| Geant4 Cross Reference |
1 # Category emdna History 1 # Category emdna History
2 2
3 See `CONTRIBUTING.rst` for details of **requir 3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological 4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for wr 5 It must **not** be used as a substitute for writing good git commit messages!
6 6
7 ---------------------------------------------- 7 -------------------------------------------------------------------------------
8 8
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) << 9 ## 2023-07-12 Ben Morgan (emdna-V11-00-40)
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith 10 - Apply patch from [GitHub PR 58](https://github.com/Geant4/geant4/pull/58)
137 - Use std::erfc to avoid precision loss 11 - Use std::erfc to avoid precision loss
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 12
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 13 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-00-39)
204 - G4DNARuddIonisationExtendedModel - fixed com 14 - G4DNARuddIonisationExtendedModel - fixed common work between DNA physics and
205 radioactive decay module - before this upd << 15 radioactive decay module - before this update test2.in macro crash, because
206 only 5 ions have data needed for this mode 16 only 5 ions have data needed for this model; with this modification of the
207 model scaling relation to the carbon ion i 17 model scaling relation to the carbon ion is used for any ion, which has
208 no data; low-energy limit is used now more << 18 no data; low-energy limit is used now more correctly - all ions are stopped
209 but not killed, because they may have radi 19 but not killed, because they may have radioactive decay at rest; all commented
210 lines are removed from the class 20 lines are removed from the class
211 21
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) 22 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38)
213 - Fixed more compilation warnings for implicit 23 - Fixed more compilation warnings for implicit type conversions.
214 24
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) 25 ## 2022-11-22 Hoang Tran (emdna-V11-00-37)
216 - delete unused tests in dna (G4DNAProcessTest 26 - delete unused tests in dna (G4DNAProcessTest.cc and G4DNATest.cc)
217 27
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) 28 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36)
219 - Fixed compilation warnings for implicit type 29 - Fixed compilation warnings for implicit type conversions on macOS/XCode 14.1.
220 30
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 31 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-00-35)
222 - G4DNAUeharaScreenedRutherfordElasticModel - << 32 - G4DNAUeharaScreenedRutherfordElasticModel - code cleanup; introduced
223 low and high energy limit for the model; r 33 low and high energy limit for the model; removed missleading G4Exception
224 34
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) 35 ## 2022-11-01 Hoang Tran (emdna-V11-00-34)
226 - Fix Coverity issues for ref-09 36 - Fix Coverity issues for ref-09
227 37
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) 38 ## 2022-10-10 Hoang Tran (emdna-V11-00-33)
229 - minor correction of IRT-syn model (chemistry 39 - minor correction of IRT-syn model (chemistry). Contact reactions should not happen
230 after 1 ps. 40 after 1 ps.
231 41
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- 42 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna-V11-00-32)
233 - Add nitrogen models from PTra code 43 - Add nitrogen models from PTra code
234 44
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) 45 ## 2022-10-10 Hoang Tran (emdna-V11-00-31)
236 - Fixed minor mistake of file name in G4DNARPW 46 - Fixed minor mistake of file name in G4DNARPWBAIonisationModel,
237 - Added protection for HighEnergyLimit/LowEner 47 - Added protection for HighEnergyLimit/LowEnergyLimit in G4DNARPWBAIonisationModel and
238 G4DNARPWBAExcitationModel 48 G4DNARPWBAExcitationModel
239 49
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) 50 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30)
241 - Fixed compilation warnings on Intel/icx comp 51 - Fixed compilation warnings on Intel/icx compiler for variables set
242 but not used in G4ITNavigator2. 52 but not used in G4ITNavigator2.
243 53
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) 54 ## 2022-10-05 Hoang Tran (emdna-V11-00-29)
245 - Fix user's report for IRT model. 55 - Fix user's report for IRT model.
246 If the first IRTSampling won't give any rea 56 If the first IRTSampling won't give any reactions, end the simu. No StepProcessor in this simu
247 57
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) 58 ## 2022-10-03 Hoang Tran (emdna-V11-00-28)
249 - Fix Coverity static analysis for ref-08 59 - Fix Coverity static analysis for ref-08
250 uninit_member in G4DNAMillerGreenExcitationMo 60 uninit_member in G4DNAMillerGreenExcitationModel, G4DNARuddIonisationModel, G4DNADingfelderChargeDecreaseModel,
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI 61 G4DNADingfelderChargeIncreaseModel,G4DNARuddIonisationExtendedModel, G4DNAGillespieDirectMethod
252 Use auto & instead of auto : G4ITFinder, G4DN 62 Use auto & instead of auto : G4ITFinder, G4DNAScavengerMaterial, G4MoleculeCounter, G4OCTREE
253 63
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) 64 ## 2022-09-08 Hoang Tran (emdna-V11-00-27)
255 - Resolve dependency inconsistencies : 65 - Resolve dependency inconsistencies :
256 dna/management/include/G4ChemicalMoleculeF 66 dna/management/include/G4ChemicalMoleculeFinder.hh includes G4Molecule.hh from G4emdna-molman
257 dna/management/include/G4UserMeshAction.hh 67 dna/management/include/G4UserMeshAction.hh includes G4DNAMesh.hh from G4emdna-utils
258 dna/management/include/G4OctreeFinder.hh i 68 dna/management/include/G4OctreeFinder.hh includes G4IRTUtils.hh from G4emdna-utils
259 69
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) 70 ## 2022-09-05 Ben Morgan (emdna-V11-00-26)
261 - Partially resolve dependency inconsistencies 71 - Partially resolve dependency inconsistencies
262 - NB: cannot be resolved fully without intro 72 - NB: cannot be resolved fully without introducing a cycle between
263 G4emdna-man, G4emdna-molman, G4emdna-utils 73 G4emdna-man, G4emdna-molman, G4emdna-utils.
264 74
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) 75 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25)
266 - Define G4CT_MAX_COUNT for changing "compile 76 - Define G4CT_MAX_COUNT for changing "compile time counter" depth to fix build
267 errors on NVHPC compiler. 77 errors on NVHPC compiler.
268 78
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 79 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-00-24)
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo << 80 - G4DNAExcitation, G4DNAVibExcitation, G4DNARotExcitation - class
271 cleanup according to the recent G4VEmProce 81 cleanup according to the recent G4VEmProcess base class; model
272 headers are moved to source; C++11 keyward << 82 headers are moved to source; C++11 keywards are introduced.
273 83
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) 84 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23)
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela 85 - G4DNABornIonisationModel1.cc, G4DNACPA100ElasticModel.cc,
276 G4DNACPA100IonisationModel.cc, G4DNAChampion 86 G4DNACPA100IonisationModel.cc, G4DNAChampionElasticModel.cc,
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo 87 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglouIonisationModel.cc,
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx 88 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonExcitationModel.cc,
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis 89 G4DNARPWBAIonisationModel.cc, G4DNARelativisticIonisationModel.cc,
280 G4DNASancheExcitationModel.cc : 90 G4DNASancheExcitationModel.cc :
281 use G4FindDataDir("G4LEDATA") to find datase 91 use G4FindDataDir("G4LEDATA") to find dataset path on place of getenv.
282 92
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) 93 ## 2022-06-03 Hoang Tran (emdna-V11-00-22)
284 - correct DNA ion definitions in G4DNARuddIoni 94 - correct DNA ion definitions in G4DNARuddIonisationExtendedModel.
285 95
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) 96 ## 2022-06-01 Hoang Tran (emdna-V11-00-21)
287 - G4Octree : fixed Coverity warning. 97 - G4Octree : fixed Coverity warning.
288 98
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) 99 ## 2022-05-24 Hoang Tran (emdna-V11-00-20)
290 - update data structure to improve performance 100 - update data structure to improve performance of the mesoscopic model.
291 101
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) 102 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19)
293 - G4ITTransportation: fixed misuse of bitwise 103 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294 104
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) 105 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18)
296 - Added missing headers. 106 - Added missing headers.
297 107
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) 108 ## 2022-05-11 Hoang Tran (emdna-V11-00-17)
299 - change the scavenging filter of the IRT beyo 109 - change the scavenging filter of the IRT beyond 1 us proposed by Naoki and Jose
300 110
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) 111 ## 2022-05-02 Hoang Tran (emdna-V11-00-16)
302 - Add localthread for fUse of G4VMoleculeCount 112 - Add localthread for fUse of G4VMoleculeCounter
303 113
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa 114 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoang Tran (emdna-V11-00-15)
305 - Incorporation of model based on RPWBA to tra 115 - Incorporation of model based on RPWBA to transport protons at 100-300 MeV.
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI 116 - Added G4DNARPWBAExcitationModel, G4DNARPWBAIonisationModel.
307 117
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) 118 ## 2022-04-25 Hoang Tran (emdna-V11-00-14)
309 - add UserBrownianAction in G4DNABrownianTrans 119 - add UserBrownianAction in G4DNABrownianTransportation and
310 G4DNAMolecularDissociation 120 G4DNAMolecularDissociation
311 - replace G4int by int64_t for width integer t 121 - replace G4int by int64_t for width integer types
312 - add fResetScavenger in G4SchedulerMessenger 122 - add fResetScavenger in G4SchedulerMessenger
313 123
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) 124 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13)
315 - save local instances for recurrent access to << 125 - save local instances for recurrent access to particle definition in
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo 126 G4DNAMillerGreenExcitationModel, G4DNARuddIonisationExtendedModel and
317 G4DNARuddIonisationModel 127 G4DNARuddIonisationModel
318 - use G4Pow and G4Log instead of std::pow and 128 - use G4Pow and G4Log instead of std::pow and std::log
319 - inside G4DNARuddIonisationExtendedModel comm 129 - inside G4DNARuddIonisationExtendedModel commented out ions that are not
320 inside G4DNAGenericIonsManager 130 inside G4DNAGenericIonsManager
321 131
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) 132 ## 2022-04-14 Hoang Tran (emdna-V11-00-12)
323 - Debug the report #2235 which might be relate 133 - Debug the report #2235 which might be related to KDtree algorithm
324 - Clean code 134 - Clean code
325 - Delete G4ITFinder.cc 135 - Delete G4ITFinder.cc
326 136
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) 137 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11)
328 - save local instances for recurrent access to << 138 - save local instances for recurrent access to particle definition in
329 G4DNADingfelderChargeDecreaseModel and G4DNADi 139 G4DNADingfelderChargeDecreaseModel and G4DNADingfelderChargeIncreaseModel
330 - use G4Pow and G4Log instead of std::pow and 140 - use G4Pow and G4Log instead of std::pow and std::log
331 141
332 ## 2022-03-18 SI (emdna-V11-00-10) 142 ## 2022-03-18 SI (emdna-V11-00-10)
333 - add protection in G4DNACPA100IonisationModel 143 - add protection in G4DNACPA100IonisationModel for cum. xs interpolation
334 144
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) 145 ## 2022-03-15 Hoang Tran (emdna-V11-00-09)
336 - remove macro commands to control the chemist 146 - remove macro commands to control the chemistry models in G4SchedulerMessenger
337 (creating models in G4SchedulerMessenger can m 147 (creating models in G4SchedulerMessenger can make circular dependency problems)
338 - add flag OctreeFinder in IRT_syn's Initializ 148 - add flag OctreeFinder in IRT_syn's Initialize()
339 149
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) 150 ## 2022-03-04 Hoang Tran (emdna-V11-00-08)
341 - add macro commands to control the chemistry 151 - add macro commands to control the chemistry models,
342 parameters including the chemical molecules an 152 parameters including the chemical molecules and reaction list involved in the radiolysis
343 153
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) 154 ## 2022-02-18 Hoang Tran (emdna-V11-00-07)
345 - optimize IRT-syn model, use reaction radius 155 - optimize IRT-syn model, use reaction radius and reaction type from the reaction table
346 - delete G4VReactionType, G4DNAReactionTypeMan 156 - delete G4VReactionType, G4DNAReactionTypeManager, G4DNATotallyDiffusionControlled,
347 G4DNAPartiallyDiffusionControlled 157 G4DNAPartiallyDiffusionControlled
348 - delete G4DNAIRT_geomtries 158 - delete G4DNAIRT_geomtries
349 159
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) 160 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06)
351 - `G4ITTransportation`: Make `PrepareState` mo 161 - `G4ITTransportation`: Make `PrepareState` more function-like, expect semicolon
352 - `G4DNAPolyNucleotideReactionProcess`: 162 - `G4DNAPolyNucleotideReactionProcess`:
353 - Move `PrepareState` and `State` macros int 163 - Move `PrepareState` and `State` macros into `.cc` file
354 - Make `PrepareState` more function-like, ex 164 - Make `PrepareState` more function-like, expect semicolon
355 - Move variable `pMoleculeA` under `G4VERBOS 165 - Move variable `pMoleculeA` under `G4VERBOSE`
356 166
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) 167 ## 2022-02-10 Hoang Tran (emdna-V11-00-05)
358 - add the condition of water material for the 168 - add the condition of water material for the OUTSIDE_OF_MOTHER_VOLUME
359 warning in G4DNAMolecularDissociation::DecayIt 169 warning in G4DNAMolecularDissociation::DecayIt()
360 170
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) 171 ## 2022-02-3 Hoang Tran (emdna-V11-00-04)
362 - modify the macro in G4Molecule.cc and G4ITTy 172 - modify the macro in G4Molecule.cc and G4ITType.hh for linker problems on Windows
363 173
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) 174 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03)
365 - Prefer pointer to `const G4Material` if poss 175 - Prefer pointer to `const G4Material` if possible
366 176
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) 177 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02)
368 - Remove useless `const_cast` of `G4VSensitive 178 - Remove useless `const_cast` of `G4VSensitiveDetector`
369 179
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) 180 ## 2021-12-23 Hoang Tran (emdna-V11-00-01)
371 - add G4DNAPolyNucleotideReactionProcess, G4VD 181 - add G4DNAPolyNucleotideReactionProcess, G4VDNAHitModel
372 files for DNA damage applications 182 files for DNA damage applications
373 183
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) 184 ## 2021-12-10 Ben Morgan (emdna-V11-00-00)
375 - Change to new Markdown History format 185 - Change to new Markdown History format
376 186
377 --- 187 ---
378 188
379 # History entries prior to 11.0 189 # History entries prior to 11.0
380 190
381 8-11-2021, H. Tran, emdna-V10-07-15 191 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 192 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 193 - corrected the problem in IRT
384 194
385 4-11-2021, H. Tran, emdna-V10-07-14 195 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 196 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 197 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 198 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 199 Added new mesoscopic model for dna chemistry
390 200
391 21-10-2021, W.G.Shin, emdna-V10-07-13 201 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 202 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 203 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 204 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 205 G4DNAMolecularReactionTable
396 206
397 23-09-2021, A. Ribon, emdna-V10-07-12 207 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 208 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 209 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 210 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 211 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 212 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 213 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 214
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 215 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 216 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 217 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 218
409 16-07-2021, D. Sakata, emdna-V10-07-10 219 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 220 - Fixed initialization error in G4DNAELSEPAElasticModel
411 221
412 28-06-2021, G. Cosmo, emdna-V10-07-09 222 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 223 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 224 enabled.
415 225
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 226 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 227 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 228 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 229 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 230 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 231 - Modified G4DNAELSEPAElasticModel for gold
422 232
423 9-05-2021, H.Tran, tag emdna-V10-07-07 233 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 234 - Add IRT-syn model
425 235
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 236 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 237 - Migrate build to modular CMake API
428 238
429 27-04-2021, H.Tran, tag emdna-V10-07-05 239 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 240 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 241 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 242 - added OctreeFinder and IRTUtils
433 243
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 244 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 245 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 246
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 247 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 248 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 249
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 250 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 251 - Fixed dependency on g4tools, now moved to externals module.
442 252
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 253 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 254 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 255 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 256 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 257 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 258 Added the fragment displacement for new dissociation channel
449 259
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 260 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 261 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 262 help resolving observed crashes in MT runs.
453 Some code cleanup. 263 Some code cleanup.
454 264
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 265 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 266 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 267 - History file fixed
458 268
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 269 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 270 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 271 in chem6 example - do not delete instance of the singleton
462 272
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 273 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 274 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 275 required after analysis update (analysis-V10-06-05)
466 276
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 277 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 278 - Fixed coverity warning
469 279
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 280 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 281 - Fixed coverity warnings
472 - Fix of IRT bug 282 - Fix of IRT bug
473 (protection for the crash induced by empty re 283 (protection for the crash induced by empty reaction set)
474 284
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 285 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 286 - Add missing G4analysismng module dependency to G4emdna-utils
477 287
478 20-05-20: W.G.Shin emdna-V10-06-05 288 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 289 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 290 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 291 - Added missing History
482 292
483 26-04-20: W.G.Shin emdna-V10-06-04 293 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 294 - Fixed coverity test
485 295
486 15-04-20: G.Cosmo emdna-V10-06-03 296 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 297 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 298 are not allowed (as for G4ParticleDefinition). Now deleted.
489 299
490 19-02-20: W.G.Shin emdna-V10-06-02 300 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 301 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 302 - Revised headeres of IRT classes
493 303
494 12-02-20: W.G.Shin emdna-V10-06-01 304 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 305 - Added protections floating point exception in G4DNAIRT class
496 306
497 10-01-20: W.G.Shin emdna-V10-06-00 307 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 308 - Added classes for IRT
499 - Added features in management classes for IRT 309 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 310 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 311 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 312 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 313
504 15-11-19: G.Cosmo emdna-V10-05-11 314 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 315 - Fixed cases of implicit type conversions from size_t to G4int.
506 316
507 8-11-19: HT, tag emdna-V10-05-10 317 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 318 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 319 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 320 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 321
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 322 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 323 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 324 of external physical volume (meant for adapting external navigators)
515 325
516 19-10-19: WGS, SI, tag emdna-V10-05-08 326 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 327 - Added new model G4DNAELSEPAElasticModel
518 328
519 11-10-19: WGS, SI, tag emdna-V10-05-07 329 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 330 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 331 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 332 - G4DNAWaterDissociationDisplacer* : updated
523 333
524 03-06-2019, MK, tag emdna-V10-05-06 334 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 335 - Fix GCC9 warnings
526 336
527 26-03-2019, HT, tag emdna-V10-05-05 337 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 338 - Added G4DNAMolecule
529 339
530 10-03-2019, MK, tag emdna-V10-05-04 340 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 341 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 342 - Chemistry: clarify pointer ownership, clean code
533 343
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 344 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 345 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 346 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 347
538 18-01-2019, HT, tag emdna-V10-05-02 348 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 349 - Transformed the exception into warning in G4DNAMolecularDissociation
540 350
541 28-12-2018, MK, tag emdna-V10-05-01 351 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 352 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 353
544 05-01-2019, HT, tag emdna-V10-05-00 354 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 355 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 356 in G4ITStepProcessor::SetInitialStep()
547 357
548 01-09-2018, SI, tag emdna-V10-04-10 358 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 359 renamed tag
550 360
551 01-09-2018, SI, tag emdna-v10-04-09 361 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 362 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 363 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 364
555 30-07-2018, SI, tag emdna-V10-04-08 365 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 366 - included upper energy limit of models (2)
557 367
558 29-07-2018, SI, tag emdna-V10-04-07 368 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 369 - included upper energy limit of models
560 370
561 01-07-2018, SI, tag emdna-V10-04-06 371 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 372 - added protection in Auger emission
563 373
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 374 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 375 - updated Si mass in G4DNAGenericIonsManager
566 376
567 22-06-2018, SI tag emdna-V10-04-04 377 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 378 - fixed warnings in lepts models
569 379
570 14-05-2018, SI tag emdna-V10-04-03 380 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 381 - chemistry update by Mathieu
572 382
573 01-05-2018, SI tag emdna-V10-04-02 383 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 384 - chemistry update by Mathieu
575 385
576 09-02-2018, M.Asai tag emdna-V10-04-01 386 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 387 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 388 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 389 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 390 - Co-works with run-V10-04-01 and global-V10-04-01.
581 391
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 392 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 393 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 394 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 395 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 396 Thanks to Raphael Isemann for reporting these.
587 397
588 01-11-2017, MK tag emdna-V10-03-30 398 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 399 - remove models/test directory
590 400
591 31-10-2017, JA ( tag missing ) 401 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 402 - G4KDNode.hh: Add missing included file - needed in test
593 403
594 16-08-2017, SI tag emdna-V10-03-28 404 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 405 - updated variable types in models
596 406
597 10-08-2017, SI tag emdna-V10-03-27 407 10-08-2017, SI tag emdna-V10-03-27
598 - test 408 - test
599 409
600 10-08-2017, SI tag emdna-V10-03-26 410 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 411 - same as previous
602 412
603 09-08-2017, SI tag emdna-V10-03-25 413 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 414 - same as previous
605 415
606 09-08-2017, SI tag emdna-V10-03-24 416 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 417 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 418
609 03-08-2017, VI tag emdna-V10-03-23 419 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 420 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 421
612 28-07-2017, SI, tag emdna-V10-03-22 422 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 423 - added stationary mode flag to CPA100 ionisation.
614 424
615 04-07-2017, SI, tag emdna-V10-03-21 425 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 426 - added tagging of atom. deexc. products in ionisation models.
617 427
618 31-05-2017, SM, tag emdna-V10-03-20 428 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 429 - Correct windows issues with path of diff. CS data file.
620 430
621 31-05-2017, SI, tag emdna-V10-03-19 431 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 432 - roll-back (Windows issues with previous tag)
623 433
624 24-05-2017, SI, tag emdna-V10-03-18 434 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 435 - added tagging of atom. deexc. products in ionisation models.
626 436
627 11-05-2017, VI tag emdna-V10-03-17 437 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 438 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 439
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 440 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 441 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 442
633 03-05-2017, SM, tag emdna-V10-03-15 443 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 444 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 445
636 27-04-2017, SM, tag emdna-V10-03-14 446 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 447 - correct small typo mistakes.
638 448
639 27-04-2017, SM, tag emdna-V10-03-13 449 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 450 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 451
642 10-03-2017, MK, tag emdna-V10-03-12 452 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 453 - update utils/GNUmakefile
644 454
645 13-02-2017, MK, tag emdna-V10-03-11 455 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 456 - G4DNAMolecularMaterial: update doxygen doc
647 457
648 13-02-2017, MK, tag emdna-V10-03-10 458 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 459 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 460 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 461 add doxygen documentation
652 462
653 10-02-2017, MK, tag emdna-V10-03-09 463 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 464 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 465 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 466 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 467 when G4ITTrackHolder::PushToKill is called.
658 468
659 09-02-2017, MK, tag emdna-V10-03-08 469 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 470 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 471 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 472 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 473 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 474 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 475
666 24-01-2017, SM, tag emdna-V10-03-07 476 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 477 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 478
669 23-01-2017, SM, tag emdna-V10-03-06 479 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 480 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 481
672 23-01-2017, SM CV, tag emdna-V10-03-05 482 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 483 - add new G4DNAPTB* classes and the structure of the new material management system
674 484
675 14-01-2017, MK, tag emdna-V10-02-37 485 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 486 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 487 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 488 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 489
680 28-12-2016, SI, tag emdna-V10-03-04 490 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 491 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 492 G4DNARuddIonisationExtendedModel
683 493
684 27-12-2016, SI, tag emdna-V10-03-03 494 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 495 - updated references of CPA100 classes
686 496
687 23-12-2016, SI, tag emdna-V10-03-02 497 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 498 - updated sources.cmake
689 499
690 23-12-2016, SI, tag emdna-V10-03-01 500 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 501 - commit of first CPA100 classes, part 2
692 502
693 21-12-2016, SI, tag emdna-V10-03-00 503 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 504 - commit of first CPA100 classes
695 505
696 27-11-2016, MK, tag emdna-V10-02-36 506 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 507 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 508 - G4DNADamages -> G4DNADamage
699 509
700 17-11-2016, MK, tag emdna-V10-02-35 510 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 511 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 512
703 16-11-2016, MK, tag emdna-V10-02-34 513 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 514 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 515 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 516 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 517 G4VTrackStateID::Create() to cc file - windows crash
708 518
709 15-11-2016, MK, tag emdna-V10-02-33 519 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 520 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 521
712 14-11-2016, MK, tag emdna-V10-02-32 522 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 523 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 524 windows platforms
715 525
716 14-11-2016, MK, tag emdna-V10-02-31 526 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 527 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 528 tag init constexpr factor with number rather than expression
719 529
720 14-11-2016, MK, tag emdna-V10-02-30 530 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 531 - Use CLHEP::pi instead of M_PI
722 532
723 14-11-2016, MK, tag emdna-V10-02-29 533 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 534 - Correct bracket enclosing
725 535
726 14-11-2016, MK, tag emdna-V10-02-28 536 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 537 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 538 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 539 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 540 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 541 - Adds and use G4CTCounter
732 542
733 02-11-2016, MK, tag emdna-V10-02-27 543 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 544 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 545 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 546 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 547 computeStep & computeSafety
738 548
739 07-08-2016, SI, tag emdna-V10-02-26 549 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 550 - added stationnary mode to sub-excitation electron processes
741 551
742 23-06-2016, MK 552 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 553 - G4Scheduler: move G4IosFlagsSaver to Process()
744 554
745 3-06-2016, MK, tag emdna-V10-02-25 555 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 556 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 557 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 558 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 559
750 3-06-2016, MK, tag emdna-V10-02-24 560 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 561 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 562 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 563 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 564 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 565 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 566 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 567 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 568 model used for another part than e-
759 569
760 1-06-2016, MK, tag emdna-V10-02-23 570 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 571 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 572 logic for interface with physics models
763 573
764 31-05-2016, MK, tag emdna-V10-02-22 574 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 575 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 576
767 28-05-2016, MK, tag emdna-V10-02-21 577 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 578 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 579 one of the previous tags
770 580
771 19-05-2016, MK, tag emdna-V10-02-20 581 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 582 - G4ITNavigator: remove warnings on gcc6.1
773 583
774 17-05-2016, MK, tag emdna-V10-02-19 584 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 585 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 586 correct model and process names for solvation
777 587
778 12-05-2016, MK, tag emdna-V10-02-18 588 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 589 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 590 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 591 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 592 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 593 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 594 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 595 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 596 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 597 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 598 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 599 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 600 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 601 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 602 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 603 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 604 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 605 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 606 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 607 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 608 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 609 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 610 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 611 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 612 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 613 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 614 created; otherwise, the primary electron is killed
805 615
806 30-04-2016, MK, tag emdna-V10-02-17 616 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 617 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 618
809 30-04-2016, MK, tag emdna-V10-02-16 619 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 620 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 621 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 622 unregistered molecule definition
813 623
814 22-04-2016, MK, tag emdna-V10-02-15 624 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 625 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 626 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 627
818 22-04-2016, MK, tag emdna-V10-02-14 628 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 629 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 630 remove usage of internal energy boundaries
821 631
822 19-03-2016, SI, tag emdna-V10-02-13 632 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 633 - added nrj extensibility to SR and USR models
824 634
825 11-03-2016, SI, tag emdna-V10-02-12 635 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 636 -roll back to files in emdna-V10-02-06
827 637
828 10-03-2016, SI, tag emdna-V10-02-11 638 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 639 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 640 and G4DNAScreenedRutherfordElasticModel
831 641
832 10-03-2016, SI, tag emdna-V10-02-10 642 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 643 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 644
835 07-03-2016, SI, tag emdna-V10-02-09 645 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 646 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 647 of G4DNAUeharaScreenedRutherfordElasticModel
838 648
839 06-03-2016, SI, tag emdna-V10-02-08 649 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 650 -removed useless G4Pow declaration
841 651
842 04-03-2016, SI, tag emdna-V10-02-07 652 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 653 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 654 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 655
846 02-03-2016, SI, tag emdna-V10-02-06 656 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 657 -replaced std::exp by G4Exp
848 658
849 02-03-2016, SI, tag emdna-V10-02-05 659 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 660 -replaced std::exp by G4Exp
851 661
852 02-03-2016, SI, tag emdna-V10-02-04 662 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 663 -replaced std::exp by G4Exp
854 664
855 01-03-2016, SI, tag emdna-V10-02-03 665 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 666 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 667 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 668 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 669 by S. Okada (KEK, JP)
860 670
861 17-02-2016, MK, tag emdna-V10-02-02 671 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 672 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 673
864 16-12-2015, SI, tag emdna-V10-02-01 674 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 675 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 676 added protection on energy for interpolation method change
867 677
868 16-12-2015, SI, tag emdna-V10-02-00 678 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 679 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 680 energy
871 681
872 13-11-2015, MK, tag emdna-V10-01-55 682 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 683 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 684 file
875 685
876 10-11-2015, MK, tag emdna-V10-01-54 686 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 687 * remove unused variables
878 688
879 10-11-2015, MK, tag emdna-V10-01-53 689 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 690 * Coverity fixes
881 691
882 06-11-2015, MK, tag emdna-V10-01-52 692 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 693 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 694
885 06-11-2015, MK, tag emdna-V10-01-51 695 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 696 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 697 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 698
889 06-11-2015, MK, tag emdna-V10-01-50 699 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 700 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 701 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 702 * Add G4ITStepProcessorState_Lock.hh
893 703
894 06-11-2015, MK, tag emdna-V10-01-49 704 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 705 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 706 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 707 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 708 but in the source file - causing crashes on windows
899 709
900 04-11-2015, MK, tag emdna-V10-01-48 710 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 711 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 712 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 713 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 714 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 715 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 716 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 717 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 718 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 719 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 720 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 721 all dissociation products have been defined (they will just not be taken
912 into account) 722 into account)
913 * G4DNAMolecularReactionTable: delete reaction 723 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 724
915 03-11-2015, MK, tag emdna-V10-01-47 725 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 726 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 727 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 728 the call
919 729
920 03-11-2015, MK, tag emdna-V10-01-46 730 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 731 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 732 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 733 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 734 (causing navigator complains)
925 735
926 03-11-2015, MK, tag emdna-V10-01-45 736 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 737 * G4Serialize: Add definition in header for G4String
928 738
929 02-11-2015, MK, tag emdna-V10-01-44 739 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 740 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 741 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 742 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 743 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 744 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 745 -> G4MolecularConfMan is taking care of this
936 746
937 30-10-2015, MK, tag emdna-V10-01-43 747 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 748 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 749 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 750 * Unit tests corrected
941 * G4VITDiscreteProcess added 751 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 752 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 753 * Intermediate update for 10.2 release
944 754
945 27-10-2015, MK, tag emdna-V10-01-42 755 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 756 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 757
948 26-10-2015, MK, tag emdna-V10-01-41 758 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 759 * Sanche model: try to solve std::vector out of bounds
950 760
951 23-10-2015, MK, tag emdna-V10-01-40 761 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 762 * remove all CLHEP::shared_ptr usage
953 763
954 23-10-2015, CV, SM, tag emdna-V10-01-39 764 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 765 * Addded base class G4VDNAPTBModel
956 766
957 28-09-2015, SI, tag emdna-V10-01-38 767 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 768 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 769
960 19-09-2015, MK, tag emdna-V10-01-37 770 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 771 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 772 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 773
964 17-09-2015, MK, tag emdna-V10-01-36 774 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 775 * G4MoleculeGun: Remove compilation warnings
966 776
967 04-09-2015 MK, tag emdna-V10-01-35 777 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 778 * Fix G4MoleculeGun compilation errors
969 779
970 03-09-2015 SI, tag emdna-V10-01-34 780 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 781 * Added stationary regime to all inelastic models
972 782
973 19-08-2015, MK 783 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 784 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 785 - compatible with both Smoluchowski & Gillespie models
976 786
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 787 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 788 * Added easier handling of cumulative proba. in SR elastic models
979 789
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 790 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 791 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 792 declaration of G4MoleculeShoot.
983 793
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 794 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 795 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 796 declaration of G4MoleculeShootMessenger.
987 797
988 12-08-2015, MK, tag emdna-V10-01-29 798 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 799 * Add G4Serialize in the build tree temporarily
990 800
991 12-08-2015, MK, tag emdna-V10-01-28 801 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 802 * G4Serialize added
993 803
994 12-08-2015, MK 804 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 805 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 806
997 24-07-2015, MK 807 24-07-2015, MK
998 - G4MolecularReactionTable 808 - G4MolecularReactionTable
999 * Add get methods 809 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 810 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 811 * Molecule gun : place randomly in a box
1002 812
1003 15-07-2015, MK 813 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 814 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 815 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 816 * processes & models initialisation again
1007 817
1008 15-07-2015, MK, tag emdna-V10-01-26 818 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 819 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 820 * add macro to prevent warnings in non-verbose mode
1011 821
1012 11-07-2015, MK, tag emdna-V10-01-25 822 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 823 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 824 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 825
1016 10-07-2015, MK, tag emdna-V10-01-24 826 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 827 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 828 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 829 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 830 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 831
1022 08-07-2015, MK, tag emdna-V10-01-23 832 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 833 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 834 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 835 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 836 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 837 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 838 - G4MoleculeDefinition:
1029 ::SetFormatedName added 839 ::SetFormatedName added
1030 ::NewConfiguration methods added 840 ::NewConfiguration methods added
1031 ::NewConfiguration added 841 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 842 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 843 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 844 ::Finalize added
1035 - G4MolecularConfiguration: 845 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 846 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 847 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 848 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 849 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 850 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 851 than molecule models
1042 - G4Molecule add constructor where only G4Mol 852 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 853 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 854 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 855 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 856 - G4DNAElectronHoleRecombination added
1047 857
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 858 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 859 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 860 fasterCode usage on shell selection.
1051 861
1052 26-06-2015, MK 862 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 863 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 864 warning message description
1055 865
1056 16-06-205, MK 866 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 867 - Add G4Scheduler::GetGun()
1058 868
1059 16-06-2015, MK, tag emdna-V10-01-21 869 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 870 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 871 - G4DNAIonElasticModel: clean and fix double free
1062 872
1063 12-06-2015, MK, tag emdna-V10-01-20 873 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 874 - remove virtual keyword from G4IT::GetPosition()
1065 875
1066 04-06-2015, MK 876 04-06-2015, MK
1067 - just cosmetics 877 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 878 - remove virtual keyword from G4IT::operator[]
1069 879
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 880 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 881 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 882 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 883 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 884 - Fully qualify std::string elsewhere as needed to adjust
1075 885
1076 22-05-2015, John Allison, tag emdna-V10-01-18 886 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 887 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 888 "G4Threading::IsMasterThread()".
1079 889
1080 17-05-2015, MK, tag emdna-V10-01-17 890 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 891 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 892 - Correct sources.cmake
1083 - Born headears: includes both model versions 893 - Born headears: includes both model versions when proxy header is included
1084 894
1085 16-05-2015, MK, tag emdna-V10-01-16 895 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 896 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 897 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 898 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 899 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 900 - Add G4DNABornExcitationModel2 (temporary)
1091 901
1092 15-05-2015, MK, tag emdna-V10-01-15 902 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 903 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 904
1095 14-05-2015, MK, tag emdna-V10-01-14 905 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 906 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 907
1098 14-05-2015, MK, tag emdna-V10-01-13 908 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 909 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 910 - G4ITReaction: try to solve compilation error
1101 911
1102 12-05-2015, MK, tag emdna-V10-01-12 912 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 913 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 914
1105 12-05-2015, MK, tag emdna-V10-01-11 915 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 916 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 917
1108 11-05-2015, MK, tag emdna-V10-01-10 918 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 919 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 920 +Add GetPartialCrossSection
1111 +Code cleaning 921 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 922 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 923 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 924 - G4DNAChemistryManager::GetValue(...) added
1115 925
1116 02-05-2015, MK 926 02-05-2015, MK
1117 - Update G4TrackState & related classes 927 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 928 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 929 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 930 +comment useless method
1121 - G4Scheduler: 931 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 932 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 933 +remove fTmpEndTime
1124 +Add CanICarryOn 934 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 935 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 936
1127 18-03-2015, MK, tag emdna-V10-01-08 937 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 938 - Same as before, just add the missing History file
1129 939
1130 18-03-2015, MK, tag emdna-V10-01-07 940 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 941 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 942 instead of a reference
1133 943
1134 12-02-2015, MK, tag emdna-V10-01-06 944 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 945 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 946 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 947 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 948
1139 11-02-2015, MK, tag emdna-V10-01-05 949 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 950 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 951 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 952 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 953
1144 16-01-2015, SI, tag emdna-V10-01-04 954 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 955 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 956
1147 14-12-2014, MK, tag emdna-V10-01-03 957 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 958 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 959 - ScreenRutherfordElastic: correct retrieval of water density
1150 960
1151 13-12-2014, SI, tag emdna-V10-01-02 961 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 962 - Added elastic model by H. Tran.
1153 963
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 964 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 965 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 966 to allow for compilation on Linux/clang-3.5.
1157 967
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 968 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 969 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 970 include missing files:
1161 G4ITTransportationManager.icc 971 G4ITTransportationManager.icc
1162 G4KDNode.icc 972 G4KDNode.icc
1163 G4KDTree.icc 973 G4KDTree.icc
1164 G4MoleculeFinder.hh 974 G4MoleculeFinder.hh
1165 975
1166 01-12-2014, MK, tag emdna-V10-00-63 976 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 977 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 978 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 979 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 980 when the particle has reached a boundary
1171 981
1172 28-11-2014, MK, tag emdna-V10-00-62 982 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 983 - Retag
1174 984
1175 28-11-2014, MK, tag emdna-V10-00-61 985 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 986 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 987 - Fix Brownian navigation
1178 - Some fixes related to scheduler 988 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 989 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 990 - Enhance comments
1181 991
1182 24-11-2014, MK, tag emdna-V10-00-60 992 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 993 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 994
1185 24-11-2014, MK, tag emdna-V10-00-59 995 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 996 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 997 - Remove useless verbose
1188 - Try to compile on all platforms 998 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 999 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 1000 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 1001 Just registering constructor is enough to initialized the chemistry
1192 1002
1193 24-11-2014, MK, tag emdna-V10-00-58 1003 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 1004 - G4FastList: remove all friend declarations
1195 1005
1196 22-11-2014, MK, tag emdna-V10-00-57 1006 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 1007 - Another attempt to compile G4FastList on all platforms
1198 1008
1199 22-11-2014, MK, tag emdna-V10-00-56 1009 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 1010 - Attempt to compile G4FastList on all platforms
1201 1011
1202 21-11-2014, MK, tag emdna-V10-00-55 1012 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 1013 - Attempt to compile G4FastList with clang
1204 1014
1205 21-11-2014, MK, tag emdna-V10-00-54 1015 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 1016 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 1017 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 1018 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 1019 - Update G4ITNavigator2 to the G4Navigator of John
1210 1020
1211 21-11-2014, MK, tag emdna-V10-00-53 1021 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 1022 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 1023 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 1024 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 1025 is false by default --> uses the random time computation for crossing
1216 boundaries 1026 boundaries
1217 1027
1218 20-11-2014, SI, tag emdna-V10-00-52 1028 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 1029 - Improved error message for missing data in PW elastic model
1220 1030
1221 08-11-2014, MK, tag emdna-V10-00-51 1031 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 1032 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 1033 when the asked item is not found
1224 1034
1225 03-11-2014 MK, tag emdna-V10-00-50 1035 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 1036 - correct track creation by G4MoleculeGunMessenger
1227 1037
1228 03-11-2014 MK, tag emdna-V10-00-49 1038 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 1039 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 1040 - Correct a bug in G4MoleculeGun
1231 1041
1232 28-10-2014 PA, tag emdna-V10-00-48 1042 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 1043 - correct compilation warnings
1234 1044
1235 28-10-2014 PA, tag emdna-V10-00-47 1045 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 1046 - correct compilation warnings
1237 1047
1238 28-10-2014 PA, tag emdna-V10-00-46 1048 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 1049 - correction in sources.cmake
1240 1050
1241 28-10-2014 PA, tag emdna-V10-00-45 1051 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 1052 - retag to add LEPTS
1243 1053
1244 28-10-2014 PA, tag emdna-V10-00-44 1054 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 1055 - add LEPTS
1246 1056
1247 25-10-2014 MK, tag emdna-V10-00-43 1057 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 1058 - remove useless G4VITScheduler
1249 1059
1250 25-10-2014 MK, tag emdna-V10-00-42 1060 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 1061 - correct warnings
1252 1062
1253 24-10-2014 MK, tag emdna-V10-00-41 1063 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 1064 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 1065 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 1066 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 1067 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 1068 - G4ITFinder added
1259 - G4VITTrackHolder added 1069 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 1070 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 1071 - code cleaned + useless classes removed
1262 1072
1263 24-10-2014 MK, tag emdna-V10-00-40 1073 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 1074 - G4ITStepManager: remove verbose at closure time
1265 1075
1266 21-10-2014 MK, tag emdna-V10-00-39 1076 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 1077 - try to solve crash at closure time
1268 1078
1269 21-10-2014 MK, tag emdna-V10-00-38 1079 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 1080 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 1081 table when deleted
1272 - update disclaimer 1082 - update disclaimer
1273 1083
1274 17-10-2014 MK, tag emdna-V10-00-37 1084 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 1085 - clean code
1276 - G4ITStepManager: one can ask why simulation 1086 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 1087 - remove useless verbose
1278 1088
1279 17-10-2014 MK, tag emdna-V10-00-36 1089 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 1090 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 1091 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 1092 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 1093
1284 10-10-2014 MK, tag emdna-V10-00-35 1094 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 1095 Avoid use of std::map at the application level in TimeStepAction
1286 1096
1287 07-10-2014 MK, tag emdna-V10-00-34 1097 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 1098 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 1099 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 1100 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 1101
1292 07-10-2014 MK, tag emdna-V10-00-33 1102 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 1103 Initialize G4ITStepManager in G4DNAChemistryManager
1294 1104
1295 17-09-2014 MK, tag emdna-V10-00-32 1105 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 1106 Add G4ITStepManager + messenger
1297 Tag before architecture change 1107 Tag before architecture change
1298 1108
1299 12-07-2014 SI, tag emdna-V10-00-31 1109 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 1110 Removed obsolete class for electron excitation
1301 1111
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 1112 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 1113 - Get rid of obsolete 'register' keyword in code.
1304 1114
1305 05-06-2014 SI, tag emdna-V10-00-29 1115 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 1116 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 1117 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 1118 G4GenericIon usage
1309 - requires G4EMLOW6.39 1119 - requires G4EMLOW6.39
1310 1120
1311 04-06-2014 MK, tag emdna-V10-00-28 1121 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 1122 Remove directory management/include/impl
1313 Prepare for release 1123 Prepare for release
1314 1124
1315 04-06-2014 MK, tag emdna-V10-00-27 1125 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 1126 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 1127 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 1128 Avoid usage of molecule iterators as pointers
1319 1129
1320 03-06-2014 SI, tag emdna-V10-00-26 1130 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 1131 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 1132
1323 28-05-2014 VI, SI tag emdna-V10-00-25 1133 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 1134 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 1135 Ionisation models switch to use angular generator
1326 interface 1136 interface
1327 1137
1328 12.05.2014 MK, tag emdna-V10-00-24 1138 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 1139 Try to remove warnings 4
1330 1140
1331 12.05.2014 MK, tag emdna-V10-00-23 1141 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 1142 Try to remove warnings 3
1333 1143
1334 12.05.2014 MK, tag emdna-V10-00-22 1144 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 1145 Try to remove warnings 2
1336 1146
1337 12.05.2014 MK, tag emdna-V10-00-21 1147 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 1148 Try to remove warnings
1339 1149
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 1150 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 1151 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 1152 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 1153 G4EMLOW6.38 needed
1344 1154
1345 07-04-2014 SI tag emdna-V10-00-19 1155 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 1156 Changed faster method interpolation in
1347 G4DNABornIonisationModel 1157 G4DNABornIonisationModel
1348 1158
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 1159 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 1160 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 1161 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 1162 Corrected order of inclusion of some headers and use of <>/"".
1353 1163
1354 04-04-2014 MK tag emdna-V10-00-17 1164 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 1165 Try to solve warnings when G4VERBOSE is off
1356 1166
1357 02-04-2014 MK tag emdna-V10 1167 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 1168 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 1169
1360 02-04-2014 MK tag emdna-V10 1170 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 1171 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 1172
1363 02-04-2014 MK tag emdna-V10 1173 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1174 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1175 -> this part is withdrawn for now
1366 1176
1367 02-04-2014 MK tag emdna-V10 1177 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1178 - version 2 : try fixing the build error on mac
1369 1179
1370 02-04-2014 MK tag emdna-V10 1180 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1181 - version 1 : try to fix build errors and warnings on mac
1372 1182
1373 02-04-2014 MK tag emdna-V10 1183 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1184 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1185 (G4MemStat & G4MolecularConfiguration)
1376 1186
1377 02-04-2014 MK tag emdna-V10 1187 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1188 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1189 (problem coming from having as a friend class a template argument)
1380 1190
1381 02-04-2014 MK tag emdna-V10 1191 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1192 - try to fix build error on windows platform
1383 1193
1384 01-04-2014 MK tag emdna-V10 1194 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1195 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1196 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1197
1388 01-04-2014 MK tag emdna-V10 1198 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1199 - reset CMakeLists.txt
1390 1200
1391 01-04-2014 MK tag emdna-V10 1201 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1202 - update chemistry
1393 1203
1394 01-04-2014 SI tag emdna-V10-00-05 1204 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1205 - Modified calculation of secondary kinetic for fast code
1396 1206
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1207 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1208 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1209 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1210 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1211
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1212 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1213 - Added several clear() to vectors for MT
1404 1214
1405 17-03-2014 SI tag emdna-V10-00-02 1215 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1216 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1217 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1218 to be used with G4EMLOW6.36
1409 1219
1410 12-12-2013 M.K tag emdna-V10-00-01 1220 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1221 - G4DNAMolecularMaterial: Remove unused variable
1412 1222
1413 12-12-2013 M.K tag emdna-V10-00-00 1223 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1224 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1225 a model is not created at initialisation time
1416 1226
1417 21-11-2013 V.I. tag emdna-V09-06-22 1227 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1228 - G4ITStepProcessor2 - removed obsolete unused header
1419 1229
1420 01-11-2013 M.K tag emdna-V09-06-21 1230 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1231 - Correct incorrect singleton check introduced in previous tag
1422 1232
1423 01-11-2013 M.K tag emdna-V09-06-20 1233 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1234 - Prepare for release bis
1425 1235
1426 01-11-2013 M.K tag emdna-V09-06-19 1236 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1237 - Prepare for release
1428 1238
1429 10-10-2013 M.K. tag emdna-V09-06-18 1239 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1240 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1241
1432 06-10-2013 M.K. tag emdna-V09-06-17 1242 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1243 - Same as before once again
1434 1244
1435 03-10-2013 M.K. tag emdna-V09-06-16 1245 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1246 - Same as before
1437 1247
1438 03-10-2013 M.K. tag emdna-V09-06-15 1248 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1249 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1250 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1251 by the user - stage 1
1442 1252
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1253 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1254 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1255 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1256 with virtual keyword in G4VITProcess.
1447 1257
1448 12-09-2013 M.K. tag emdna-V09-06-13 1258 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1259 Correction of an inadvertent modification introduced in previous tag
1450 1260
1451 12-09-2013 M.K. tag emdna-V09-06-12 1261 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1262 Correct bound checks in G4ITManager.icc
1453 1263
1454 16-08-2013 S.I. tag emdna-V09-06-11 1264 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1265 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1266
1457 16-08-2013 S.I. tag emdna-V09-06-10 1267 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1268 Added G4DNAIons
1459 1269
1460 25-06-2013 M.K. tag emdna-V09-06-09 1270 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1271 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1272 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1273 auto_ptr according to c++ std version
1464 1274
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1275 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1276 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1277 for problem accidentally introduced in previous tag.
1468 1278
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1279 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1280 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1281 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1282 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1283 compilation on Windows.
1474 1284
1475 06-06-2013 S.I. tag emdna-V09-06- 1285 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1286 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1287 Requires G4EMLOW version 6.33
1478 1288
1479 25-05-2013 M.K. tag emdna-V09-06- 1289 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1290 *Fix warning compilation in G4KDMap for specific gcc version
1481 1291
1482 24-05-2013 M.K. tag emdna-V09-06- 1292 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1293 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1294 but still not in usage
1485 1295
1486 23-05-2013 M.K. tag emdna-V09-06- 1296 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1297 * G4KDMap : try fix error on std:ceil call on windows
1488 1298
1489 23-V09-06-03-05-2013 M.K. tag emd 1299 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1300 * G4KDMap : used deque::iterator
1491 1301
1492 1302
1493 22-05-2013 M.K. tag emdna-V09-06- 1303 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1304 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1305 * G4KDMap : pop out elements from map
1496 1306
1497 22-05-2013 M.K. tag emdna-V09-06-00 1307 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1308 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1309 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1310 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1311 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1312 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1313 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1314 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1315 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1316 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1317
1508 12-11-2012 M.K tag emdna-V09-05- 1318 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1319 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1320 coverity warnings (rev 64993)
1511 1321
1512 06-11-2012 G.Cosmo tag emdna-V09 1322 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1323 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1324 for objects in maps...
1515 1325
1516 04-11-2012 M.K. tag emdna-V09-05-33 1326 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1327 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1328 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1329 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1330 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1331 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1332 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1333 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1334 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1335 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1336 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1337 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1338 add "else" before "if" statements and
1529 add variables to avoid ma 1339 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1340 dna.files : update files (rev 64725)
1531 1341
1532 03-11-2012 S.I. tag emdna-V09-05-32 1342 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1343 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1344 classes
1535 1345
1536 24-10-2012 M.K tag emdna-V09 1346 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1347 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1348 (previously commented)
1539 1349
1540 23-10-2012 M.K tag emdna-V09 1350 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1351 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1352 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1353
1544 18-10-2012 M.K tag emdna-V09 1354 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1355 Previous tag did not include history changes
1546 1356
1547 18-10-2012 M.K tag emdna-V09 1357 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1358 Remove warning
1549 1359
1550 17-10-2012 M.K tag emdna-V09 1360 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1361 Correct a typo from previous tag
1552 1362
1553 17-10-2012 M.K tag emdna-V09 1363 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1364 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1365 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1366 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1367
1558 01-10-2012 SI, P.Pater tag emdna-V09 1368 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1369 Force kinetic energy to zero for real killings in models.
1560 1370
1561 12-07-2012 G.Cosmo tag emdna-V09 1371 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1372 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1373 constants, in plan to remove implicit inclusion from globals.hh.
1564 1374
1565 11.07.2012 M.K tag emdna-V09 1375 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1376 Correct warnings introduce in previous tag
1567 1377
1568 11.07.2012 M.K tag emdna-V09 1378 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1379 Tag to be proposed
1570 1380
1571 25.06.2012 M.K tag emdna-V09-05-21 1381 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1382 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1383 Modify molecule's name
1574 1384
1575 21.06.2012 S.I tag emdna-V09-05-20 1385 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1386 Update of electron elastic scattering low limit
1577 1387
1578 09.06.2012 M.K tag emdna-V09-05-19 1388 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1389 Fixed shadowing
1580 1390
1581 04.06.2012 M.K tag emdna-V09-05-18 1391 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1392 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1393
1584 24.05.2012 M.K tag emdna-V09-05-17 1394 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1395 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1396
1587 23.05.2012 M.K tag emdna-V09-05-16 1397 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1398 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1399 G4ITStepManager
1590 Prevent call of destructor of G4I 1400 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1401 G4DNAChemistryManager
1592 1402
1593 23.05.2012 M.K tag emdna-V09-05-15 1403 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1404 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1405 when one of its methods is called using a material that is
1596 not defined as a molecule 1406 not defined as a molecule
1597 1407
1598 21.05.2012 M.K tag emdna-V09-05-14 1408 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1409 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1410 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1411 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1412 Modify all models to use G4DNAMolecularMaterial
1603 1413
1604 14.05.2012 M.K tag emdna-V09-05-13 1414 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1415 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1416 Add G4DNADamages
1607 1417
1608 10.05.2012 M.K tag emdna-V09-05-12 1418 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1419 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1420 from UserReactionAction::EndProcessing()
1611 1421
1612 08.05.2012 M.K tag emdna-V09-05-11 1422 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1423 Use inverseErf from CLHEP
1614 1424
1615 03.05.2012 M.K tag emdna-V09-05-10 1425 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1426 Add erfc function for windows compilator (VC++)
1617 1427
1618 03.05.2012 M.K tag emdna-V09-05-09 1428 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1429 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1430
1621 03.05.2012 M.K tag emdna-V09-05-08 1431 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1432 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1433 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1434 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1435 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1436 Reset() at the end of G4ITStepManager::Process()
1627 1437
1628 30.03.2012 M.K tag emdna-V09-05-07 1438 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1439 Same as emdna-V09-05-06
1630 1440
1631 30.03.2012 M.K tag emdna-V09-05-06 1441 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1442 1) Add separate navigator for synchronous tracking
1633 New classes : 1443 New classes :
1634 * G4ITTransportationManager 1444 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1445 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1446 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1447 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1448 3) Solve bugs with normal and brownian ITTransportation
1639 1449
1640 14.03.2012 M.K tag emdna-V09-05-05 1450 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1451 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1452 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1453 -> become size_t + related changes
1644 * when a poststep process propo 1454 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1455 => considered as a time, and transportation::computestep
1646 is used 1456 is used
1647 1457
1648 14.03.2012 M.K tag emdna-V09-05-04 1458 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1459 Fix compilation warning
1650 1460
1651 14.03.2012 M.K tag emdna-V09-05-03 1461 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1462 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1463 Fix coverity warnings
1654 1464
1655 18.01.2012 S.I. tag emdna-V09 1465 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1466 Removal of G4Water* classes in utils
1657 1467
1658 11.01.2012 M.K tag emdna-V09 1468 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1469 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1470 concerning the final position of the solvated electron
1661 using Sanche thermalization 1471 using Sanche thermalization
1662 1472
1663 16.12.2011 S.I tag emdna-V09 1473 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1474 Updated source of cross section file for elastic scattering
1665 1475
1666 25.11.2011 M.K tag emdna-V09 1476 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1477 Correct a typo in previous tag
1668 1478
1669 25.11.2011 M.K tag emdna-V09 1479 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1480 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1481 rather than center of mass in DNAMolecularReaction
1672 1482
1673 21.11.2011 M.K tag emdna-V09 1483 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1484 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1485 avoid conflicts with ROOT.
1676 Add short class description (comm 1486 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1487 in JavaDoc style for doxygen use.
1678 1488
1679 21.11.2011 M.K tag emdna-V09 1489 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1490 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1491 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1492 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1493 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1494 when the time steps returned by the time stepper
1685 and the processes are equal 1495 and the processes are equal
1686 Improve verbose 1496 Improve verbose
1687 1497
1688 21.11.2011 M.K tag emdna-V09 1498 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1499 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1500 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1501 Correct verbose in new models & process
1692 1502
1693 18.11.2011 M.K tag emdna-V09 1503 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1504 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1505 in G4DNAChemistryManager
1696 1506
1697 18.11.2011 M.K tag emdna-V09 1507 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1508 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1509 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1510 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1511
1702 15.11.2011 G.Cosmo tag emdna-V09 1512 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1513 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1514 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1515 Windows.
1706 Fixed compilation warning on icc 1516 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1517 G4MolecularDecayTable.cc
1708 1518
1709 10.11.2011 M.K. tag emdna-V09 1519 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1520 Fix a bug in G4DNATransformElectronModel
1711 1521
1712 10.11.2011 M.K. tag emdna-V09 1522 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1523 Clean classes for release
1714 Add comment into source 1524 Add comment into source
1715 Change name of some methods 1525 Change name of some methods
1716 Transform two independent singlet 1526 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1527 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1528 (ITStepMan + DNAChemMan)
1719 1529
1720 10.11.2011 M.K. tag emdna-V09 1530 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1531 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1532 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1533 the chemistryManager.
1724 1534
1725 09.11.2011 M.K. tag emdna-V09 1535 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1536 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1537 in G4TrackListNode.
1728 Simplify and improve the use of d 1538 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1539 Add more convenient methods in userReactionAction
1730 1540
1731 08.11.2011 M.K. tag emdna-V09 1541 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1542 Fix coverity warnings
1733 1543
1734 07.11.2011 M.K. tag emdna-V09 1544 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1545 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1546 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1547 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1548 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1549 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1550 Clean classes for release
1741 1551
1742 03.11.2011 M.K. tag emdna-V09 1552 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1553 Add dna libs in sources.cmake
1744 1554
1745 03.11.2011 M.K. tag emdna-V09 1555 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1556 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1557 Add dna includes in sources.cmake
1748 1558
1749 01.11.2011 M.K. tag emdna-V09 1559 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1560 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1561 G4ITTransportation, G4TrackList on Windows
1752 1562
1753 01.11.2011 G.Cosmo 1563 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1564 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1565 updated GNUMakefiles to have it properly defined.
1756 1566
1757 31.10.2011 M.K tag emdna-V09-04-35 1567 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1568 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1569 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1570 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1571 Fix windows compilation errors & warnings
1762 1572
1763 28.10.2011 M.K tag emdna-V09-04-34 1573 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1574 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1575 Plus remove obsolete G4Exception
1766 1576
1767 28.10.2011 M.K tag emdna-V09-04-33 1577 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1578 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1579 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1580 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1581 to models
1772 1582
1773 27.10.2011 M.K tag emdna-V09-04-32 1583 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1584 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1585 coverity errors.
1776 1586
1777 26.10.2011 M.K tag emdna-V09-04-31 1587 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1588 change std::shared_ptr to CLHEP::shared_ptr
1779 1589
1780 26.10.2011 M.K. tag emdna-V09-04-30 1590 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1591 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1592 G4MolecularConfiguration::fManager added
1783 1593
1784 26.10.2011 M.K. tag emdna-V09-04-29 1594 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1595 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1596 Add electron solvatation process & models
1787 Add chemical processes 1597 Add chemical processes
1788 1598
1789 21.10.2011 M.K. tag emdna-V09-04-28 1599 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1600 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1601 emdna-V09-04-24
1792 1602
1793 21.10.2011 M.K. tag emdna-V09-04-27 1603 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1604 CMake fixes from emdna-V09-04-24
1795 1605
1796 21.10.2011 M.K. tag emdna-V09-04-26 1606 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1607 Bug fixes and new dev from the previous tag
1798 1608
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1609 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1610 Extension of ionisation by HZE proposed by Z. Francis
1801 1611
1802 20.10.2011 M.K. tag emdna-V09-04-24 1612 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1613 Bug fixes and new dev from the previous tag
1804 1614
1805 07.10.2011 M.K. tag emdna-V09-04-23 1615 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1616 First tag with "molecules" files
1807 1617
1808 07.10.2011 M.K. tag emdna-V09-04-22 1618 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1619 Add molecules+management directory
1810 First tag with "management" files 1620 First tag with "management" files
1811 1621
1812 09.09.2011 G.Folger tag emdna-V09 1622 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1623 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1624 G4DNAMoleculeManager.cc
1815 1625
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1626 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1627 Updated sources.make and CMakeLists.txt
1818 1628
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1629 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1630 Reorganized whole architecture.
1821 1631
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1632 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1633 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1634 if no deexcitation)
1825 1635
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1636 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1637 Changed code (em0006) numbering for G4Exception
1828 1638
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1639 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1640 Switched to new G4Exception syntax
1831 1641
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1642 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1643 Added enhanced debug information in ionisation models
1834 1644
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1645 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1646 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1647
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1648 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1649 Removed obsolete information.
1840 1650
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1651 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1652 Updated deexcitation initialization in ionization models.
1843 1653
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1654 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1655 Coverity warnings removal
1846 1656
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1657 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1658 - Increased energy limits for
1849 G4DNAChargeIncrease 1659 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1660 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1661 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1662 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1663 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1664 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1665 of ionisation classes for Auger e-
1856 1666
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1667 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1668 Further compilation warnings removal
1859 1669
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1670 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1671 Compilation warnings removal
1862 1672
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1673 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1674 added Atomic Deexcitation to Ionisation Models
1865 1675
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1676 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1677 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1678 G4DNADingfelderChargeIncreaseModel.cc.
1869 1679
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1680 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1681 Changed process sub-type numbering.
1872 1682
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1683 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1684 Fixed coverity warnings.
1875 1685
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1686 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1687 Updated all models for handling of variable density.
1878 1688
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1689 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1690 Addition of dependencies to configuration files.
1881 1691
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1692 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1693 Addition of all files.
1884 1694
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1695 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1696 Creation of dna sub-package in electromagnetic category.