **not** be used as a substitute for writing good git commit messages!
6 6
7 ---------------------------------------------- 7 -------------------------------------------------------------------------------
8 8
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) <<
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) 9 ## 2023-11-14 Ben Morgan (emdna-V11-01-25)
106 - Use G4FindDataDir to access data libraries i 10 - Use G4FindDataDir to access data libraries in place of raw `getenv`.
107 11
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) 12 ## 2023-11-11 Hoang Tran (emdna-V11-01-24)
109 - correct fastercode section for dna opt6 13 - correct fastercode section for dna opt6
110 14
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) 15 ## 2023-10-12 Hoang Tran (emdna-V11-01-23)
112 - correct scavenger counter for oxygen 16 - correct scavenger counter for oxygen
113 17
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) 18 ## 2023-10-11 Hoang Tran (emdna-V11-01-22)
115 - Fixed the K shell bug in G4DNARuddIonisation 19 - Fixed the K shell bug in G4DNARuddIonisationExtendedModel.cc
116 20
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) 21 ## 2023-10-10 Hoang Tran (emdna-V11-01-21)
118 - improved equilibrium processes, introduced G 22 - improved equilibrium processes, introduced G4ChemEquilibrium
119 23
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) 24 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20)
121 - In navigation classes, removed references to 25 - In navigation classes, removed references to G4TouchableHistoryHandle,
122 which is now deprecated. 26 which is now deprecated.
123 27
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) 28 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19)
125 - Removed references to unused G4GRSSolid and 29 - Removed references to unused G4GRSSolid and G4GRSVolume in navigator classes.
126 30
127 ## 2023-08-29 (emdna-V11-01-18) 31 ## 2023-08-29 (emdna-V11-01-18)
128 - Fix minor/obvious Coverity issues 32 - Fix minor/obvious Coverity issues
129 33
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) 34 ## 2023-07-21 Ben Morgan (emdna-V11-01-17)
131 - Apply core clang-tidy fixes plus those for 35 - Apply core clang-tidy fixes plus those for
132 - Cons/destructor modernization 36 - Cons/destructor modernization
133 - Readability and logic for conditionals/boo 37 - Readability and logic for conditionals/booleans
134 38
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) 39 ## 2023-07-12 Ben Morgan (emdna-V11-01-16)
136 - Apply patch from [GitHub PR 58](https://gith 40 - Apply patch from [GitHub PR 58](https://github.com/Geant4/geant4/pull/58)
137 - Use std::erfc to avoid precision loss 41 - Use std::erfc to avoid precision loss
138 - Remove unused header 42 - Remove unused header
139 43
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) 44 ## 2023-06-10 Hoang Tran (emdna-V11-01-15)
141 - minor correction for DNA material in option6 45 - minor correction for DNA material in option6
142 46
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) 47 ## 2023-06-09 Hoang Tran (emdna-V11-01-14)
144 - use analytical method for DNA material in op 48 - use analytical method for DNA material in option6, water is unchanged
145 49
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 50 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-01-13)
147 - G4DNARuddIonisationExtendedModel - model re- 51 - G4DNARuddIonisationExtendedModel - model re-written: shared date between
148 threads, applicable for scaled energy interv 52 threads, applicable for scaled energy interval 100 eV to 100 MeV, if for
149 an ion data is not available proton x-sectio 53 an ion data is not available proton x-section and effective charge are
150 used, sampling of delta-electron is done usi 54 used, sampling of delta-electron is done using two regions regression method
151 55
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) 56 ## 2023-05-25 Hoang Tran (emdna-V11-01-12)
153 - Modified DNA cross section file name to new 57 - Modified DNA cross section file name to new G4EMLOW8.4
154 58
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) 59 ## 2023-05-19 Hoang Tran (emdna-V11-01-11)
156 - Add DNA cross section to dna_option6 60 - Add DNA cross section to dna_option6
157 61
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) 62 ## 2023-05-17 Hoang Tran (emdna-V11-01-10)
159 - Fix Compilation warnings on XCode 63 - Fix Compilation warnings on XCode
160 64
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) 65 ## 2023-05-04 Hoang Tran (emdna-V11-01-09)
162 - correct the initial values of G4DNAEventSche 66 - correct the initial values of G4DNAEventScheduler
163 67
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) 68 ## 2023-04-28 Hoang Tran (emdna-V11-01-08)
165 - add time structure (pulsed beam) to water ra 69 - add time structure (pulsed beam) to water radiolysis (G4VUserPulseInfo)
166 70
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) 71 ## 2023-04-26 Hoang Tran (emdna-V11-01-07)
168 - correct KDTree bug 72 - correct KDTree bug
169 73
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) 74 ## 2023-03-24 Hoang Tran (emdna-V11-01-06)
171 - icsd physicslist: deleted unused model, 75 - icsd physicslist: deleted unused model,
172 - Apdated RegisterModel function with new stru 76 - Apdated RegisterModel function with new structure
173 - added model data to G4DNAMaterialManager sin 77 - added model data to G4DNAMaterialManager singleton
174 78
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) 79 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05)
176 - Fixed compilation warning on macOS/XCode for 80 - Fixed compilation warning on macOS/XCode for implicit type conversion
177 in G4DNAVacuumModel::Initialise(). 81 in G4DNAVacuumModel::Initialise().
178 82
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) 83 ## 2023-02-09 Hoang Tran (emdna-V11-01-04)
180 - Introduced G4DNAMaterialManager to manage av 84 - Introduced G4DNAMaterialManager to manage available DNA material
181 and keeps DNA cross section data in one thread 85 and keeps DNA cross section data in one thread.
182 - minor change in G4VDNAModel 86 - minor change in G4VDNAModel
183 87
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) 88 ## 2023-01-27 Hoang Tran (emdna-V11-01-03)
185 - reorganize multiple material model of PTB mo 89 - reorganize multiple material model of PTB model.
186 G4VDNAModel plays like a data layer for multip 90 G4VDNAModel plays like a data layer for multiple material model.
187 The concrete models are independent of G4DNAMo 91 The concrete models are independent of G4DNAModelInterface.
188 92
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) 93 ## 2023-01-17 Hoang Tran (emdna-V11-01-02)
190 - replaced string to material index and clean 94 - replaced string to material index and clean the files(G4DNAPTBExcitationModel,
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, 95 G4DNAPTBIonisationModel, G4DNAPTBElasticModel,G4DNAPTBIonisationStructure,
192 G4DNAPTBExcitationStructure) - PTB models 96 G4DNAPTBExcitationStructure) - PTB models
193 - added material pointer members for each conc 97 - added material pointer members for each concrete models(PTB models)
194 - removed unused objects (G4DataVector()) 98 - removed unused objects (G4DataVector())
195 99
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) 100 ## 2023-01-06 Hoang Tran (emdna-V11-01-01)
197 - clean G4DNAModelInterface file for the model 101 - clean G4DNAModelInterface file for the model combination of different materials
198 102
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) 103 ## 2022-12-12 Hoang Tran (emdna-V11-01-00)
200 - fix coverity of G4DNARuddIonisationExtendedM 104 - fix coverity of G4DNARuddIonisationExtendedModel, G4DNADingfelderChargeIncreaseModel
201 (Uninitialized scalar variable) from cand1 ana 105 (Uninitialized scalar variable) from cand1 analysis
202 106
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 107 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-00-39)
204 - G4DNARuddIonisationExtendedModel - fixed com 108 - G4DNARuddIonisationExtendedModel - fixed common work between DNA physics and
205 radioactive decay module - before this upd << 109 radioactive decay module - before this update test2.in macro crash, because
206 only 5 ions have data needed for this mode 110 only 5 ions have data needed for this model; with this modification of the
207 model scaling relation to the carbon ion i 111 model scaling relation to the carbon ion is used for any ion, which has
208 no data; low-energy limit is used now more << 112 no data; low-energy limit is used now more correctly - all ions are stopped
209 but not killed, because they may have radi 113 but not killed, because they may have radioactive decay at rest; all commented
210 lines are removed from the class 114 lines are removed from the class
211 115
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) 116 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38)
213 - Fixed more compilation warnings for implicit 117 - Fixed more compilation warnings for implicit type conversions.
214 118
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) 119 ## 2022-11-22 Hoang Tran (emdna-V11-00-37)
216 - delete unused tests in dna (G4DNAProcessTest 120 - delete unused tests in dna (G4DNAProcessTest.cc and G4DNATest.cc)
217 121
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) 122 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36)
219 - Fixed compilation warnings for implicit type 123 - Fixed compilation warnings for implicit type conversions on macOS/XCode 14.1.
220 124
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 125 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-00-35)
222 - G4DNAUeharaScreenedRutherfordElasticModel - << 126 - G4DNAUeharaScreenedRutherfordElasticModel - code cleanup; introduced
223 low and high energy limit for the model; r 127 low and high energy limit for the model; removed missleading G4Exception
224 128
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) 129 ## 2022-11-01 Hoang Tran (emdna-V11-00-34)
226 - Fix Coverity issues for ref-09 130 - Fix Coverity issues for ref-09
227 131
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) 132 ## 2022-10-10 Hoang Tran (emdna-V11-00-33)
229 - minor correction of IRT-syn model (chemistry 133 - minor correction of IRT-syn model (chemistry). Contact reactions should not happen
230 after 1 ps. 134 after 1 ps.
231 135
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- 136 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna-V11-00-32)
233 - Add nitrogen models from PTra code 137 - Add nitrogen models from PTra code
234 138
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) 139 ## 2022-10-10 Hoang Tran (emdna-V11-00-31)
236 - Fixed minor mistake of file name in G4DNARPW 140 - Fixed minor mistake of file name in G4DNARPWBAIonisationModel,
237 - Added protection for HighEnergyLimit/LowEner 141 - Added protection for HighEnergyLimit/LowEnergyLimit in G4DNARPWBAIonisationModel and
238 G4DNARPWBAExcitationModel 142 G4DNARPWBAExcitationModel
239 143
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) 144 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30)
241 - Fixed compilation warnings on Intel/icx comp 145 - Fixed compilation warnings on Intel/icx compiler for variables set
242 but not used in G4ITNavigator2. 146 but not used in G4ITNavigator2.
243 147
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) 148 ## 2022-10-05 Hoang Tran (emdna-V11-00-29)
245 - Fix user's report for IRT model. 149 - Fix user's report for IRT model.
246 If the first IRTSampling won't give any rea 150 If the first IRTSampling won't give any reactions, end the simu. No StepProcessor in this simu
247 151
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) 152 ## 2022-10-03 Hoang Tran (emdna-V11-00-28)
249 - Fix Coverity static analysis for ref-08 153 - Fix Coverity static analysis for ref-08
250 uninit_member in G4DNAMillerGreenExcitationMo 154 uninit_member in G4DNAMillerGreenExcitationModel, G4DNARuddIonisationModel, G4DNADingfelderChargeDecreaseModel,
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI 155 G4DNADingfelderChargeIncreaseModel,G4DNARuddIonisationExtendedModel, G4DNAGillespieDirectMethod
252 Use auto & instead of auto : G4ITFinder, G4DN 156 Use auto & instead of auto : G4ITFinder, G4DNAScavengerMaterial, G4MoleculeCounter, G4OCTREE
253 157
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) 158 ## 2022-09-08 Hoang Tran (emdna-V11-00-27)
255 - Resolve dependency inconsistencies : 159 - Resolve dependency inconsistencies :
256 dna/management/include/G4ChemicalMoleculeF 160 dna/management/include/G4ChemicalMoleculeFinder.hh includes G4Molecule.hh from G4emdna-molman
257 dna/management/include/G4UserMeshAction.hh 161 dna/management/include/G4UserMeshAction.hh includes G4DNAMesh.hh from G4emdna-utils
258 dna/management/include/G4OctreeFinder.hh i 162 dna/management/include/G4OctreeFinder.hh includes G4IRTUtils.hh from G4emdna-utils
259 163
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) 164 ## 2022-09-05 Ben Morgan (emdna-V11-00-26)
261 - Partially resolve dependency inconsistencies 165 - Partially resolve dependency inconsistencies
262 - NB: cannot be resolved fully without intro 166 - NB: cannot be resolved fully without introducing a cycle between
263 G4emdna-man, G4emdna-molman, G4emdna-utils 167 G4emdna-man, G4emdna-molman, G4emdna-utils.
264 168
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) 169 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25)
266 - Define G4CT_MAX_COUNT for changing "compile 170 - Define G4CT_MAX_COUNT for changing "compile time counter" depth to fix build
267 errors on NVHPC compiler. 171 errors on NVHPC compiler.
268 172
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 173 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-00-24)
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo << 174 - G4DNAExcitation, G4DNAVibExcitation, G4DNARotExcitation - class
271 cleanup according to the recent G4VEmProce 175 cleanup according to the recent G4VEmProcess base class; model
272 headers are moved to source; C++11 keyward << 176 headers are moved to source; C++11 keywards are introduced.
273 177
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) 178 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23)
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela 179 - G4DNABornIonisationModel1.cc, G4DNACPA100ElasticModel.cc,
276 G4DNACPA100IonisationModel.cc, G4DNAChampion 180 G4DNACPA100IonisationModel.cc, G4DNAChampionElasticModel.cc,
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo 181 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglouIonisationModel.cc,
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx 182 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonExcitationModel.cc,
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis 183 G4DNARPWBAIonisationModel.cc, G4DNARelativisticIonisationModel.cc,
280 G4DNASancheExcitationModel.cc : 184 G4DNASancheExcitationModel.cc :
281 use G4FindDataDir("G4LEDATA") to find datase 185 use G4FindDataDir("G4LEDATA") to find dataset path on place of getenv.
282 186
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) 187 ## 2022-06-03 Hoang Tran (emdna-V11-00-22)
284 - correct DNA ion definitions in G4DNARuddIoni 188 - correct DNA ion definitions in G4DNARuddIonisationExtendedModel.
285 189
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) 190 ## 2022-06-01 Hoang Tran (emdna-V11-00-21)
287 - G4Octree : fixed Coverity warning. 191 - G4Octree : fixed Coverity warning.
288 192
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) 193 ## 2022-05-24 Hoang Tran (emdna-V11-00-20)
290 - update data structure to improve performance 194 - update data structure to improve performance of the mesoscopic model.
291 195
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) 196 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19)
293 - G4ITTransportation: fixed misuse of bitwise 197 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294 198
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) 199 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18)
296 - Added missing headers. 200 - Added missing headers.
297 201
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) 202 ## 2022-05-11 Hoang Tran (emdna-V11-00-17)
299 - change the scavenging filter of the IRT beyo 203 - change the scavenging filter of the IRT beyond 1 us proposed by Naoki and Jose
300 204
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) 205 ## 2022-05-02 Hoang Tran (emdna-V11-00-16)
302 - Add localthread for fUse of G4VMoleculeCount 206 - Add localthread for fUse of G4VMoleculeCounter
303 207
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa 208 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoang Tran (emdna-V11-00-15)
305 - Incorporation of model based on RPWBA to tra 209 - Incorporation of model based on RPWBA to transport protons at 100-300 MeV.
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI 210 - Added G4DNARPWBAExcitationModel, G4DNARPWBAIonisationModel.
307 211
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) 212 ## 2022-04-25 Hoang Tran (emdna-V11-00-14)
309 - add UserBrownianAction in G4DNABrownianTrans 213 - add UserBrownianAction in G4DNABrownianTransportation and
310 G4DNAMolecularDissociation 214 G4DNAMolecularDissociation
311 - replace G4int by int64_t for width integer t 215 - replace G4int by int64_t for width integer types
312 - add fResetScavenger in G4SchedulerMessenger 216 - add fResetScavenger in G4SchedulerMessenger
313 217
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) 218 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13)
315 - save local instances for recurrent access to << 219 - save local instances for recurrent access to particle definition in
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo 220 G4DNAMillerGreenExcitationModel, G4DNARuddIonisationExtendedModel and
317 G4DNARuddIonisationModel 221 G4DNARuddIonisationModel
318 - use G4Pow and G4Log instead of std::pow and 222 - use G4Pow and G4Log instead of std::pow and std::log
319 - inside G4DNARuddIonisationExtendedModel comm 223 - inside G4DNARuddIonisationExtendedModel commented out ions that are not
320 inside G4DNAGenericIonsManager 224 inside G4DNAGenericIonsManager
321 225
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) 226 ## 2022-04-14 Hoang Tran (emdna-V11-00-12)
323 - Debug the report #2235 which might be relate 227 - Debug the report #2235 which might be related to KDtree algorithm
324 - Clean code 228 - Clean code
325 - Delete G4ITFinder.cc 229 - Delete G4ITFinder.cc
326 230
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) 231 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11)
328 - save local instances for recurrent access to << 232 - save local instances for recurrent access to particle definition in
329 G4DNADingfelderChargeDecreaseModel and G4DNADi 233 G4DNADingfelderChargeDecreaseModel and G4DNADingfelderChargeIncreaseModel
330 - use G4Pow and G4Log instead of std::pow and 234 - use G4Pow and G4Log instead of std::pow and std::log
331 235
332 ## 2022-03-18 SI (emdna-V11-00-10) 236 ## 2022-03-18 SI (emdna-V11-00-10)
333 - add protection in G4DNACPA100IonisationModel 237 - add protection in G4DNACPA100IonisationModel for cum. xs interpolation
334 238
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) 239 ## 2022-03-15 Hoang Tran (emdna-V11-00-09)
336 - remove macro commands to control the chemist 240 - remove macro commands to control the chemistry models in G4SchedulerMessenger
337 (creating models in G4SchedulerMessenger can m 241 (creating models in G4SchedulerMessenger can make circular dependency problems)
338 - add flag OctreeFinder in IRT_syn's Initializ 242 - add flag OctreeFinder in IRT_syn's Initialize()
339 243
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) 244 ## 2022-03-04 Hoang Tran (emdna-V11-00-08)
341 - add macro commands to control the chemistry 245 - add macro commands to control the chemistry models,
342 parameters including the chemical molecules an 246 parameters including the chemical molecules and reaction list involved in the radiolysis
343 247
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) 248 ## 2022-02-18 Hoang Tran (emdna-V11-00-07)
345 - optimize IRT-syn model, use reaction radius 249 - optimize IRT-syn model, use reaction radius and reaction type from the reaction table
346 - delete G4VReactionType, G4DNAReactionTypeMan 250 - delete G4VReactionType, G4DNAReactionTypeManager, G4DNATotallyDiffusionControlled,
347 G4DNAPartiallyDiffusionControlled 251 G4DNAPartiallyDiffusionControlled
348 - delete G4DNAIRT_geomtries 252 - delete G4DNAIRT_geomtries
349 253
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) 254 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06)
351 - `G4ITTransportation`: Make `PrepareState` mo 255 - `G4ITTransportation`: Make `PrepareState` more function-like, expect semicolon
352 - `G4DNAPolyNucleotideReactionProcess`: 256 - `G4DNAPolyNucleotideReactionProcess`:
353 - Move `PrepareState` and `State` macros int 257 - Move `PrepareState` and `State` macros into `.cc` file
354 - Make `PrepareState` more function-like, ex 258 - Make `PrepareState` more function-like, expect semicolon
355 - Move variable `pMoleculeA` under `G4VERBOS 259 - Move variable `pMoleculeA` under `G4VERBOSE`
356 260
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) 261 ## 2022-02-10 Hoang Tran (emdna-V11-00-05)
358 - add the condition of water material for the 262 - add the condition of water material for the OUTSIDE_OF_MOTHER_VOLUME
359 warning in G4DNAMolecularDissociation::DecayIt 263 warning in G4DNAMolecularDissociation::DecayIt()
360 264
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) 265 ## 2022-02-3 Hoang Tran (emdna-V11-00-04)
362 - modify the macro in G4Molecule.cc and G4ITTy 266 - modify the macro in G4Molecule.cc and G4ITType.hh for linker problems on Windows
363 267
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) 268 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03)
365 - Prefer pointer to `const G4Material` if poss 269 - Prefer pointer to `const G4Material` if possible
366 270
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) 271 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02)
368 - Remove useless `const_cast` of `G4VSensitive 272 - Remove useless `const_cast` of `G4VSensitiveDetector`
369 273
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) 274 ## 2021-12-23 Hoang Tran (emdna-V11-00-01)
371 - add G4DNAPolyNucleotideReactionProcess, G4VD 275 - add G4DNAPolyNucleotideReactionProcess, G4VDNAHitModel
372 files for DNA damage applications 276 files for DNA damage applications
373 277
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) 278 ## 2021-12-10 Ben Morgan (emdna-V11-00-00)
375 - Change to new Markdown History format 279 - Change to new Markdown History format
376 280
377 --- 281 ---
378 282
379 # History entries prior to 11.0 283 # History entries prior to 11.0
380 284
381 8-11-2021, H. Tran, emdna-V10-07-15 285 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 286 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 287 - corrected the problem in IRT
384 288
385 4-11-2021, H. Tran, emdna-V10-07-14 289 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 290 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 291 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 292 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 293 Added new mesoscopic model for dna chemistry
390 294
391 21-10-2021, W.G.Shin, emdna-V10-07-13 295 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 296 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 297 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 298 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 299 G4DNAMolecularReactionTable
396 300
397 23-09-2021, A. Ribon, emdna-V10-07-12 301 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 302 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 303 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 304 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 305 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 306 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 307 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 308
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 309 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 310 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 311 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 312
409 16-07-2021, D. Sakata, emdna-V10-07-10 313 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 314 - Fixed initialization error in G4DNAELSEPAElasticModel
411 315
412 28-06-2021, G. Cosmo, emdna-V10-07-09 316 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 317 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 318 enabled.
415 319
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 320 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 321 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 322 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 323 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 324 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 325 - Modified G4DNAELSEPAElasticModel for gold
422 326
423 9-05-2021, H.Tran, tag emdna-V10-07-07 327 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 328 - Add IRT-syn model
425 329
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 330 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 331 - Migrate build to modular CMake API
428 332
429 27-04-2021, H.Tran, tag emdna-V10-07-05 333 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 334 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 335 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 336 - added OctreeFinder and IRTUtils
433 337
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 338 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 339 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 340
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 341 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 342 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 343
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 344 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 345 - Fixed dependency on g4tools, now moved to externals module.
442 346
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 347 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 348 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 349 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 350 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 351 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 352 Added the fragment displacement for new dissociation channel
449 353
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 354 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 355 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 356 help resolving observed crashes in MT runs.
453 Some code cleanup. 357 Some code cleanup.
454 358
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 359 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 360 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 361 - History file fixed
458 362
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 363 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 364 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 365 in chem6 example - do not delete instance of the singleton
462 366
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 367 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 368 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 369 required after analysis update (analysis-V10-06-05)
466 370
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 371 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 372 - Fixed coverity warning
469 373
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 374 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 375 - Fixed coverity warnings
472 - Fix of IRT bug 376 - Fix of IRT bug
473 (protection for the crash induced by empty re 377 (protection for the crash induced by empty reaction set)
474 378
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 379 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 380 - Add missing G4analysismng module dependency to G4emdna-utils
477 381
478 20-05-20: W.G.Shin emdna-V10-06-05 382 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 383 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 384 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 385 - Added missing History
482 386
483 26-04-20: W.G.Shin emdna-V10-06-04 387 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 388 - Fixed coverity test
485 389
486 15-04-20: G.Cosmo emdna-V10-06-03 390 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 391 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 392 are not allowed (as for G4ParticleDefinition). Now deleted.
489 393
490 19-02-20: W.G.Shin emdna-V10-06-02 394 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 395 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 396 - Revised headeres of IRT classes
493 397
494 12-02-20: W.G.Shin emdna-V10-06-01 398 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 399 - Added protections floating point exception in G4DNAIRT class
496 400
497 10-01-20: W.G.Shin emdna-V10-06-00 401 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 402 - Added classes for IRT
499 - Added features in management classes for IRT 403 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 404 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 405 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 406 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 407
504 15-11-19: G.Cosmo emdna-V10-05-11 408 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 409 - Fixed cases of implicit type conversions from size_t to G4int.
506 410
507 8-11-19: HT, tag emdna-V10-05-10 411 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 412 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 413 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 414 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 415
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 416 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 417 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 418 of external physical volume (meant for adapting external navigators)
515 419
516 19-10-19: WGS, SI, tag emdna-V10-05-08 420 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 421 - Added new model G4DNAELSEPAElasticModel
518 422
519 11-10-19: WGS, SI, tag emdna-V10-05-07 423 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 424 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 425 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 426 - G4DNAWaterDissociationDisplacer* : updated
523 427
524 03-06-2019, MK, tag emdna-V10-05-06 428 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 429 - Fix GCC9 warnings
526 430
527 26-03-2019, HT, tag emdna-V10-05-05 431 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 432 - Added G4DNAMolecule
529 433
530 10-03-2019, MK, tag emdna-V10-05-04 434 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 435 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 436 - Chemistry: clarify pointer ownership, clean code
533 437
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 438 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 439 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 440 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 441
538 18-01-2019, HT, tag emdna-V10-05-02 442 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 443 - Transformed the exception into warning in G4DNAMolecularDissociation
540 444
541 28-12-2018, MK, tag emdna-V10-05-01 445 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 446 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 447
544 05-01-2019, HT, tag emdna-V10-05-00 448 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 449 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 450 in G4ITStepProcessor::SetInitialStep()
547 451
548 01-09-2018, SI, tag emdna-V10-04-10 452 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 453 renamed tag
550 454
551 01-09-2018, SI, tag emdna-v10-04-09 455 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 456 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 457 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 458
555 30-07-2018, SI, tag emdna-V10-04-08 459 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 460 - included upper energy limit of models (2)
557 461
558 29-07-2018, SI, tag emdna-V10-04-07 462 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 463 - included upper energy limit of models
560 464
561 01-07-2018, SI, tag emdna-V10-04-06 465 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 466 - added protection in Auger emission
563 467
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 468 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 469 - updated Si mass in G4DNAGenericIonsManager
566 470
567 22-06-2018, SI tag emdna-V10-04-04 471 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 472 - fixed warnings in lepts models
569 473
570 14-05-2018, SI tag emdna-V10-04-03 474 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 475 - chemistry update by Mathieu
572 476
573 01-05-2018, SI tag emdna-V10-04-02 477 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 478 - chemistry update by Mathieu
575 479
576 09-02-2018, M.Asai tag emdna-V10-04-01 480 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 481 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 482 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 483 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 484 - Co-works with run-V10-04-01 and global-V10-04-01.
581 485
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 486 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 487 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 488 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 489 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 490 Thanks to Raphael Isemann for reporting these.
587 491
588 01-11-2017, MK tag emdna-V10-03-30 492 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 493 - remove models/test directory
590 494
591 31-10-2017, JA ( tag missing ) 495 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 496 - G4KDNode.hh: Add missing included file - needed in test
593 497
594 16-08-2017, SI tag emdna-V10-03-28 498 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 499 - updated variable types in models
596 500
597 10-08-2017, SI tag emdna-V10-03-27 501 10-08-2017, SI tag emdna-V10-03-27
598 - test 502 - test
599 503
600 10-08-2017, SI tag emdna-V10-03-26 504 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 505 - same as previous
602 506
603 09-08-2017, SI tag emdna-V10-03-25 507 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 508 - same as previous
605 509
606 09-08-2017, SI tag emdna-V10-03-24 510 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 511 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 512
609 03-08-2017, VI tag emdna-V10-03-23 513 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 514 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 515
612 28-07-2017, SI, tag emdna-V10-03-22 516 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 517 - added stationary mode flag to CPA100 ionisation.
614 518
615 04-07-2017, SI, tag emdna-V10-03-21 519 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 520 - added tagging of atom. deexc. products in ionisation models.
617 521
618 31-05-2017, SM, tag emdna-V10-03-20 522 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 523 - Correct windows issues with path of diff. CS data file.
620 524
621 31-05-2017, SI, tag emdna-V10-03-19 525 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 526 - roll-back (Windows issues with previous tag)
623 527
624 24-05-2017, SI, tag emdna-V10-03-18 528 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 529 - added tagging of atom. deexc. products in ionisation models.
626 530
627 11-05-2017, VI tag emdna-V10-03-17 531 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 532 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 533
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 534 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 535 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 536
633 03-05-2017, SM, tag emdna-V10-03-15 537 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 538 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 539
636 27-04-2017, SM, tag emdna-V10-03-14 540 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 541 - correct small typo mistakes.
638 542
639 27-04-2017, SM, tag emdna-V10-03-13 543 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 544 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 545
642 10-03-2017, MK, tag emdna-V10-03-12 546 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 547 - update utils/GNUmakefile
644 548
645 13-02-2017, MK, tag emdna-V10-03-11 549 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 550 - G4DNAMolecularMaterial: update doxygen doc
647 551
648 13-02-2017, MK, tag emdna-V10-03-10 552 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 553 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 554 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 555 add doxygen documentation
652 556
653 10-02-2017, MK, tag emdna-V10-03-09 557 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 558 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 559 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 560 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 561 when G4ITTrackHolder::PushToKill is called.
658 562
659 09-02-2017, MK, tag emdna-V10-03-08 563 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 564 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 565 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 566 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 567 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 568 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 569
666 24-01-2017, SM, tag emdna-V10-03-07 570 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 571 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 572
669 23-01-2017, SM, tag emdna-V10-03-06 573 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 574 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 575
672 23-01-2017, SM CV, tag emdna-V10-03-05 576 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 577 - add new G4DNAPTB* classes and the structure of the new material management system
674 578
675 14-01-2017, MK, tag emdna-V10-02-37 579 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 580 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 581 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 582 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 583
680 28-12-2016, SI, tag emdna-V10-03-04 584 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 585 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 586 G4DNARuddIonisationExtendedModel
683 587
684 27-12-2016, SI, tag emdna-V10-03-03 588 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 589 - updated references of CPA100 classes
686 590
687 23-12-2016, SI, tag emdna-V10-03-02 591 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 592 - updated sources.cmake
689 593
690 23-12-2016, SI, tag emdna-V10-03-01 594 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 595 - commit of first CPA100 classes, part 2
692 596
693 21-12-2016, SI, tag emdna-V10-03-00 597 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 598 - commit of first CPA100 classes
695 599
696 27-11-2016, MK, tag emdna-V10-02-36 600 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 601 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 602 - G4DNADamages -> G4DNADamage
699 603
700 17-11-2016, MK, tag emdna-V10-02-35 604 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 605 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 606
703 16-11-2016, MK, tag emdna-V10-02-34 607 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 608 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 609 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 610 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 611 G4VTrackStateID::Create() to cc file - windows crash
708 612
709 15-11-2016, MK, tag emdna-V10-02-33 613 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 614 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 615
712 14-11-2016, MK, tag emdna-V10-02-32 616 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 617 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 618 windows platforms
715 619
716 14-11-2016, MK, tag emdna-V10-02-31 620 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 621 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 622 tag init constexpr factor with number rather than expression
719 623
720 14-11-2016, MK, tag emdna-V10-02-30 624 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 625 - Use CLHEP::pi instead of M_PI
722 626
723 14-11-2016, MK, tag emdna-V10-02-29 627 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 628 - Correct bracket enclosing
725 629
726 14-11-2016, MK, tag emdna-V10-02-28 630 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 631 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 632 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 633 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 634 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 635 - Adds and use G4CTCounter
732 636
733 02-11-2016, MK, tag emdna-V10-02-27 637 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 638 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 639 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 640 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 641 computeStep & computeSafety
738 642
739 07-08-2016, SI, tag emdna-V10-02-26 643 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 644 - added stationnary mode to sub-excitation electron processes
741 645
742 23-06-2016, MK 646 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 647 - G4Scheduler: move G4IosFlagsSaver to Process()
744 648
745 3-06-2016, MK, tag emdna-V10-02-25 649 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 650 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 651 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 652 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 653
750 3-06-2016, MK, tag emdna-V10-02-24 654 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 655 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 656 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 657 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 658 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 659 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 660 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 661 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 662 model used for another part than e-
759 663
760 1-06-2016, MK, tag emdna-V10-02-23 664 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 665 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 666 logic for interface with physics models
763 667
764 31-05-2016, MK, tag emdna-V10-02-22 668 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 669 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 670
767 28-05-2016, MK, tag emdna-V10-02-21 671 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 672 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 673 one of the previous tags
770 674
771 19-05-2016, MK, tag emdna-V10-02-20 675 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 676 - G4ITNavigator: remove warnings on gcc6.1
773 677
774 17-05-2016, MK, tag emdna-V10-02-19 678 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 679 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 680 correct model and process names for solvation
777 681
778 12-05-2016, MK, tag emdna-V10-02-18 682 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 683 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 684 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 685 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 686 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 687 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 688 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 689 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 690 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 691 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 692 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 693 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 694 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 695 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 696 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 697 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 698 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 699 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 700 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 701 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 702 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 703 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 704 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 705 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 706 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 707 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 708 created; otherwise, the primary electron is killed
805 709
806 30-04-2016, MK, tag emdna-V10-02-17 710 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 711 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 712
809 30-04-2016, MK, tag emdna-V10-02-16 713 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 714 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 715 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 716 unregistered molecule definition
813 717
814 22-04-2016, MK, tag emdna-V10-02-15 718 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 719 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 720 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 721
818 22-04-2016, MK, tag emdna-V10-02-14 722 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 723 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 724 remove usage of internal energy boundaries
821 725
822 19-03-2016, SI, tag emdna-V10-02-13 726 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 727 - added nrj extensibility to SR and USR models
824 728
825 11-03-2016, SI, tag emdna-V10-02-12 729 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 730 -roll back to files in emdna-V10-02-06
827 731
828 10-03-2016, SI, tag emdna-V10-02-11 732 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 733 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 734 and G4DNAScreenedRutherfordElasticModel
831 735
832 10-03-2016, SI, tag emdna-V10-02-10 736 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 737 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 738
835 07-03-2016, SI, tag emdna-V10-02-09 739 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 740 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 741 of G4DNAUeharaScreenedRutherfordElasticModel
838 742
839 06-03-2016, SI, tag emdna-V10-02-08 743 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 744 -removed useless G4Pow declaration
841 745
842 04-03-2016, SI, tag emdna-V10-02-07 746 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 747 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 748 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 749
846 02-03-2016, SI, tag emdna-V10-02-06 750 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 751 -replaced std::exp by G4Exp
848 752
849 02-03-2016, SI, tag emdna-V10-02-05 753 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 754 -replaced std::exp by G4Exp
851 755
852 02-03-2016, SI, tag emdna-V10-02-04 756 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 757 -replaced std::exp by G4Exp
854 758
855 01-03-2016, SI, tag emdna-V10-02-03 759 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 760 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 761 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 762 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 763 by S. Okada (KEK, JP)
860 764
861 17-02-2016, MK, tag emdna-V10-02-02 765 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 766 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 767
864 16-12-2015, SI, tag emdna-V10-02-01 768 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 769 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 770 added protection on energy for interpolation method change
867 771
868 16-12-2015, SI, tag emdna-V10-02-00 772 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 773 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 774 energy
871 775
872 13-11-2015, MK, tag emdna-V10-01-55 776 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 777 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 778 file
875 779
876 10-11-2015, MK, tag emdna-V10-01-54 780 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 781 * remove unused variables
878 782
879 10-11-2015, MK, tag emdna-V10-01-53 783 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 784 * Coverity fixes
881 785
882 06-11-2015, MK, tag emdna-V10-01-52 786 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 787 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 788
885 06-11-2015, MK, tag emdna-V10-01-51 789 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 790 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 791 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 792
889 06-11-2015, MK, tag emdna-V10-01-50 793 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 794 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 795 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 796 * Add G4ITStepProcessorState_Lock.hh
893 797
894 06-11-2015, MK, tag emdna-V10-01-49 798 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 799 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 800 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 801 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 802 but in the source file - causing crashes on windows
899 803
900 04-11-2015, MK, tag emdna-V10-01-48 804 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 805 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 806 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 807 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 808 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 809 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 810 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 811 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 812 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 813 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 814 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 815 all dissociation products have been defined (they will just not be taken
912 into account) 816 into account)
913 * G4DNAMolecularReactionTable: delete reaction 817 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 818
915 03-11-2015, MK, tag emdna-V10-01-47 819 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 820 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 821 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 822 the call
919 823
920 03-11-2015, MK, tag emdna-V10-01-46 824 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 825 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 826 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 827 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 828 (causing navigator complains)
925 829
926 03-11-2015, MK, tag emdna-V10-01-45 830 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 831 * G4Serialize: Add definition in header for G4String
928 832
929 02-11-2015, MK, tag emdna-V10-01-44 833 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 834 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 835 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 836 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 837 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 838 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 839 -> G4MolecularConfMan is taking care of this
936 840
937 30-10-2015, MK, tag emdna-V10-01-43 841 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 842 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 843 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 844 * Unit tests corrected
941 * G4VITDiscreteProcess added 845 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 846 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 847 * Intermediate update for 10.2 release
944 848
945 27-10-2015, MK, tag emdna-V10-01-42 849 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 850 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 851
948 26-10-2015, MK, tag emdna-V10-01-41 852 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 853 * Sanche model: try to solve std::vector out of bounds
950 854
951 23-10-2015, MK, tag emdna-V10-01-40 855 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 856 * remove all CLHEP::shared_ptr usage
953 857
954 23-10-2015, CV, SM, tag emdna-V10-01-39 858 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 859 * Addded base class G4VDNAPTBModel
956 860
957 28-09-2015, SI, tag emdna-V10-01-38 861 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 862 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 863
960 19-09-2015, MK, tag emdna-V10-01-37 864 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 865 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 866 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 867
964 17-09-2015, MK, tag emdna-V10-01-36 868 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 869 * G4MoleculeGun: Remove compilation warnings
966 870
967 04-09-2015 MK, tag emdna-V10-01-35 871 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 872 * Fix G4MoleculeGun compilation errors
969 873
970 03-09-2015 SI, tag emdna-V10-01-34 874 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 875 * Added stationary regime to all inelastic models
972 876
973 19-08-2015, MK 877 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 878 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 879 - compatible with both Smoluchowski & Gillespie models
976 880
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 881 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 882 * Added easier handling of cumulative proba. in SR elastic models
979 883
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 884 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 885 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 886 declaration of G4MoleculeShoot.
983 887
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 888 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 889 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 890 declaration of G4MoleculeShootMessenger.
987 891
988 12-08-2015, MK, tag emdna-V10-01-29 892 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 893 * Add G4Serialize in the build tree temporarily
990 894
991 12-08-2015, MK, tag emdna-V10-01-28 895 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 896 * G4Serialize added
993 897
994 12-08-2015, MK 898 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 899 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 900
997 24-07-2015, MK 901 24-07-2015, MK
998 - G4MolecularReactionTable 902 - G4MolecularReactionTable
999 * Add get methods 903 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 904 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 905 * Molecule gun : place randomly in a box
1002 906
1003 15-07-2015, MK 907 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 908 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 909 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 910 * processes & models initialisation again
1007 911
1008 15-07-2015, MK, tag emdna-V10-01-26 912 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 913 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 914 * add macro to prevent warnings in non-verbose mode
1011 915
1012 11-07-2015, MK, tag emdna-V10-01-25 916 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 917 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 918 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 919
1016 10-07-2015, MK, tag emdna-V10-01-24 920 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 921 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 922 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 923 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 924 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 925
1022 08-07-2015, MK, tag emdna-V10-01-23 926 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 927 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 928 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 929 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 930 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 931 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 932 - G4MoleculeDefinition:
1029 ::SetFormatedName added 933 ::SetFormatedName added
1030 ::NewConfiguration methods added 934 ::NewConfiguration methods added
1031 ::NewConfiguration added 935 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 936 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 937 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 938 ::Finalize added
1035 - G4MolecularConfiguration: 939 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 940 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 941 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 942 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 943 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 944 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 945 than molecule models
1042 - G4Molecule add constructor where only G4Mol 946 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 947 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 948 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 949 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 950 - G4DNAElectronHoleRecombination added
1047 951
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 952 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 953 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 954 fasterCode usage on shell selection.
1051 955
1052 26-06-2015, MK 956 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 957 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 958 warning message description
1055 959
1056 16-06-205, MK 960 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 961 - Add G4Scheduler::GetGun()
1058 962
1059 16-06-2015, MK, tag emdna-V10-01-21 963 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 964 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 965 - G4DNAIonElasticModel: clean and fix double free
1062 966
1063 12-06-2015, MK, tag emdna-V10-01-20 967 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 968 - remove virtual keyword from G4IT::GetPosition()
1065 969
1066 04-06-2015, MK 970 04-06-2015, MK
1067 - just cosmetics 971 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 972 - remove virtual keyword from G4IT::operator[]
1069 973
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 974 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 975 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 976 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 977 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 978 - Fully qualify std::string elsewhere as needed to adjust
1075 979
1076 22-05-2015, John Allison, tag emdna-V10-01-18 980 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 981 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 982 "G4Threading::IsMasterThread()".
1079 983
1080 17-05-2015, MK, tag emdna-V10-01-17 984 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 985 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 986 - Correct sources.cmake
1083 - Born headears: includes both model versions 987 - Born headears: includes both model versions when proxy header is included
1084 988
1085 16-05-2015, MK, tag emdna-V10-01-16 989 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 990 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 991 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 992 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 993 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 994 - Add G4DNABornExcitationModel2 (temporary)
1091 995
1092 15-05-2015, MK, tag emdna-V10-01-15 996 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 997 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 998
1095 14-05-2015, MK, tag emdna-V10-01-14 999 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 1000 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 1001
1098 14-05-2015, MK, tag emdna-V10-01-13 1002 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 1003 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 1004 - G4ITReaction: try to solve compilation error
1101 1005
1102 12-05-2015, MK, tag emdna-V10-01-12 1006 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 1007 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 1008
1105 12-05-2015, MK, tag emdna-V10-01-11 1009 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 1010 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 1011
1108 11-05-2015, MK, tag emdna-V10-01-10 1012 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 1013 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 1014 +Add GetPartialCrossSection
1111 +Code cleaning 1015 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 1016 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 1017 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 1018 - G4DNAChemistryManager::GetValue(...) added
1115 1019
1116 02-05-2015, MK 1020 02-05-2015, MK
1117 - Update G4TrackState & related classes 1021 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 1022 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 1023 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 1024 +comment useless method
1121 - G4Scheduler: 1025 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 1026 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 1027 +remove fTmpEndTime
1124 +Add CanICarryOn 1028 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 1029 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 1030
1127 18-03-2015, MK, tag emdna-V10-01-08 1031 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 1032 - Same as before, just add the missing History file
1129 1033
1130 18-03-2015, MK, tag emdna-V10-01-07 1034 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 1035 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 1036 instead of a reference
1133 1037
1134 12-02-2015, MK, tag emdna-V10-01-06 1038 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 1039 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 1040 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 1041 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 1042
1139 11-02-2015, MK, tag emdna-V10-01-05 1043 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 1044 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 1045 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 1046 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 1047
1144 16-01-2015, SI, tag emdna-V10-01-04 1048 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 1049 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 1050
1147 14-12-2014, MK, tag emdna-V10-01-03 1051 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 1052 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 1053 - ScreenRutherfordElastic: correct retrieval of water density
1150 1054
1151 13-12-2014, SI, tag emdna-V10-01-02 1055 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 1056 - Added elastic model by H. Tran.
1153 1057
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 1058 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 1059 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 1060 to allow for compilation on Linux/clang-3.5.
1157 1061
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 1062 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 1063 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 1064 include missing files:
1161 G4ITTransportationManager.icc 1065 G4ITTransportationManager.icc
1162 G4KDNode.icc 1066 G4KDNode.icc
1163 G4KDTree.icc 1067 G4KDTree.icc
1164 G4MoleculeFinder.hh 1068 G4MoleculeFinder.hh
1165 1069
1166 01-12-2014, MK, tag emdna-V10-00-63 1070 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 1071 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 1072 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 1073 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 1074 when the particle has reached a boundary
1171 1075
1172 28-11-2014, MK, tag emdna-V10-00-62 1076 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 1077 - Retag
1174 1078
1175 28-11-2014, MK, tag emdna-V10-00-61 1079 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 1080 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 1081 - Fix Brownian navigation
1178 - Some fixes related to scheduler 1082 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 1083 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 1084 - Enhance comments
1181 1085
1182 24-11-2014, MK, tag emdna-V10-00-60 1086 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 1087 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 1088
1185 24-11-2014, MK, tag emdna-V10-00-59 1089 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 1090 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 1091 - Remove useless verbose
1188 - Try to compile on all platforms 1092 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 1093 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 1094 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 1095 Just registering constructor is enough to initialized the chemistry
1192 1096
1193 24-11-2014, MK, tag emdna-V10-00-58 1097 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 1098 - G4FastList: remove all friend declarations
1195 1099
1196 22-11-2014, MK, tag emdna-V10-00-57 1100 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 1101 - Another attempt to compile G4FastList on all platforms
1198 1102
1199 22-11-2014, MK, tag emdna-V10-00-56 1103 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 1104 - Attempt to compile G4FastList on all platforms
1201 1105
1202 21-11-2014, MK, tag emdna-V10-00-55 1106 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 1107 - Attempt to compile G4FastList with clang
1204 1108
1205 21-11-2014, MK, tag emdna-V10-00-54 1109 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 1110 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 1111 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 1112 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 1113 - Update G4ITNavigator2 to the G4Navigator of John
1210 1114
1211 21-11-2014, MK, tag emdna-V10-00-53 1115 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 1116 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 1117 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 1118 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 1119 is false by default --> uses the random time computation for crossing
1216 boundaries 1120 boundaries
1217 1121
1218 20-11-2014, SI, tag emdna-V10-00-52 1122 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 1123 - Improved error message for missing data in PW elastic model
1220 1124
1221 08-11-2014, MK, tag emdna-V10-00-51 1125 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 1126 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 1127 when the asked item is not found
1224 1128
1225 03-11-2014 MK, tag emdna-V10-00-50 1129 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 1130 - correct track creation by G4MoleculeGunMessenger
1227 1131
1228 03-11-2014 MK, tag emdna-V10-00-49 1132 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 1133 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 1134 - Correct a bug in G4MoleculeGun
1231 1135
1232 28-10-2014 PA, tag emdna-V10-00-48 1136 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 1137 - correct compilation warnings
1234 1138
1235 28-10-2014 PA, tag emdna-V10-00-47 1139 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 1140 - correct compilation warnings
1237 1141
1238 28-10-2014 PA, tag emdna-V10-00-46 1142 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 1143 - correction in sources.cmake
1240 1144
1241 28-10-2014 PA, tag emdna-V10-00-45 1145 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 1146 - retag to add LEPTS
1243 1147
1244 28-10-2014 PA, tag emdna-V10-00-44 1148 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 1149 - add LEPTS
1246 1150
1247 25-10-2014 MK, tag emdna-V10-00-43 1151 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 1152 - remove useless G4VITScheduler
1249 1153
1250 25-10-2014 MK, tag emdna-V10-00-42 1154 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 1155 - correct warnings
1252 1156
1253 24-10-2014 MK, tag emdna-V10-00-41 1157 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 1158 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 1159 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 1160 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 1161 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 1162 - G4ITFinder added
1259 - G4VITTrackHolder added 1163 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 1164 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 1165 - code cleaned + useless classes removed
1262 1166
1263 24-10-2014 MK, tag emdna-V10-00-40 1167 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 1168 - G4ITStepManager: remove verbose at closure time
1265 1169
1266 21-10-2014 MK, tag emdna-V10-00-39 1170 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 1171 - try to solve crash at closure time
1268 1172
1269 21-10-2014 MK, tag emdna-V10-00-38 1173 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 1174 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 1175 table when deleted
1272 - update disclaimer 1176 - update disclaimer
1273 1177
1274 17-10-2014 MK, tag emdna-V10-00-37 1178 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 1179 - clean code
1276 - G4ITStepManager: one can ask why simulation 1180 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 1181 - remove useless verbose
1278 1182
1279 17-10-2014 MK, tag emdna-V10-00-36 1183 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 1184 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 1185 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 1186 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 1187
1284 10-10-2014 MK, tag emdna-V10-00-35 1188 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 1189 Avoid use of std::map at the application level in TimeStepAction
1286 1190
1287 07-10-2014 MK, tag emdna-V10-00-34 1191 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 1192 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 1193 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 1194 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 1195
1292 07-10-2014 MK, tag emdna-V10-00-33 1196 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 1197 Initialize G4ITStepManager in G4DNAChemistryManager
1294 1198
1295 17-09-2014 MK, tag emdna-V10-00-32 1199 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 1200 Add G4ITStepManager + messenger
1297 Tag before architecture change 1201 Tag before architecture change
1298 1202
1299 12-07-2014 SI, tag emdna-V10-00-31 1203 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 1204 Removed obsolete class for electron excitation
1301 1205
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 1206 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 1207 - Get rid of obsolete 'register' keyword in code.
1304 1208
1305 05-06-2014 SI, tag emdna-V10-00-29 1209 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 1210 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 1211 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 1212 G4GenericIon usage
1309 - requires G4EMLOW6.39 1213 - requires G4EMLOW6.39
1310 1214
1311 04-06-2014 MK, tag emdna-V10-00-28 1215 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 1216 Remove directory management/include/impl
1313 Prepare for release 1217 Prepare for release
1314 1218
1315 04-06-2014 MK, tag emdna-V10-00-27 1219 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 1220 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 1221 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 1222 Avoid usage of molecule iterators as pointers
1319 1223
1320 03-06-2014 SI, tag emdna-V10-00-26 1224 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 1225 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 1226
1323 28-05-2014 VI, SI tag emdna-V10-00-25 1227 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 1228 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 1229 Ionisation models switch to use angular generator
1326 interface 1230 interface
1327 1231
1328 12.05.2014 MK, tag emdna-V10-00-24 1232 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 1233 Try to remove warnings 4
1330 1234
1331 12.05.2014 MK, tag emdna-V10-00-23 1235 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 1236 Try to remove warnings 3
1333 1237
1334 12.05.2014 MK, tag emdna-V10-00-22 1238 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 1239 Try to remove warnings 2
1336 1240
1337 12.05.2014 MK, tag emdna-V10-00-21 1241 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 1242 Try to remove warnings
1339 1243
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 1244 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 1245 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 1246 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 1247 G4EMLOW6.38 needed
1344 1248
1345 07-04-2014 SI tag emdna-V10-00-19 1249 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 1250 Changed faster method interpolation in
1347 G4DNABornIonisationModel 1251 G4DNABornIonisationModel
1348 1252
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 1253 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 1254 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 1255 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 1256 Corrected order of inclusion of some headers and use of <>/"".
1353 1257
1354 04-04-2014 MK tag emdna-V10-00-17 1258 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 1259 Try to solve warnings when G4VERBOSE is off
1356 1260
1357 02-04-2014 MK tag emdna-V10 1261 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 1262 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 1263
1360 02-04-2014 MK tag emdna-V10 1264 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 1265 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 1266
1363 02-04-2014 MK tag emdna-V10 1267 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1268 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1269 -> this part is withdrawn for now
1366 1270
1367 02-04-2014 MK tag emdna-V10 1271 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1272 - version 2 : try fixing the build error on mac
1369 1273
1370 02-04-2014 MK tag emdna-V10 1274 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1275 - version 1 : try to fix build errors and warnings on mac
1372 1276
1373 02-04-2014 MK tag emdna-V10 1277 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1278 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1279 (G4MemStat & G4MolecularConfiguration)
1376 1280
1377 02-04-2014 MK tag emdna-V10 1281 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1282 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1283 (problem coming from having as a friend class a template argument)
1380 1284
1381 02-04-2014 MK tag emdna-V10 1285 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1286 - try to fix build error on windows platform
1383 1287
1384 01-04-2014 MK tag emdna-V10 1288 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1289 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1290 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1291
1388 01-04-2014 MK tag emdna-V10 1292 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1293 - reset CMakeLists.txt
1390 1294
1391 01-04-2014 MK tag emdna-V10 1295 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1296 - update chemistry
1393 1297
1394 01-04-2014 SI tag emdna-V10-00-05 1298 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1299 - Modified calculation of secondary kinetic for fast code
1396 1300
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1301 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1302 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1303 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1304 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1305
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1306 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1307 - Added several clear() to vectors for MT
1404 1308
1405 17-03-2014 SI tag emdna-V10-00-02 1309 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1310 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1311 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1312 to be used with G4EMLOW6.36
1409 1313
1410 12-12-2013 M.K tag emdna-V10-00-01 1314 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1315 - G4DNAMolecularMaterial: Remove unused variable
1412 1316
1413 12-12-2013 M.K tag emdna-V10-00-00 1317 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1318 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1319 a model is not created at initialisation time
1416 1320
1417 21-11-2013 V.I. tag emdna-V09-06-22 1321 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1322 - G4ITStepProcessor2 - removed obsolete unused header
1419 1323
1420 01-11-2013 M.K tag emdna-V09-06-21 1324 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1325 - Correct incorrect singleton check introduced in previous tag
1422 1326
1423 01-11-2013 M.K tag emdna-V09-06-20 1327 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1328 - Prepare for release bis
1425 1329
1426 01-11-2013 M.K tag emdna-V09-06-19 1330 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1331 - Prepare for release
1428 1332
1429 10-10-2013 M.K. tag emdna-V09-06-18 1333 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1334 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1335
1432 06-10-2013 M.K. tag emdna-V09-06-17 1336 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1337 - Same as before once again
1434 1338
1435 03-10-2013 M.K. tag emdna-V09-06-16 1339 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1340 - Same as before
1437 1341
1438 03-10-2013 M.K. tag emdna-V09-06-15 1342 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1343 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1344 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1345 by the user - stage 1
1442 1346
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1347 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1348 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1349 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1350 with virtual keyword in G4VITProcess.
1447 1351
1448 12-09-2013 M.K. tag emdna-V09-06-13 1352 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1353 Correction of an inadvertent modification introduced in previous tag
1450 1354
1451 12-09-2013 M.K. tag emdna-V09-06-12 1355 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1356 Correct bound checks in G4ITManager.icc
1453 1357
1454 16-08-2013 S.I. tag emdna-V09-06-11 1358 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1359 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1360
1457 16-08-2013 S.I. tag emdna-V09-06-10 1361 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1362 Added G4DNAIons
1459 1363
1460 25-06-2013 M.K. tag emdna-V09-06-09 1364 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1365 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1366 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1367 auto_ptr according to c++ std version
1464 1368
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1369 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1370 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1371 for problem accidentally introduced in previous tag.
1468 1372
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1373 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1374 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1375 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1376 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1377 compilation on Windows.
1474 1378
1475 06-06-2013 S.I. tag emdna-V09-06- 1379 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1380 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1381 Requires G4EMLOW version 6.33
1478 1382
1479 25-05-2013 M.K. tag emdna-V09-06- 1383 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1384 *Fix warning compilation in G4KDMap for specific gcc version
1481 1385
1482 24-05-2013 M.K. tag emdna-V09-06- 1386 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1387 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1388 but still not in usage
1485 1389
1486 23-05-2013 M.K. tag emdna-V09-06- 1390 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1391 * G4KDMap : try fix error on std:ceil call on windows
1488 1392
1489 23-V09-06-03-05-2013 M.K. tag emd 1393 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1394 * G4KDMap : used deque::iterator
1491 1395
1492 1396
1493 22-05-2013 M.K. tag emdna-V09-06- 1397 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1398 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1399 * G4KDMap : pop out elements from map
1496 1400
1497 22-05-2013 M.K. tag emdna-V09-06-00 1401 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1402 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1403 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1404 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1405 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1406 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1407 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1408 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1409 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1410 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1411
1508 12-11-2012 M.K tag emdna-V09-05- 1412 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1413 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1414 coverity warnings (rev 64993)
1511 1415
1512 06-11-2012 G.Cosmo tag emdna-V09 1416 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1417 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1418 for objects in maps...
1515 1419
1516 04-11-2012 M.K. tag emdna-V09-05-33 1420 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1421 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1422 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1423 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1424 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1425 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1426 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1427 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1428 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1429 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1430 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1431 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1432 add "else" before "if" statements and
1529 add variables to avoid ma 1433 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1434 dna.files : update files (rev 64725)
1531 1435
1532 03-11-2012 S.I. tag emdna-V09-05-32 1436 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1437 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1438 classes
1535 1439
1536 24-10-2012 M.K tag emdna-V09 1440 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1441 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1442 (previously commented)
1539 1443
1540 23-10-2012 M.K tag emdna-V09 1444 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1445 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1446 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1447
1544 18-10-2012 M.K tag emdna-V09 1448 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1449 Previous tag did not include history changes
1546 1450
1547 18-10-2012 M.K tag emdna-V09 1451 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1452 Remove warning
1549 1453
1550 17-10-2012 M.K tag emdna-V09 1454 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1455 Correct a typo from previous tag
1552 1456
1553 17-10-2012 M.K tag emdna-V09 1457 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1458 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1459 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1460 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1461
1558 01-10-2012 SI, P.Pater tag emdna-V09 1462 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1463 Force kinetic energy to zero for real killings in models.
1560 1464
1561 12-07-2012 G.Cosmo tag emdna-V09 1465 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1466 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1467 constants, in plan to remove implicit inclusion from globals.hh.
1564 1468
1565 11.07.2012 M.K tag emdna-V09 1469 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1470 Correct warnings introduce in previous tag
1567 1471
1568 11.07.2012 M.K tag emdna-V09 1472 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1473 Tag to be proposed
1570 1474
1571 25.06.2012 M.K tag emdna-V09-05-21 1475 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1476 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1477 Modify molecule's name
1574 1478
1575 21.06.2012 S.I tag emdna-V09-05-20 1479 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1480 Update of electron elastic scattering low limit
1577 1481
1578 09.06.2012 M.K tag emdna-V09-05-19 1482 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1483 Fixed shadowing
1580 1484
1581 04.06.2012 M.K tag emdna-V09-05-18 1485 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1486 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1487
1584 24.05.2012 M.K tag emdna-V09-05-17 1488 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1489 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1490
1587 23.05.2012 M.K tag emdna-V09-05-16 1491 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1492 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1493 G4ITStepManager
1590 Prevent call of destructor of G4I 1494 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1495 G4DNAChemistryManager
1592 1496
1593 23.05.2012 M.K tag emdna-V09-05-15 1497 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1498 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1499 when one of its methods is called using a material that is
1596 not defined as a molecule 1500 not defined as a molecule
1597 1501
1598 21.05.2012 M.K tag emdna-V09-05-14 1502 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1503 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1504 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1505 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1506 Modify all models to use G4DNAMolecularMaterial
1603 1507
1604 14.05.2012 M.K tag emdna-V09-05-13 1508 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1509 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1510 Add G4DNADamages
1607 1511
1608 10.05.2012 M.K tag emdna-V09-05-12 1512 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1513 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1514 from UserReactionAction::EndProcessing()
1611 1515
1612 08.05.2012 M.K tag emdna-V09-05-11 1516 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1517 Use inverseErf from CLHEP
1614 1518
1615 03.05.2012 M.K tag emdna-V09-05-10 1519 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1520 Add erfc function for windows compilator (VC++)
1617 1521
1618 03.05.2012 M.K tag emdna-V09-05-09 1522 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1523 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1524
1621 03.05.2012 M.K tag emdna-V09-05-08 1525 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1526 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1527 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1528 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1529 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1530 Reset() at the end of G4ITStepManager::Process()
1627 1531
1628 30.03.2012 M.K tag emdna-V09-05-07 1532 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1533 Same as emdna-V09-05-06
1630 1534
1631 30.03.2012 M.K tag emdna-V09-05-06 1535 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1536 1) Add separate navigator for synchronous tracking
1633 New classes : 1537 New classes :
1634 * G4ITTransportationManager 1538 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1539 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1540 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1541 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1542 3) Solve bugs with normal and brownian ITTransportation
1639 1543
1640 14.03.2012 M.K tag emdna-V09-05-05 1544 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1545 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1546 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1547 -> become size_t + related changes
1644 * when a poststep process propo 1548 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1549 => considered as a time, and transportation::computestep
1646 is used 1550 is used
1647 1551
1648 14.03.2012 M.K tag emdna-V09-05-04 1552 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1553 Fix compilation warning
1650 1554
1651 14.03.2012 M.K tag emdna-V09-05-03 1555 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1556 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1557 Fix coverity warnings
1654 1558
1655 18.01.2012 S.I. tag emdna-V09 1559 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1560 Removal of G4Water* classes in utils
1657 1561
1658 11.01.2012 M.K tag emdna-V09 1562 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1563 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1564 concerning the final position of the solvated electron
1661 using Sanche thermalization 1565 using Sanche thermalization
1662 1566
1663 16.12.2011 S.I tag emdna-V09 1567 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1568 Updated source of cross section file for elastic scattering
1665 1569
1666 25.11.2011 M.K tag emdna-V09 1570 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1571 Correct a typo in previous tag
1668 1572
1669 25.11.2011 M.K tag emdna-V09 1573 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1574 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1575 rather than center of mass in DNAMolecularReaction
1672 1576
1673 21.11.2011 M.K tag emdna-V09 1577 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1578 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1579 avoid conflicts with ROOT.
1676 Add short class description (comm 1580 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1581 in JavaDoc style for doxygen use.
1678 1582
1679 21.11.2011 M.K tag emdna-V09 1583 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1584 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1585 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1586 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1587 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1588 when the time steps returned by the time stepper
1685 and the processes are equal 1589 and the processes are equal
1686 Improve verbose 1590 Improve verbose
1687 1591
1688 21.11.2011 M.K tag emdna-V09 1592 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1593 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1594 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1595 Correct verbose in new models & process
1692 1596
1693 18.11.2011 M.K tag emdna-V09 1597 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1598 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1599 in G4DNAChemistryManager
1696 1600
1697 18.11.2011 M.K tag emdna-V09 1601 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1602 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1603 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1604 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1605
1702 15.11.2011 G.Cosmo tag emdna-V09 1606 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1607 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1608 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1609 Windows.
1706 Fixed compilation warning on icc 1610 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1611 G4MolecularDecayTable.cc
1708 1612
1709 10.11.2011 M.K. tag emdna-V09 1613 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1614 Fix a bug in G4DNATransformElectronModel
1711 1615
1712 10.11.2011 M.K. tag emdna-V09 1616 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1617 Clean classes for release
1714 Add comment into source 1618 Add comment into source
1715 Change name of some methods 1619 Change name of some methods
1716 Transform two independent singlet 1620 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1621 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1622 (ITStepMan + DNAChemMan)
1719 1623
1720 10.11.2011 M.K. tag emdna-V09 1624 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1625 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1626 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1627 the chemistryManager.
1724 1628
1725 09.11.2011 M.K. tag emdna-V09 1629 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1630 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1631 in G4TrackListNode.
1728 Simplify and improve the use of d 1632 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1633 Add more convenient methods in userReactionAction
1730 1634
1731 08.11.2011 M.K. tag emdna-V09 1635 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1636 Fix coverity warnings
1733 1637
1734 07.11.2011 M.K. tag emdna-V09 1638 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1639 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1640 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1641 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1642 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1643 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1644 Clean classes for release
1741 1645
1742 03.11.2011 M.K. tag emdna-V09 1646 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1647 Add dna libs in sources.cmake
1744 1648
1745 03.11.2011 M.K. tag emdna-V09 1649 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1650 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1651 Add dna includes in sources.cmake
1748 1652
1749 01.11.2011 M.K. tag emdna-V09 1653 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1654 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1655 G4ITTransportation, G4TrackList on Windows
1752 1656
1753 01.11.2011 G.Cosmo 1657 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1658 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1659 updated GNUMakefiles to have it properly defined.
1756 1660
1757 31.10.2011 M.K tag emdna-V09-04-35 1661 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1662 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1663 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1664 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1665 Fix windows compilation errors & warnings
1762 1666
1763 28.10.2011 M.K tag emdna-V09-04-34 1667 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1668 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1669 Plus remove obsolete G4Exception
1766 1670
1767 28.10.2011 M.K tag emdna-V09-04-33 1671 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1672 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1673 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1674 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1675 to models
1772 1676
1773 27.10.2011 M.K tag emdna-V09-04-32 1677 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1678 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1679 coverity errors.
1776 1680
1777 26.10.2011 M.K tag emdna-V09-04-31 1681 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1682 change std::shared_ptr to CLHEP::shared_ptr
1779 1683
1780 26.10.2011 M.K. tag emdna-V09-04-30 1684 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1685 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1686 G4MolecularConfiguration::fManager added
1783 1687
1784 26.10.2011 M.K. tag emdna-V09-04-29 1688 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1689 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1690 Add electron solvatation process & models
1787 Add chemical processes 1691 Add chemical processes
1788 1692
1789 21.10.2011 M.K. tag emdna-V09-04-28 1693 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1694 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1695 emdna-V09-04-24
1792 1696
1793 21.10.2011 M.K. tag emdna-V09-04-27 1697 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1698 CMake fixes from emdna-V09-04-24
1795 1699
1796 21.10.2011 M.K. tag emdna-V09-04-26 1700 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1701 Bug fixes and new dev from the previous tag
1798 1702
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1703 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1704 Extension of ionisation by HZE proposed by Z. Francis
1801 1705
1802 20.10.2011 M.K. tag emdna-V09-04-24 1706 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1707 Bug fixes and new dev from the previous tag
1804 1708
1805 07.10.2011 M.K. tag emdna-V09-04-23 1709 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1710 First tag with "molecules" files
1807 1711
1808 07.10.2011 M.K. tag emdna-V09-04-22 1712 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1713 Add molecules+management directory
1810 First tag with "management" files 1714 First tag with "management" files
1811 1715
1812 09.09.2011 G.Folger tag emdna-V09 1716 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1717 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1718 G4DNAMoleculeManager.cc
1815 1719
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1720 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1721 Updated sources.make and CMakeLists.txt
1818 1722
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1723 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1724 Reorganized whole architecture.
1821 1725
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1726 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1727 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1728 if no deexcitation)
1825 1729
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1730 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1731 Changed code (em0006) numbering for G4Exception
1828 1732
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1733 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1734 Switched to new G4Exception syntax
1831 1735
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1736 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1737 Added enhanced debug information in ionisation models
1834 1738
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1739 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1740 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1741
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1742 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1743 Removed obsolete information.
1840 1744
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1745 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1746 Updated deexcitation initialization in ionization models.
1843 1747
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1748 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1749 Coverity warnings removal
1846 1750
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1751 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1752 - Increased energy limits for
1849 G4DNAChargeIncrease 1753 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1754 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1755 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1756 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1757 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1758 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1759 of ionisation classes for Auger e-
1856 1760
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1761 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1762 Further compilation warnings removal
1859 1763
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1764 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1765 Compilation warnings removal
1862 1766
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1767 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1768 added Atomic Deexcitation to Ionisation Models
1865 1769
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1770 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1771 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1772 G4DNADingfelderChargeIncreaseModel.cc.
1869 1773
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1774 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1775 Changed process sub-type numbering.
1872 1776
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1777 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1778 Fixed coverity warnings.
1875 1779
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1780 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1781 Updated all models for handling of variable density.
1878 1782
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1783 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1784 Addition of dependencies to configuration files.
1881 1785
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1786 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1787 Addition of all files.
1884 1788
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1789 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1790 Creation of dna sub-package in electromagnetic category.