| Geant4 Cross Reference |
1 # Category emdna History 1 # Category emdna History
2 2
3 See `CONTRIBUTING.rst` for details of **requir 3 See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
4 which **must** added in reverse chronological 4 which **must** added in reverse chronological order (newest at the top).
5 It must **not** be used as a substitute for wr 5 It must **not** be used as a substitute for writing good git commit messages!
6 6
7 ---------------------------------------------- 7 -------------------------------------------------------------------------------
8 8
9 ## 2024-10-31 Hoang Tran (emdna-V11-02-17) <<
10 - missing value in DNA PTB Ionization Structur <<
11 - missing GetMaterial() in DNA PTB Excitation <<
12 <<
13 ## 2024-10-02 Hoang Tran (emdna-V11-02-16) <<
14 - Modified the molecule names of OH, HO2, O in <<
15 Each molecule configuration has a molecule d <<
16 <<
17 ## 2024-08-27 Gabriele Cosmo (emdna-V11-02-15) <<
18 - Fixed reported Coverity defects for use of s <<
19 and const iterators. <<
20 <<
21 ## 2024-08-20 Hoang Tran (emdna-V11-02-14) <<
22 - debug invalid a root node of KDTree <<
23 <<
24 ## 2024-08-08 Gabriele Cosmo (emdna-V11-02-13) <<
25 - Fixed reported Coverity defects in G4LEPTSEl <<
26 for explicit null dereferenced pointer and o <<
27 cleanup. <<
28 <<
29 ## 2024-05-23 Hoang Tran (emdna-V11-02-12) <<
30 - Delete enum unused due to te use of EmParame <<
31 to control chemistry models in G4EmDNAChemis <<
32 <<
33 ## 2024-05-11 Gabriele Cosmo (emdna-V11-02-11) <<
34 - Fixed compilation error on macOS/clang with <<
35 of std::function in G4OctreeFinder. <<
36 <<
37 ## 2024-05-06 Gabriele Cosmo (emdna-V11-02-10) <<
38 - Fixed compilation warning on macOS/XCode for <<
39 in G4DNADoubleIonisationModel and G4DNAMulti <<
40 <<
41 ## 2024-04-25 Hoang Tran (emdna-V11-02-09) <<
42 - Delete DelayLists at the end of chemistry st <<
43 - clean the G4Scheduler <<
44 <<
45 ## 2024-04-24 W.G.Shin (emdna-V11-02-08) <<
46 - G4DNAELSEPAElasticModel <<
47 - Modified to be compatible with density sca <<
48 <<
49 ## 2024-04-19 Gabriele Cosmo (emdna-V11-02-07) <<
50 - Fixed compilation error on Windows VC++ with <<
51 Added missing declarations for TG4MoleculeSh <<
52 Based on [GitHub PR#69](https://github.com/G <<
53 <<
54 ## 2024-04-18 Hoang Tran (emdna-V11-02-06) <<
55 - debug invalid KDTree node. <<
56 <<
57 ## 2024-04-15 Vladimir Ivanchenko (emdna-V11-0 <<
58 - G4GeneralIonIonisationModel, G4DNAIonChargeI <<
59 G4DNAIonChargeDecreaseModel - new classes im <<
60 ions heavier than Helium <<
61 - G4DNAChargeDecrease, G4DNAChargeIncrease - r <<
62 min/max model energy inside processes clas <<
63 - G4DNARuddIonisationExtendedModel - updated i <<
64 from the general model <<
65 - source.cmake in models sub-directory become <<
66 both .hh and .cc files <<
67 <<
68 ## 2024-04-10 Shogo Okada (emdna-V11-02-04) <<
69 - G4DNAElectronHoleRecombination <<
70 - Changed the branch condition in FindReacta <<
71 involved in electron-hole recombination <<
72 - G4DNAWaterDissociationDisplacer <<
73 - Added dissociative decay channels for mult <<
74 - G4DNAMultipleIonisationManager <<
75 - New class focusing on generation of multip <<
76 calculation of scale parameter to compute <<
77 multiple-ionization process <<
78 - G4DNADoubleIonisation <<
79 - G4DNATripleIonisation <<
80 - G4DNAQuadrupleIonisation <<
81 - New process classes for multiple-ionizatio <<
82 - G4DNADoubleIonisationModel <<
83 - G4DNATripleIonisationModel <<
84 - G4DNAQuadrupleIonisationModel <<
85 - New model classes related to multiple-ioni <<
86 <<
87 ## 2024-04-05 Vladimir Ivanchenko (emdna-V11-0 <<
88 - G4DNARuddIonisationExtendedModel - updated m <<
89 uppload data in the class constructor once <<
90 effective charge approach for all ions wit <<
91 correct computation of stopping power and <<
92 variables before sampling, optimized algor <<
93 becomes ~10 times faster), removed unused <<
94 <<
95 ## 2024-02-29 Hoang Tran (emdna-V11-02-02) <<
96 - correct verbose conditions for warning in IR <<
97 <<
98 ## 2024-02-24 Hoang Tran (emdna-V11-02-01) <<
99 - Optimize IRT-syn at 1 ps for high LET applic <<
100 <<
101 ## 2023-12-15 Vladimir Ivanchenko (emdna-V11-0 <<
102 - G4DNABornAngle - fixed numerical problem: ad <<
103 use relativistic formula for max energy tr <<
104 <<
105 ## 2023-11-14 Ben Morgan (emdna-V11-01-25) <<
106 - Use G4FindDataDir to access data libraries i <<
107 <<
108 ## 2023-11-11 Hoang Tran (emdna-V11-01-24) <<
109 - correct fastercode section for dna opt6 <<
110 <<
111 ## 2023-10-12 Hoang Tran (emdna-V11-01-23) <<
112 - correct scavenger counter for oxygen <<
113 <<
114 ## 2023-10-11 Hoang Tran (emdna-V11-01-22) <<
115 - Fixed the K shell bug in G4DNARuddIonisation <<
116 <<
117 ## 2023-10-10 Hoang Tran (emdna-V11-01-21) <<
118 - improved equilibrium processes, introduced G <<
119 <<
120 ## 2023-09-04 Gabriele Cosmo (emdna-V11-01-20) <<
121 - In navigation classes, removed references to <<
122 which is now deprecated. <<
123 <<
124 ## 2023-08-31 Gabriele Cosmo (emdna-V11-01-19) <<
125 - Removed references to unused G4GRSSolid and <<
126 <<
127 ## 2023-08-29 (emdna-V11-01-18) <<
128 - Fix minor/obvious Coverity issues <<
129 <<
130 ## 2023-07-21 Ben Morgan (emdna-V11-01-17) <<
131 - Apply core clang-tidy fixes plus those for <<
132 - Cons/destructor modernization <<
133 - Readability and logic for conditionals/boo <<
134 <<
135 ## 2023-07-12 Ben Morgan (emdna-V11-01-16) <<
136 - Apply patch from [GitHub PR 58](https://gith <<
137 - Use std::erfc to avoid precision loss <<
138 - Remove unused header <<
139 <<
140 ## 2023-06-10 Hoang Tran (emdna-V11-01-15) <<
141 - minor correction for DNA material in option6 <<
142 <<
143 ## 2023-06-09 Hoang Tran (emdna-V11-01-14) <<
144 - use analytical method for DNA material in op <<
145 <<
146 ## 2023-06-03 Vladimir Ivanchenko (emdna-V11-0 <<
147 - G4DNARuddIonisationExtendedModel - model re- <<
148 threads, applicable for scaled energy interv <<
149 an ion data is not available proton x-sectio <<
150 used, sampling of delta-electron is done usi <<
151 <<
152 ## 2023-05-25 Hoang Tran (emdna-V11-01-12) <<
153 - Modified DNA cross section file name to new <<
154 <<
155 ## 2023-05-19 Hoang Tran (emdna-V11-01-11) <<
156 - Add DNA cross section to dna_option6 <<
157 <<
158 ## 2023-05-17 Hoang Tran (emdna-V11-01-10) <<
159 - Fix Compilation warnings on XCode <<
160 <<
161 ## 2023-05-04 Hoang Tran (emdna-V11-01-09) <<
162 - correct the initial values of G4DNAEventSche <<
163 <<
164 ## 2023-04-28 Hoang Tran (emdna-V11-01-08) <<
165 - add time structure (pulsed beam) to water ra <<
166 <<
167 ## 2023-04-26 Hoang Tran (emdna-V11-01-07) <<
168 - correct KDTree bug <<
169 <<
170 ## 2023-03-24 Hoang Tran (emdna-V11-01-06) <<
171 - icsd physicslist: deleted unused model, <<
172 - Apdated RegisterModel function with new stru <<
173 - added model data to G4DNAMaterialManager sin <<
174 <<
175 ## 2023-03-08 Gabriele Cosmo (emdna-V11-01-05) <<
176 - Fixed compilation warning on macOS/XCode for <<
177 in G4DNAVacuumModel::Initialise(). <<
178 <<
179 ## 2023-02-09 Hoang Tran (emdna-V11-01-04) <<
180 - Introduced G4DNAMaterialManager to manage av <<
181 and keeps DNA cross section data in one thread <<
182 - minor change in G4VDNAModel <<
183 <<
184 ## 2023-01-27 Hoang Tran (emdna-V11-01-03) <<
185 - reorganize multiple material model of PTB mo <<
186 G4VDNAModel plays like a data layer for multip <<
187 The concrete models are independent of G4DNAMo <<
188 <<
189 ## 2023-01-17 Hoang Tran (emdna-V11-01-02) <<
190 - replaced string to material index and clean <<
191 G4DNAPTBIonisationModel, G4DNAPTBElasticModel, <<
192 G4DNAPTBExcitationStructure) - PTB models <<
193 - added material pointer members for each conc <<
194 - removed unused objects (G4DataVector()) <<
195 <<
196 ## 2023-01-06 Hoang Tran (emdna-V11-01-01) <<
197 - clean G4DNAModelInterface file for the model <<
198 <<
199 ## 2022-12-12 Hoang Tran (emdna-V11-01-00) <<
200 - fix coverity of G4DNARuddIonisationExtendedM <<
201 (Uninitialized scalar variable) from cand1 ana <<
202 <<
203 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-0 9 ## 2022-11-24 Vladimir Ivanchenko (emdna-V11-00-39)
204 - G4DNARuddIonisationExtendedModel - fixed com 10 - G4DNARuddIonisationExtendedModel - fixed common work between DNA physics and
205 radioactive decay module - before this upd << 11 radioactive decay module - before this update test2.in macro crash, because
206 only 5 ions have data needed for this mode 12 only 5 ions have data needed for this model; with this modification of the
207 model scaling relation to the carbon ion i 13 model scaling relation to the carbon ion is used for any ion, which has
208 no data; low-energy limit is used now more << 14 no data; low-energy limit is used now more correctly - all ions are stopped
209 but not killed, because they may have radi 15 but not killed, because they may have radioactive decay at rest; all commented
210 lines are removed from the class 16 lines are removed from the class
211 17
212 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38) 18 ## 2022-11-23 Gabriele Cosmo (emdna-V11-00-38)
213 - Fixed more compilation warnings for implicit 19 - Fixed more compilation warnings for implicit type conversions.
214 20
215 ## 2022-11-22 Hoang Tran (emdna-V11-00-37) 21 ## 2022-11-22 Hoang Tran (emdna-V11-00-37)
216 - delete unused tests in dna (G4DNAProcessTest 22 - delete unused tests in dna (G4DNAProcessTest.cc and G4DNATest.cc)
217 23
218 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36) 24 ## 2022-11-18 Gabriele Cosmo (emdna-V11-00-36)
219 - Fixed compilation warnings for implicit type 25 - Fixed compilation warnings for implicit type conversions on macOS/XCode 14.1.
220 26
221 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-0 27 ## 2022-11-08 Vladimir Ivanchenko (emdna-V11-00-35)
222 - G4DNAUeharaScreenedRutherfordElasticModel - << 28 - G4DNAUeharaScreenedRutherfordElasticModel - code cleanup; introduced
223 low and high energy limit for the model; r 29 low and high energy limit for the model; removed missleading G4Exception
224 30
225 ## 2022-11-01 Hoang Tran (emdna-V11-00-34) 31 ## 2022-11-01 Hoang Tran (emdna-V11-00-34)
226 - Fix Coverity issues for ref-09 32 - Fix Coverity issues for ref-09
227 33
228 ## 2022-10-10 Hoang Tran (emdna-V11-00-33) 34 ## 2022-10-10 Hoang Tran (emdna-V11-00-33)
229 - minor correction of IRT-syn model (chemistry 35 - minor correction of IRT-syn model (chemistry). Contact reactions should not happen
230 after 1 ps. 36 after 1 ps.
231 37
232 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna- 38 ## 2022-10-21 Yann Perrot, Le Tuan Anh (emdna-V11-00-32)
233 - Add nitrogen models from PTra code 39 - Add nitrogen models from PTra code
234 40
235 ## 2022-10-10 Hoang Tran (emdna-V11-00-31) 41 ## 2022-10-10 Hoang Tran (emdna-V11-00-31)
236 - Fixed minor mistake of file name in G4DNARPW 42 - Fixed minor mistake of file name in G4DNARPWBAIonisationModel,
237 - Added protection for HighEnergyLimit/LowEner 43 - Added protection for HighEnergyLimit/LowEnergyLimit in G4DNARPWBAIonisationModel and
238 G4DNARPWBAExcitationModel 44 G4DNARPWBAExcitationModel
239 45
240 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30) 46 ## 2022-10-07 Gabriele Cosmo (emdna-V11-00-30)
241 - Fixed compilation warnings on Intel/icx comp 47 - Fixed compilation warnings on Intel/icx compiler for variables set
242 but not used in G4ITNavigator2. 48 but not used in G4ITNavigator2.
243 49
244 ## 2022-10-05 Hoang Tran (emdna-V11-00-29) 50 ## 2022-10-05 Hoang Tran (emdna-V11-00-29)
245 - Fix user's report for IRT model. 51 - Fix user's report for IRT model.
246 If the first IRTSampling won't give any rea 52 If the first IRTSampling won't give any reactions, end the simu. No StepProcessor in this simu
247 53
248 ## 2022-10-03 Hoang Tran (emdna-V11-00-28) 54 ## 2022-10-03 Hoang Tran (emdna-V11-00-28)
249 - Fix Coverity static analysis for ref-08 55 - Fix Coverity static analysis for ref-08
250 uninit_member in G4DNAMillerGreenExcitationMo 56 uninit_member in G4DNAMillerGreenExcitationModel, G4DNARuddIonisationModel, G4DNADingfelderChargeDecreaseModel,
251 G4DNADingfelderChargeIncreaseModel,G4DNARuddI 57 G4DNADingfelderChargeIncreaseModel,G4DNARuddIonisationExtendedModel, G4DNAGillespieDirectMethod
252 Use auto & instead of auto : G4ITFinder, G4DN 58 Use auto & instead of auto : G4ITFinder, G4DNAScavengerMaterial, G4MoleculeCounter, G4OCTREE
253 59
254 ## 2022-09-08 Hoang Tran (emdna-V11-00-27) 60 ## 2022-09-08 Hoang Tran (emdna-V11-00-27)
255 - Resolve dependency inconsistencies : 61 - Resolve dependency inconsistencies :
256 dna/management/include/G4ChemicalMoleculeF 62 dna/management/include/G4ChemicalMoleculeFinder.hh includes G4Molecule.hh from G4emdna-molman
257 dna/management/include/G4UserMeshAction.hh 63 dna/management/include/G4UserMeshAction.hh includes G4DNAMesh.hh from G4emdna-utils
258 dna/management/include/G4OctreeFinder.hh i 64 dna/management/include/G4OctreeFinder.hh includes G4IRTUtils.hh from G4emdna-utils
259 65
260 ## 2022-09-05 Ben Morgan (emdna-V11-00-26) 66 ## 2022-09-05 Ben Morgan (emdna-V11-00-26)
261 - Partially resolve dependency inconsistencies 67 - Partially resolve dependency inconsistencies
262 - NB: cannot be resolved fully without intro 68 - NB: cannot be resolved fully without introducing a cycle between
263 G4emdna-man, G4emdna-molman, G4emdna-utils 69 G4emdna-man, G4emdna-molman, G4emdna-utils.
264 70
265 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25) 71 ## 2022-09-01 Seth R Johnson (emdna-V11-00-25)
266 - Define G4CT_MAX_COUNT for changing "compile 72 - Define G4CT_MAX_COUNT for changing "compile time counter" depth to fix build
267 errors on NVHPC compiler. 73 errors on NVHPC compiler.
268 74
269 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-0 75 ## 2022-08-30 Vladimir Ivanchenko (emdna-V11-00-24)
270 - G4DNAExcitation, G4DNAVibExcitation, G4DNARo << 76 - G4DNAExcitation, G4DNAVibExcitation, G4DNARotExcitation - class
271 cleanup according to the recent G4VEmProce 77 cleanup according to the recent G4VEmProcess base class; model
272 headers are moved to source; C++11 keyward << 78 headers are moved to source; C++11 keywards are introduced.
273 79
274 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23) 80 ## 2022-06-21 Igor Semeniouk (emdna-V11-00-23)
275 - G4DNABornIonisationModel1.cc, G4DNACPA100Ela 81 - G4DNABornIonisationModel1.cc, G4DNACPA100ElasticModel.cc,
276 G4DNACPA100IonisationModel.cc, G4DNAChampion 82 G4DNACPA100IonisationModel.cc, G4DNAChampionElasticModel.cc,
277 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglo 83 G4DNAELSEPAElasticModel.cc, G4DNAEmfietzoglouIonisationModel.cc,
278 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonEx 84 G4DNAIonElasticModel.cc, G4DNAQuinnPlasmonExcitationModel.cc,
279 G4DNARPWBAIonisationModel.cc, G4DNARelativis 85 G4DNARPWBAIonisationModel.cc, G4DNARelativisticIonisationModel.cc,
280 G4DNASancheExcitationModel.cc : 86 G4DNASancheExcitationModel.cc :
281 use G4FindDataDir("G4LEDATA") to find datase 87 use G4FindDataDir("G4LEDATA") to find dataset path on place of getenv.
282 88
283 ## 2022-06-03 Hoang Tran (emdna-V11-00-22) 89 ## 2022-06-03 Hoang Tran (emdna-V11-00-22)
284 - correct DNA ion definitions in G4DNARuddIoni 90 - correct DNA ion definitions in G4DNARuddIonisationExtendedModel.
285 91
286 ## 2022-06-01 Hoang Tran (emdna-V11-00-21) 92 ## 2022-06-01 Hoang Tran (emdna-V11-00-21)
287 - G4Octree : fixed Coverity warning. 93 - G4Octree : fixed Coverity warning.
288 94
289 ## 2022-05-24 Hoang Tran (emdna-V11-00-20) 95 ## 2022-05-24 Hoang Tran (emdna-V11-00-20)
290 - update data structure to improve performance 96 - update data structure to improve performance of the mesoscopic model.
291 97
292 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19) 98 ## 2022-05-18 Gabriele Cosmo (emdna-V11-00-19)
293 - G4ITTransportation: fixed misuse of bitwise 99 - G4ITTransportation: fixed misuse of bitwise '|' operator instead of logical.
294 100
295 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18) 101 ## 2022-05-12 Sergio Losilla (emdna-V11-00-18)
296 - Added missing headers. 102 - Added missing headers.
297 103
298 ## 2022-05-11 Hoang Tran (emdna-V11-00-17) 104 ## 2022-05-11 Hoang Tran (emdna-V11-00-17)
299 - change the scavenging filter of the IRT beyo 105 - change the scavenging filter of the IRT beyond 1 us proposed by Naoki and Jose
300 106
301 ## 2022-05-02 Hoang Tran (emdna-V11-00-16) 107 ## 2022-05-02 Hoang Tran (emdna-V11-00-16)
302 - Add localthread for fUse of G4VMoleculeCount 108 - Add localthread for fUse of G4VMoleculeCounter
303 109
304 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoa 110 ## 2022-04-27 Miguel A. Cortes-Giraldo and Hoang Tran (emdna-V11-00-15)
305 - Incorporation of model based on RPWBA to tra 111 - Incorporation of model based on RPWBA to transport protons at 100-300 MeV.
306 - Added G4DNARPWBAExcitationModel, G4DNARPWBAI 112 - Added G4DNARPWBAExcitationModel, G4DNARPWBAIonisationModel.
307 113
308 ## 2022-04-25 Hoang Tran (emdna-V11-00-14) 114 ## 2022-04-25 Hoang Tran (emdna-V11-00-14)
309 - add UserBrownianAction in G4DNABrownianTrans 115 - add UserBrownianAction in G4DNABrownianTransportation and
310 G4DNAMolecularDissociation 116 G4DNAMolecularDissociation
311 - replace G4int by int64_t for width integer t 117 - replace G4int by int64_t for width integer types
312 - add fResetScavenger in G4SchedulerMessenger 118 - add fResetScavenger in G4SchedulerMessenger
313 119
314 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13) 120 ## 2022-04-14 Paolo Dondero (emdna-V11-00-13)
315 - save local instances for recurrent access to << 121 - save local instances for recurrent access to particle definition in
316 G4DNAMillerGreenExcitationModel, G4DNARuddIo 122 G4DNAMillerGreenExcitationModel, G4DNARuddIonisationExtendedModel and
317 G4DNARuddIonisationModel 123 G4DNARuddIonisationModel
318 - use G4Pow and G4Log instead of std::pow and 124 - use G4Pow and G4Log instead of std::pow and std::log
319 - inside G4DNARuddIonisationExtendedModel comm 125 - inside G4DNARuddIonisationExtendedModel commented out ions that are not
320 inside G4DNAGenericIonsManager 126 inside G4DNAGenericIonsManager
321 127
322 ## 2022-04-14 Hoang Tran (emdna-V11-00-12) 128 ## 2022-04-14 Hoang Tran (emdna-V11-00-12)
323 - Debug the report #2235 which might be relate 129 - Debug the report #2235 which might be related to KDtree algorithm
324 - Clean code 130 - Clean code
325 - Delete G4ITFinder.cc 131 - Delete G4ITFinder.cc
326 132
327 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11) 133 ## 2022-04-04 Paolo Dondero (emdna-V11-00-11)
328 - save local instances for recurrent access to << 134 - save local instances for recurrent access to particle definition in
329 G4DNADingfelderChargeDecreaseModel and G4DNADi 135 G4DNADingfelderChargeDecreaseModel and G4DNADingfelderChargeIncreaseModel
330 - use G4Pow and G4Log instead of std::pow and 136 - use G4Pow and G4Log instead of std::pow and std::log
331 137
332 ## 2022-03-18 SI (emdna-V11-00-10) 138 ## 2022-03-18 SI (emdna-V11-00-10)
333 - add protection in G4DNACPA100IonisationModel 139 - add protection in G4DNACPA100IonisationModel for cum. xs interpolation
334 140
335 ## 2022-03-15 Hoang Tran (emdna-V11-00-09) 141 ## 2022-03-15 Hoang Tran (emdna-V11-00-09)
336 - remove macro commands to control the chemist 142 - remove macro commands to control the chemistry models in G4SchedulerMessenger
337 (creating models in G4SchedulerMessenger can m 143 (creating models in G4SchedulerMessenger can make circular dependency problems)
338 - add flag OctreeFinder in IRT_syn's Initializ 144 - add flag OctreeFinder in IRT_syn's Initialize()
339 145
340 ## 2022-03-04 Hoang Tran (emdna-V11-00-08) 146 ## 2022-03-04 Hoang Tran (emdna-V11-00-08)
341 - add macro commands to control the chemistry 147 - add macro commands to control the chemistry models,
342 parameters including the chemical molecules an 148 parameters including the chemical molecules and reaction list involved in the radiolysis
343 149
344 ## 2022-02-18 Hoang Tran (emdna-V11-00-07) 150 ## 2022-02-18 Hoang Tran (emdna-V11-00-07)
345 - optimize IRT-syn model, use reaction radius 151 - optimize IRT-syn model, use reaction radius and reaction type from the reaction table
346 - delete G4VReactionType, G4DNAReactionTypeMan 152 - delete G4VReactionType, G4DNAReactionTypeManager, G4DNATotallyDiffusionControlled,
347 G4DNAPartiallyDiffusionControlled 153 G4DNAPartiallyDiffusionControlled
348 - delete G4DNAIRT_geomtries 154 - delete G4DNAIRT_geomtries
349 155
350 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06) 156 ## 2022-02-17 Jonas Hahnfeld (emdna-V11-00-06)
351 - `G4ITTransportation`: Make `PrepareState` mo 157 - `G4ITTransportation`: Make `PrepareState` more function-like, expect semicolon
352 - `G4DNAPolyNucleotideReactionProcess`: 158 - `G4DNAPolyNucleotideReactionProcess`:
353 - Move `PrepareState` and `State` macros int 159 - Move `PrepareState` and `State` macros into `.cc` file
354 - Make `PrepareState` more function-like, ex 160 - Make `PrepareState` more function-like, expect semicolon
355 - Move variable `pMoleculeA` under `G4VERBOS 161 - Move variable `pMoleculeA` under `G4VERBOSE`
356 162
357 ## 2022-02-10 Hoang Tran (emdna-V11-00-05) 163 ## 2022-02-10 Hoang Tran (emdna-V11-00-05)
358 - add the condition of water material for the 164 - add the condition of water material for the OUTSIDE_OF_MOTHER_VOLUME
359 warning in G4DNAMolecularDissociation::DecayIt 165 warning in G4DNAMolecularDissociation::DecayIt()
360 166
361 ## 2022-02-3 Hoang Tran (emdna-V11-00-04) 167 ## 2022-02-3 Hoang Tran (emdna-V11-00-04)
362 - modify the macro in G4Molecule.cc and G4ITTy 168 - modify the macro in G4Molecule.cc and G4ITType.hh for linker problems on Windows
363 169
364 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03) 170 ## 2022-01-18 Jonas Hahnfeld (emdna-V11-00-03)
365 - Prefer pointer to `const G4Material` if poss 171 - Prefer pointer to `const G4Material` if possible
366 172
367 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02) 173 ## 2022-01-17 Jonas Hahnfeld (emdna-V11-00-02)
368 - Remove useless `const_cast` of `G4VSensitive 174 - Remove useless `const_cast` of `G4VSensitiveDetector`
369 175
370 ## 2021-12-23 Hoang Tran (emdna-V11-00-01) 176 ## 2021-12-23 Hoang Tran (emdna-V11-00-01)
371 - add G4DNAPolyNucleotideReactionProcess, G4VD 177 - add G4DNAPolyNucleotideReactionProcess, G4VDNAHitModel
372 files for DNA damage applications 178 files for DNA damage applications
373 179
374 ## 2021-12-10 Ben Morgan (emdna-V11-00-00) 180 ## 2021-12-10 Ben Morgan (emdna-V11-00-00)
375 - Change to new Markdown History format 181 - Change to new Markdown History format
376 182
377 --- 183 ---
378 184
379 # History entries prior to 11.0 185 # History entries prior to 11.0
380 186
381 8-11-2021, H. Tran, emdna-V10-07-15 187 8-11-2021, H. Tran, emdna-V10-07-15
382 - corrected Circular dependencies for mesoscop 188 - corrected Circular dependencies for mesoscopic model
383 - corrected the problem in IRT 189 - corrected the problem in IRT
384 190
385 4-11-2021, H. Tran, emdna-V10-07-14 191 4-11-2021, H. Tran, emdna-V10-07-14
386 - define a G4FakeParticleID::fLastValue in the 192 - define a G4FakeParticleID::fLastValue in the header file,
387 delete G4FakeParticleID.cc, 193 delete G4FakeParticleID.cc,
388 solve arithmetic problems, 194 solve arithmetic problems,
389 Added new mesoscopic model for dna chemistry 195 Added new mesoscopic model for dna chemistry
390 196
391 21-10-2021, W.G.Shin, emdna-V10-07-13 197 21-10-2021, W.G.Shin, emdna-V10-07-13
392 - Added a virtual classes for DNA geometry - G 198 - Added a virtual classes for DNA geometry - G4VDNAMolecularGeometry
393 Modified classes - G4DNAIRT, G4DNAIRTMolecul 199 Modified classes - G4DNAIRT, G4DNAIRTMoleculeEncounterStepper,
394 G4ITModelProcessor, G4Sch 200 G4ITModelProcessor, G4Scheduler,
395 G4DNAMolecularReactionTab 201 G4DNAMolecularReactionTable
396 202
397 23-09-2021, A. Ribon, emdna-V10-07-12 203 23-09-2021, A. Ribon, emdna-V10-07-12
398 - G4ITTransportation, G4DNAElastic, G4DNAExcit 204 - G4ITTransportation, G4DNAElastic, G4DNAExcitation, G4DNAIonisation,
399 G4DNAVibExcitation, G4DNAAttachment, G4DNACh << 205 G4DNAVibExcitation, G4DNAAttachment, G4DNAChargeDecrease,
400 G4DNAChargeIncrease, G4DNAElectronSolvation, 206 G4DNAChargeIncrease, G4DNAElectronSolvation, G4DNAMolecularDissociation,
401 G4DNASecondOrderReaction, G4DNAElectronHoleR 207 G4DNASecondOrderReaction, G4DNAElectronHoleRecombination,
402 G4DNABrownianTransportation : replaced hardw 208 G4DNABrownianTransportation : replaced hardwired process-sub-types
403 with enum values introduced in the new class 209 with enum values introduced in the new class G4LowEnergyEmProcessSubType
404 210
405 18-07-2021, V. Ivanchenko, emdna-V10-07-11 211 18-07-2021, V. Ivanchenko, emdna-V10-07-11
406 - G4DNABohrExcitationModel2, G4DNABohrIonisati << 212 - G4DNABohrExcitationModel2, G4DNABohrIonisationModel2,
407 G4VLEPSModel - updated interfaces to G4Physi 213 G4VLEPSModel - updated interfaces to G4PhysicsVector
408 214
409 16-07-2021, D. Sakata, emdna-V10-07-10 215 16-07-2021, D. Sakata, emdna-V10-07-10
410 - Fixed initialization error in G4DNAELSEPAEla << 216 - Fixed initialization error in G4DNAELSEPAElasticModel
411 217
412 28-06-2021, G. Cosmo, emdna-V10-07-09 218 28-06-2021, G. Cosmo, emdna-V10-07-09
413 - Fixed compilation error in G4ITMultiNavigato 219 - Fixed compilation error in G4ITMultiNavigator when compiling with c++20
414 enabled. 220 enabled.
415 221
416 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07 222 31-05-2021, D.Sakata S. Guatelli, emdna-V10-07-08
417 - Added new classes G4DNADiracRMatrixExcitatio 223 - Added new classes G4DNADiracRMatrixExcitationModel
418 G4DNAQuinnPlasmonExcitatio 224 G4DNAQuinnPlasmonExcitationModel
419 G4DNARelativisticIonisatio 225 G4DNARelativisticIonisationModel
420 G4DNAPlasmonExcitation 226 G4DNAPlasmonExcitation
421 - Modified G4DNAELSEPAElasticModel for gold 227 - Modified G4DNAELSEPAElasticModel for gold
422 228
423 9-05-2021, H.Tran, tag emdna-V10-07-07 229 9-05-2021, H.Tran, tag emdna-V10-07-07
424 - Add IRT-syn model 230 - Add IRT-syn model
425 231
426 16-04-2021, B.Morgan, tag emdna-V10-07-06 232 16-04-2021, B.Morgan, tag emdna-V10-07-06
427 - Migrate build to modular CMake API 233 - Migrate build to modular CMake API
428 234
429 27-04-2021, H.Tran, tag emdna-V10-07-05 235 27-04-2021, H.Tran, tag emdna-V10-07-05
430 - G4DNAElectronHoleRecombination: added Octree 236 - G4DNAElectronHoleRecombination: added OctreeFinder
431 - G4DNABrownianTransportation: modified AlongS 237 - G4DNABrownianTransportation: modified AlongStepDoIt
432 - added OctreeFinder and IRTUtils 238 - added OctreeFinder and IRTUtils
433 239
434 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04 240 26-04-2021, V.Ivanchenko, tag emdna-V10-07-04
435 - G4DNABornAngle, G4DNARuddAngle - updated pri 241 - G4DNABornAngle, G4DNARuddAngle - updated print method
436 242
437 12-03-2021, L.Pandola, tag emdna-V10-07-03 243 12-03-2021, L.Pandola, tag emdna-V10-07-03
438 - Move DNA-related Unit Tests from lowenergy/t 244 - Move DNA-related Unit Tests from lowenergy/tests to dna/test
439 245
440 24-02-2021, G.Cosmo, tag emdna-V10-07-02 246 24-02-2021, G.Cosmo, tag emdna-V10-07-02
441 - Fixed dependency on g4tools, now moved to ex 247 - Fixed dependency on g4tools, now moved to externals module.
442 248
443 16-02-2021, W.G.Shin, tag emdna-V10-07-01 249 16-02-2021, W.G.Shin, tag emdna-V10-07-01
444 - G4DNAElectronHoleRecombination 250 - G4DNAElectronHoleRecombination
445 Dissociation channel of electron-hole recomb 251 Dissociation channel of electron-hole recombination moved to
446 G4EmDNAChemistry, _option1, _option2, _optio 252 G4EmDNAChemistry, _option1, _option2, _option3
447 - G4DNAWaterDissociationDisplacer 253 - G4DNAWaterDissociationDisplacer
448 Added the fragment displacement for new diss 254 Added the fragment displacement for new dissociation channel
449 255
450 29-10-2020, G.Cosmo, tag emdna-V10-06-12 256 29-10-2020, G.Cosmo, tag emdna-V10-06-12
451 - Fix thread contention on mutable data in G4D 257 - Fix thread contention on mutable data in G4DNAMolecularMaterial; might
452 help resolving observed crashes in MT runs. 258 help resolving observed crashes in MT runs.
453 Some code cleanup. 259 Some code cleanup.
454 260
455 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11 261 27-10-2020, V.Ivanchenko, tag emdna-V10-06-11
456 - G4DNAMolecularMaterial - removed commented l 262 - G4DNAMolecularMaterial - removed commented lines
457 - History file fixed 263 - History file fixed
458 264
459 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10 265 25-10-2020, V.Ivanchenko, tag emdna-V10-06-10
460 - G4DNAMolecularMaterial - attempt to fix nigh 266 - G4DNAMolecularMaterial - attempt to fix nightly problems
461 in chem6 example - do not delete instance of 267 in chem6 example - do not delete instance of the singleton
462 268
463 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09 269 24-10-2020, I. Hrivnacova, tag emdna-V10-06-09
464 - Added dependency on analysis/g4tools in GNUm 270 - Added dependency on analysis/g4tools in GNUmakefile,
465 required after analysis update (analysis-V10 271 required after analysis update (analysis-V10-06-05)
466 272
467 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 273 12-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-08
468 - Fixed coverity warning 274 - Fixed coverity warning
469 275
470 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10 276 10-06-2020, S.Incerti, W.G.Shin, tag emdna-V10-06-07
471 - Fixed coverity warnings 277 - Fixed coverity warnings
472 - Fix of IRT bug 278 - Fix of IRT bug
473 (protection for the crash induced by empty re 279 (protection for the crash induced by empty reaction set)
474 280
475 28-05-2020, B.Morgan, tag emdna-V10-06-06 281 28-05-2020, B.Morgan, tag emdna-V10-06-06
476 - Add missing G4analysismng module dependency 282 - Add missing G4analysismng module dependency to G4emdna-utils
477 283
478 20-05-20: W.G.Shin emdna-V10-06-05 284 20-05-20: W.G.Shin emdna-V10-06-05
479 - Revised displacement of OH radicals of B1A1 285 - Revised displacement of OH radicals of B1A1 dissociation
480 based on momentum conservation in G4DNAWaterDi 286 based on momentum conservation in G4DNAWaterDissociationDisplacer class
481 - Added missing History 287 - Added missing History
482 288
483 26-04-20: W.G.Shin emdna-V10-06-04 289 26-04-20: W.G.Shin emdna-V10-06-04
484 - Fixed coverity test 290 - Fixed coverity test
485 291
486 15-04-20: G.Cosmo emdna-V10-06-03 292 15-04-20: G.Cosmo emdna-V10-06-03
487 - G4MoleculeDefinition: copy constructor and a 293 - G4MoleculeDefinition: copy constructor and assignment operator
488 are not allowed (as for G4ParticleDefinition 294 are not allowed (as for G4ParticleDefinition). Now deleted.
489 295
490 19-02-20: W.G.Shin emdna-V10-06-02 296 19-02-20: W.G.Shin emdna-V10-06-02
491 - Fixed memory issue on G4DNAMolecularReaction 297 - Fixed memory issue on G4DNAMolecularReactionTable
492 - Revised headeres of IRT classes 298 - Revised headeres of IRT classes
493 299
494 12-02-20: W.G.Shin emdna-V10-06-01 300 12-02-20: W.G.Shin emdna-V10-06-01
495 - Added protections floating point exception i 301 - Added protections floating point exception in G4DNAIRT class
496 302
497 10-01-20: W.G.Shin emdna-V10-06-00 303 10-01-20: W.G.Shin emdna-V10-06-00
498 - Added classes for IRT 304 - Added classes for IRT
499 - Added features in management classes for IRT 305 - Added features in management classes for IRT (G4ITReaction,
500 G4ITModelProcessor ...) 306 G4ITModelProcessor ...)
501 - Added features in G4DNAMolecularReactionTabl 307 - Added features in G4DNAMolecularReactionTable for GFDE
502 - Added molecules of Plante et al. (2017) (Oxy 308 - Added molecules of Plante et al. (2017) (Oxygen, O2, O3, HO2)
503 309
504 15-11-19: G.Cosmo emdna-V10-05-11 310 15-11-19: G.Cosmo emdna-V10-05-11
505 - Fixed cases of implicit type conversions fro 311 - Fixed cases of implicit type conversions from size_t to G4int.
506 312
507 8-11-19: HT, tag emdna-V10-05-10 313 8-11-19: HT, tag emdna-V10-05-10
508 - Fixed the exception divide by zero of diffus 314 - Fixed the exception divide by zero of diffusionCoefficient in
509 G4DNABrownianTransportation::AlongStepGetPhysi 315 G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength
510 for the case of static molecules (DNA) (diffus 316 for the case of static molecules (DNA) (diffusionCoefficient = 0)
511 317
512 24-10-19: J.Apostolakis, tag emdna-V10-05-09 318 24-10-19: J.Apostolakis, tag emdna-V10-05-09
513 - Enabled G4ItNavigator{1,2} to flag if it enc 319 - Enabled G4ItNavigator{1,2} to flag if it encounters new type
514 of external physical volume (meant for adapt 320 of external physical volume (meant for adapting external navigators)
515 321
516 19-10-19: WGS, SI, tag emdna-V10-05-08 322 19-10-19: WGS, SI, tag emdna-V10-05-08
517 - Added new model G4DNAELSEPAElasticModel 323 - Added new model G4DNAELSEPAElasticModel
518 324
519 11-10-19: WGS, SI, tag emdna-V10-05-07 325 11-10-19: WGS, SI, tag emdna-V10-05-07
520 - G4DNAOneStepThermalizationModel.* : 326 - G4DNAOneStepThermalizationModel.* :
521 added Kreipl and Meesungnoen amorphous ice mod 327 added Kreipl and Meesungnoen amorphous ice models
522 - G4DNAWaterDissociationDisplacer* : updated 328 - G4DNAWaterDissociationDisplacer* : updated
523 329
524 03-06-2019, MK, tag emdna-V10-05-06 330 03-06-2019, MK, tag emdna-V10-05-06
525 - Fix GCC9 warnings 331 - Fix GCC9 warnings
526 332
527 26-03-2019, HT, tag emdna-V10-05-05 333 26-03-2019, HT, tag emdna-V10-05-05
528 - Added G4DNAMolecule 334 - Added G4DNAMolecule
529 335
530 10-03-2019, MK, tag emdna-V10-05-04 336 10-03-2019, MK, tag emdna-V10-05-04
531 - Fix reaction site issue 337 - Fix reaction site issue
532 - Chemistry: clarify pointer ownership, clean 338 - Chemistry: clarify pointer ownership, clean code
533 339
534 11-03-2019, G.Cosmo, tag emdna-V10-05-03 340 11-03-2019, G.Cosmo, tag emdna-V10-05-03
535 - Fixed typos in printouts in G4MolecularConfi 341 - Fixed typos in printouts in G4MolecularConfiguration, G4VITRestDiscreteProcess,
536 G4VITRestProcess, G4DNAElectronHoleRecombina 342 G4VITRestProcess, G4DNAElectronHoleRecombination.
537 343
538 18-01-2019, HT, tag emdna-V10-05-02 344 18-01-2019, HT, tag emdna-V10-05-02
539 - Transformed the exception into warning in G4 345 - Transformed the exception into warning in G4DNAMolecularDissociation
540 346
541 28-12-2018, MK, tag emdna-V10-05-01 347 28-12-2018, MK, tag emdna-V10-05-01
542 DEV-300 : G4DNAChemistryManager clarify pointe 348 DEV-300 : G4DNAChemistryManager clarify pointer ownership
543 349
544 05-01-2019, HT, tag emdna-V10-05-00 350 05-01-2019, HT, tag emdna-V10-05-00
545 - moved the checking position of track status 351 - moved the checking position of track status
546 in G4ITStepProcessor::SetInitialStep() 352 in G4ITStepProcessor::SetInitialStep()
547 353
548 01-09-2018, SI, tag emdna-V10-04-10 354 01-09-2018, SI, tag emdna-V10-04-10
549 renamed tag 355 renamed tag
550 356
551 01-09-2018, SI, tag emdna-v10-04-09 357 01-09-2018, SI, tag emdna-v10-04-09
552 - bugzilla 2084 358 - bugzilla 2084
553 https://bugzilla-geant4.kek.jp/show_bug.cgi?id 359 https://bugzilla-geant4.kek.jp/show_bug.cgi?id=2084
554 360
555 30-07-2018, SI, tag emdna-V10-04-08 361 30-07-2018, SI, tag emdna-V10-04-08
556 - included upper energy limit of models (2) 362 - included upper energy limit of models (2)
557 363
558 29-07-2018, SI, tag emdna-V10-04-07 364 29-07-2018, SI, tag emdna-V10-04-07
559 - included upper energy limit of models 365 - included upper energy limit of models
560 366
561 01-07-2018, SI, tag emdna-V10-04-06 367 01-07-2018, SI, tag emdna-V10-04-06
562 - added protection in Auger emission 368 - added protection in Auger emission
563 369
564 30-06-2018, MS, ZF, SI tag emdna-V10-04-05 370 30-06-2018, MS, ZF, SI tag emdna-V10-04-05
565 - updated Si mass in G4DNAGenericIonsManager 371 - updated Si mass in G4DNAGenericIonsManager
566 372
567 22-06-2018, SI tag emdna-V10-04-04 373 22-06-2018, SI tag emdna-V10-04-04
568 - fixed warnings in lepts models 374 - fixed warnings in lepts models
569 375
570 14-05-2018, SI tag emdna-V10-04-03 376 14-05-2018, SI tag emdna-V10-04-03
571 - chemistry update by Mathieu 377 - chemistry update by Mathieu
572 378
573 01-05-2018, SI tag emdna-V10-04-02 379 01-05-2018, SI tag emdna-V10-04-02
574 - chemistry update by Mathieu 380 - chemistry update by Mathieu
575 381
576 09-02-2018, M.Asai tag emdna-V10-04-01 382 09-02-2018, M.Asai tag emdna-V10-04-01
577 - G4DNAMolecularMaterial.cc : 383 - G4DNAMolecularMaterial.cc :
578 GetDensityTableFor() and GetNumMolPerVolTabl 384 GetDensityTableFor() and GetNumMolPerVolTableFor() methods are accepted
579 at G4State_Init rather than G4State_Idle. 385 at G4State_Init rather than G4State_Idle.
580 - Co-works with run-V10-04-01 and global-V10-0 386 - Co-works with run-V10-04-01 and global-V10-04-01.
581 387
582 21-12-2017, G.Cosmo tag emdna-V10-04-00 388 21-12-2017, G.Cosmo tag emdna-V10-04-00
583 - Fixed self-consistency in headers (missing # 389 - Fixed self-consistency in headers (missing #include) in G4IosFlagsSaver,
584 G4KDNode, G4MoleculeIterator and G4LEPTSDiff 390 G4KDNode, G4MoleculeIterator and G4LEPTSDiffXS.
585 Fixed spurious definition of G4IT namespace 391 Fixed spurious definition of G4IT namespace in G4ITMultiNavigator header.
586 Thanks to Raphael Isemann for reporting thes 392 Thanks to Raphael Isemann for reporting these.
587 393
588 01-11-2017, MK tag emdna-V10-03-30 394 01-11-2017, MK tag emdna-V10-03-30
589 - remove models/test directory 395 - remove models/test directory
590 396
591 31-10-2017, JA ( tag missing ) 397 31-10-2017, JA ( tag missing )
592 - G4KDNode.hh: Add missing included file - nee 398 - G4KDNode.hh: Add missing included file - needed in test
593 399
594 16-08-2017, SI tag emdna-V10-03-28 400 16-08-2017, SI tag emdna-V10-03-28
595 - updated variable types in models 401 - updated variable types in models
596 402
597 10-08-2017, SI tag emdna-V10-03-27 403 10-08-2017, SI tag emdna-V10-03-27
598 - test 404 - test
599 405
600 10-08-2017, SI tag emdna-V10-03-26 406 10-08-2017, SI tag emdna-V10-03-26
601 - same as previous 407 - same as previous
602 408
603 09-08-2017, SI tag emdna-V10-03-25 409 09-08-2017, SI tag emdna-V10-03-25
604 - same as previous 410 - same as previous
605 411
606 09-08-2017, SI tag emdna-V10-03-24 412 09-08-2017, SI tag emdna-V10-03-24
607 - G4DNAEmfietzoglouIonisationModel: added prot 413 - G4DNAEmfietzoglouIonisationModel: added protection for out of bound access
608 414
609 03-08-2017, VI tag emdna-V10-03-23 415 03-08-2017, VI tag emdna-V10-03-23
610 - G4DNAExcitation, G4DNAIonisation - make cohe 416 - G4DNAExcitation, G4DNAIonisation - make coherent model initialisation
611 417
612 28-07-2017, SI, tag emdna-V10-03-22 418 28-07-2017, SI, tag emdna-V10-03-22
613 - added stationary mode flag to CPA100 ionisat 419 - added stationary mode flag to CPA100 ionisation.
614 420
615 04-07-2017, SI, tag emdna-V10-03-21 421 04-07-2017, SI, tag emdna-V10-03-21
616 - added tagging of atom. deexc. products in io 422 - added tagging of atom. deexc. products in ionisation models.
617 423
618 31-05-2017, SM, tag emdna-V10-03-20 424 31-05-2017, SM, tag emdna-V10-03-20
619 - Correct windows issues with path of diff. CS 425 - Correct windows issues with path of diff. CS data file.
620 426
621 31-05-2017, SI, tag emdna-V10-03-19 427 31-05-2017, SI, tag emdna-V10-03-19
622 - roll-back (Windows issues with previous tag) 428 - roll-back (Windows issues with previous tag)
623 429
624 24-05-2017, SI, tag emdna-V10-03-18 430 24-05-2017, SI, tag emdna-V10-03-18
625 - added tagging of atom. deexc. products in io 431 - added tagging of atom. deexc. products in ionisation models.
626 432
627 11-05-2017, VI tag emdna-V10-03-17 433 11-05-2017, VI tag emdna-V10-03-17
628 - fix for gcc 7.1 warnings in G4DNACrossSectio 434 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
629 435
630 10-05-2017, NL, MK, SI, tag emdna-V10-03-16 436 10-05-2017, NL, MK, SI, tag emdna-V10-03-16
631 - fix for gcc 7.1 warnings in G4DNACrossSectio 437 - fix for gcc 7.1 warnings in G4DNACrossSectionDataSet.cc.
632 438
633 03-05-2017, SM, tag emdna-V10-03-15 439 03-05-2017, SM, tag emdna-V10-03-15
634 - add the new G4DNADummyModel and allow the co 440 - add the new G4DNADummyModel and allow the combination of G4VEmModel and G4VDNAModel in G4DNAModelInterface.
635 441
636 27-04-2017, SM, tag emdna-V10-03-14 442 27-04-2017, SM, tag emdna-V10-03-14
637 - correct small typo mistakes. 443 - correct small typo mistakes.
638 444
639 27-04-2017, SM, tag emdna-V10-03-13 445 27-04-2017, SM, tag emdna-V10-03-13
640 - update Models/G4DNAModelInterface to correct 446 - update Models/G4DNAModelInterface to correctly use G4DNAMolecularMaterial
641 447
642 10-03-2017, MK, tag emdna-V10-03-12 448 10-03-2017, MK, tag emdna-V10-03-12
643 - update utils/GNUmakefile 449 - update utils/GNUmakefile
644 450
645 13-02-2017, MK, tag emdna-V10-03-11 451 13-02-2017, MK, tag emdna-V10-03-11
646 - G4DNAMolecularMaterial: update doxygen doc 452 - G4DNAMolecularMaterial: update doxygen doc
647 453
648 13-02-2017, MK, tag emdna-V10-03-10 454 13-02-2017, MK, tag emdna-V10-03-10
649 - G4DNAMolecularMaterial: 455 - G4DNAMolecularMaterial:
650 remove newly introduced methods, add fatal e 456 remove newly introduced methods, add fatal exception if used
651 add doxygen documentation 457 add doxygen documentation
652 458
653 10-02-2017, MK, tag emdna-V10-03-09 459 10-02-2017, MK, tag emdna-V10-03-09
654 - Introducing G4PhysChemIO 460 - Introducing G4PhysChemIO
655 - Move call to G4TrackList::Pop(track) from G4 461 - Move call to G4TrackList::Pop(track) from G4ITTrackingManager
656 to G4ITTrackHolder. And make sure track stat 462 to G4ITTrackHolder. And make sure track status is set to fStopAndKill
657 when G4ITTrackHolder::PushToKill is called. 463 when G4ITTrackHolder::PushToKill is called.
658 464
659 09-02-2017, MK, tag emdna-V10-03-08 465 09-02-2017, MK, tag emdna-V10-03-08
660 - G4KDNode.hh: remove unused G4ThreeVector hea 466 - G4KDNode.hh: remove unused G4ThreeVector header
661 - G4KDMap.hh: int->size_t + indentation 467 - G4KDMap.hh: int->size_t + indentation
662 - G4KDMap.cc: int->size_t 468 - G4KDMap.cc: int->size_t
663 - G4IT & G4Molecule: template specialization 469 - G4IT & G4Molecule: template specialization
664 template<> G4KDNode<G4IT / G4Molecule>::~G4K 470 template<> G4KDNode<G4IT / G4Molecule>::~G4KDNode()
665 471
666 24-01-2017, SM, tag emdna-V10-03-07 472 24-01-2017, SM, tag emdna-V10-03-07
667 - add a ifdef to remove a warning (windows onl 473 - add a ifdef to remove a warning (windows only) related to the use of several levels of map.
668 474
669 23-01-2017, SM, tag emdna-V10-03-06 475 23-01-2017, SM, tag emdna-V10-03-06
670 - add missing G4DNAModelInterface files (.hh a 476 - add missing G4DNAModelInterface files (.hh and .cc) to the source.cmake
671 477
672 23-01-2017, SM CV, tag emdna-V10-03-05 478 23-01-2017, SM CV, tag emdna-V10-03-05
673 - add new G4DNAPTB* classes and the structure 479 - add new G4DNAPTB* classes and the structure of the new material management system
674 480
675 14-01-2017, MK, tag emdna-V10-02-37 481 14-01-2017, MK, tag emdna-V10-02-37
676 - Prevent a crash when calling G4ITTrackingMan 482 - Prevent a crash when calling G4ITTrackingManager::EndTracking from
677 the UserTimeStepAction::PostTimeStepAction 483 the UserTimeStepAction::PostTimeStepAction
678 - Add missing: G4ITTrackingManager* G4Schedule 484 - Add missing: G4ITTrackingManager* G4Scheduler::GetTrackingManager()
679 485
680 28-12-2016, SI, tag emdna-V10-03-04 486 28-12-2016, SI, tag emdna-V10-03-04
681 - extended upper energy limit of protons for 487 - extended upper energy limit of protons for
682 G4DNARuddIonisationExtendedModel 488 G4DNARuddIonisationExtendedModel
683 489
684 27-12-2016, SI, tag emdna-V10-03-03 490 27-12-2016, SI, tag emdna-V10-03-03
685 - updated references of CPA100 classes 491 - updated references of CPA100 classes
686 492
687 23-12-2016, SI, tag emdna-V10-03-02 493 23-12-2016, SI, tag emdna-V10-03-02
688 - updated sources.cmake 494 - updated sources.cmake
689 495
690 23-12-2016, SI, tag emdna-V10-03-01 496 23-12-2016, SI, tag emdna-V10-03-01
691 - commit of first CPA100 classes, part 2 497 - commit of first CPA100 classes, part 2
692 498
693 21-12-2016, SI, tag emdna-V10-03-00 499 21-12-2016, SI, tag emdna-V10-03-00
694 - commit of first CPA100 classes 500 - commit of first CPA100 classes
695 501
696 27-11-2016, MK, tag emdna-V10-02-36 502 27-11-2016, MK, tag emdna-V10-02-36
697 - G4Electron_aq: correct charge 503 - G4Electron_aq: correct charge
698 - G4DNADamages -> G4DNADamage 504 - G4DNADamages -> G4DNADamage
699 505
700 17-11-2016, MK, tag emdna-V10-02-35 506 17-11-2016, MK, tag emdna-V10-02-35
701 - G4ManyFastLists.hh: iterator::GetTrackList() 507 - G4ManyFastLists.hh: iterator::GetTrackList() correct type returned
702 508
703 16-11-2016, MK, tag emdna-V10-02-34 509 16-11-2016, MK, tag emdna-V10-02-34
704 - G4VMolecularDissociationDisplacer & G4DNAWat 510 - G4VMolecularDissociationDisplacer & G4DNAWaterDissociationDisplacer:
705 displacement types can be thread shared 511 displacement types can be thread shared
706 - G4TrackState: Move implementation of static 512 - G4TrackState: Move implementation of static function
707 G4VTrackStateID::Create() to c 513 G4VTrackStateID::Create() to cc file - windows crash
708 514
709 15-11-2016, MK, tag emdna-V10-02-33 515 15-11-2016, MK, tag emdna-V10-02-33
710 - G4VMolecularDissociationDisplacer.cc: add mi 516 - G4VMolecularDissociationDisplacer.cc: add missing initializer
711 517
712 14-11-2016, MK, tag emdna-V10-02-32 518 14-11-2016, MK, tag emdna-V10-02-32
713 - Separate def and impl of dissociation flag t 519 - Separate def and impl of dissociation flag to prevent issue with
714 windows platforms 520 windows platforms
715 521
716 14-11-2016, MK, tag emdna-V10-02-31 522 14-11-2016, MK, tag emdna-V10-02-31
717 - G4DNAOneStepThermalizationModel.cc: 523 - G4DNAOneStepThermalizationModel.cc:
718 tag init constexpr factor with number rather 524 tag init constexpr factor with number rather than expression
719 525
720 14-11-2016, MK, tag emdna-V10-02-30 526 14-11-2016, MK, tag emdna-V10-02-30
721 - Use CLHEP::pi instead of M_PI 527 - Use CLHEP::pi instead of M_PI
722 528
723 14-11-2016, MK, tag emdna-V10-02-29 529 14-11-2016, MK, tag emdna-V10-02-29
724 - Correct bracket enclosing 530 - Correct bracket enclosing
725 531
726 14-11-2016, MK, tag emdna-V10-02-28 532 14-11-2016, MK, tag emdna-V10-02-28
727 - G4VMoleculeCounter: move imp of static metho 533 - G4VMoleculeCounter: move imp of static methods to cc to avoid crash on win
728 - Update displacers, oneStepTherm 534 - Update displacers, oneStepTherm
729 - WaterDisplacer: change the electron thermali 535 - WaterDisplacer: change the electron thermalization distribution
730 - OneStepTherm: two inner thermalization model 536 - OneStepTherm: two inner thermalization models can be chosen as template argument
731 - Adds and use G4CTCounter 537 - Adds and use G4CTCounter
732 538
733 02-11-2016, MK, tag emdna-V10-02-27 539 02-11-2016, MK, tag emdna-V10-02-27
734 - add G4VMoleculeCounter & enable using custom 540 - add G4VMoleculeCounter & enable using custom molecule counter
735 - pass location information to molecule counte 541 - pass location information to molecule counter
736 - G4ITNavigator2: relocate voxelNavigator befo 542 - G4ITNavigator2: relocate voxelNavigator before every call to
737 computeStep & computeSafety 543 computeStep & computeSafety
738 544
739 07-08-2016, SI, tag emdna-V10-02-26 545 07-08-2016, SI, tag emdna-V10-02-26
740 - added stationnary mode to sub-excitation ele 546 - added stationnary mode to sub-excitation electron processes
741 547
742 23-06-2016, MK 548 23-06-2016, MK
743 - G4Scheduler: move G4IosFlagsSaver to Process 549 - G4Scheduler: move G4IosFlagsSaver to Process()
744 550
745 3-06-2016, MK, tag emdna-V10-02-25 551 3-06-2016, MK, tag emdna-V10-02-25
746 - G4DNAScreenedRutherfordElasticModel: modify 552 - G4DNAScreenedRutherfordElasticModel: modify handling of energy boundaries
747 at init time 553 at init time
748 - G4DNAUeharaScreenedRutherfordElasticModel: m 554 - G4DNAUeharaScreenedRutherfordElasticModel: move up "if(isInitialised)"
749 555
750 3-06-2016, MK, tag emdna-V10-02-24 556 3-06-2016, MK, tag emdna-V10-02-24
751 - G4DNAScreenedRutherfordElasticModel.hh: remo 557 - G4DNAScreenedRutherfordElasticModel.hh: remove killBelowEnergy,
752 SetKillBelowThreshold deprecated 558 SetKillBelowThreshold deprecated
753 - G4DNAScreenedRutherfordElasticModel.cc: remo 559 - G4DNAScreenedRutherfordElasticModel.cc: remove killBelowEnergy, modify init to
754 prevent erasing/rewriting data (use isInit) 560 prevent erasing/rewriting data (use isInit)
755 - G4DNAChampionElasticModel.hh: rearrange decl 561 - G4DNAChampionElasticModel.hh: rearrange declaration of attributes
756 - G4DNAChampionElasticModel.cc: move up if (i 562 - G4DNAChampionElasticModel.cc: move up if (isInitialised) { return; }
757 - G4DNAUeharaScreenedRutherfordElasticModel.cc 563 - G4DNAUeharaScreenedRutherfordElasticModel.cc: add exception at init time if
758 model used for another part than e- 564 model used for another part than e-
759 565
760 1-06-2016, MK, tag emdna-V10-02-23 566 1-06-2016, MK, tag emdna-V10-02-23
761 - G4DNAChemistryManager::CreateWaterMolecule: 567 - G4DNAChemistryManager::CreateWaterMolecule: reverse electronicLevel
762 logic for interface with physics models 568 logic for interface with physics models
763 569
764 31-05-2016, MK, tag emdna-V10-02-22 570 31-05-2016, MK, tag emdna-V10-02-22
765 - G4DNAChampionElasticModel.cc: reset check ek 571 - G4DNAChampionElasticModel.cc: reset check ekin >= LowEnergyLimit()
766 572
767 28-05-2016, MK, tag emdna-V10-02-21 573 28-05-2016, MK, tag emdna-V10-02-21
768 - G4DNAChampionElasticModel.cc: add missing "s 574 - G4DNAChampionElasticModel.cc: add missing "sigma = ..." after
769 one of the previous tags 575 one of the previous tags
770 576
771 19-05-2016, MK, tag emdna-V10-02-20 577 19-05-2016, MK, tag emdna-V10-02-20
772 - G4ITNavigator: remove warnings on gcc6.1 578 - G4ITNavigator: remove warnings on gcc6.1
773 579
774 17-05-2016, MK, tag emdna-V10-02-19 580 17-05-2016, MK, tag emdna-V10-02-19
775 - G4DNAElectronSolvation, G4DNAOneStepThermali 581 - G4DNAElectronSolvation, G4DNAOneStepThermalizationModel:
776 correct model and process names for solvation 582 correct model and process names for solvation
777 583
778 12-05-2016, MK, tag emdna-V10-02-18 584 12-05-2016, MK, tag emdna-V10-02-18
779 - G4DNAChampionElasticModel.hh: 585 - G4DNAChampionElasticModel.hh:
780 * GetKillBelowThreshold is deprecated 586 * GetKillBelowThreshold is deprecated
781 * Removed attributes: killBelowEnergy, lowEne 587 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit,
782 tableFile, tableData 588 tableFile, tableData
783 * Method Theta(): remove G4ParticleDefinition 589 * Method Theta(): remove G4ParticleDefinition * aParticleDefinition
784 - G4DNAUeharaScreenedRutherfordElasticModel.hh 590 - G4DNAUeharaScreenedRutherfordElasticModel.hh:
785 * SetKillBelowThreshold, GetKillBelowThreshol 591 * SetKillBelowThreshold, GetKillBelowThreshold are depreceted
786 (use G4LowECapture or G4DNAElectronSolvatatio 592 (use G4LowECapture or G4DNAElectronSolvatation)
787 * SelectHighEnergyLimit uses SetHighEnergyLim 593 * SelectHighEnergyLimit uses SetHighEnergyLimit instead and a warning is
788 emitted when used 594 emitted when used
789 * Removed attributes: killBelowEnergy, lowEne 595 * Removed attributes: killBelowEnergy, lowEnergyLimit, highEnergyLimit
790 - G4DNAChampionElasticModel.cc & G4DNAUeharaSc 596 - G4DNAChampionElasticModel.cc & G4DNAUeharaScreenedRutherfordElasticModel.cc:
791 * Verbose check only if preprocessor flag is 597 * Verbose check only if preprocessor flag is triggered -> recompile
792 * Energy boundaries checked in Initialise() - 598 * Energy boundaries checked in Initialise() -> reset if needed
793 * Call to G4Electron removed in Initialise() 599 * Call to G4Electron removed in Initialise() -> check using particle name
794 * Cleanup CrossSectionPerVolume by removing u 600 * Cleanup CrossSectionPerVolume by removing unnecessary checks and calls to map
795 * SampleSecondaries(): remove "kill below thr 601 * SampleSecondaries(): remove "kill below threshold" and energy checks
796 * G4DNAChampionElasticModel::Theta remove che 602 * G4DNAChampionElasticModel::Theta remove check particle == G4Electron
797 - G4DNAOneStepThermalizationModel.cc: 603 - G4DNAOneStepThermalizationModel.cc:
798 * Check verbose flag if a preprocessor flag i 604 * Check verbose flag if a preprocessor flag is trigerred
799 * Remove call to G4Electron at initialization 605 * Remove call to G4Electron at initialization time
800 - G4DNATransformElectronModel.cc: 606 - G4DNATransformElectronModel.cc:
801 * Check verbose flag if a preprocessor flag i 607 * Check verbose flag if a preprocessor flag is trigerred
802 * Remove call to G4Electron at initialization 608 * Remove call to G4Electron at initialization time
803 * Add check if(G4DNAChemistryManager::IsActiv 609 * Add check if(G4DNAChemistryManager::IsActivated()) then solvated electron
804 created; otherwise, the primary electron is 610 created; otherwise, the primary electron is killed
805 611
806 30-04-2016, MK, tag emdna-V10-02-17 612 30-04-2016, MK, tag emdna-V10-02-17
807 - G4VUserChemistryList: Add flag fIsPhysicsCon 613 - G4VUserChemistryList: Add flag fIsPhysicsConstructor
808 614
809 30-04-2016, MK, tag emdna-V10-02-16 615 30-04-2016, MK, tag emdna-V10-02-16
810 - G4VUserChemistryList: remove a if statement 616 - G4VUserChemistryList: remove a if statement
811 - G4MoleculeCounter: at initialization time, p 617 - G4MoleculeCounter: at initialization time, prevent creating entries for
812 unregistered molecule definition 618 unregistered molecule definition
813 619
814 22-04-2016, MK, tag emdna-V10-02-15 620 22-04-2016, MK, tag emdna-V10-02-15
815 - G4DNAElectronSolvatation -> G4DNAElectronSol 621 - G4DNAElectronSolvatation -> G4DNAElectronSolvation
816 - G4DNASancheExcitationModel: remove warning w 622 - G4DNASancheExcitationModel: remove warning when SANCHE_VERBOSE is OFF
817 623
818 22-04-2016, MK, tag emdna-V10-02-14 624 22-04-2016, MK, tag emdna-V10-02-14
819 - G4DNAMeltonAttachmentModel, G4DNASancheExcit 625 - G4DNAMeltonAttachmentModel, G4DNASancheExcitationModel:
820 remove usage of internal energy boundaries 626 remove usage of internal energy boundaries
821 627
822 19-03-2016, SI, tag emdna-V10-02-13 628 19-03-2016, SI, tag emdna-V10-02-13
823 - added nrj extensibility to SR and USR models 629 - added nrj extensibility to SR and USR models
824 630
825 11-03-2016, SI, tag emdna-V10-02-12 631 11-03-2016, SI, tag emdna-V10-02-12
826 -roll back to files in emdna-V10-02-06 632 -roll back to files in emdna-V10-02-06
827 633
828 10-03-2016, SI, tag emdna-V10-02-11 634 10-03-2016, SI, tag emdna-V10-02-11
829 -further cleaning of G4DNAUeharaScreenedRuther 635 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
830 and G4DNAScreenedRutherfordElasticModel 636 and G4DNAScreenedRutherfordElasticModel
831 637
832 10-03-2016, SI, tag emdna-V10-02-10 638 10-03-2016, SI, tag emdna-V10-02-10
833 -further cleaning of G4DNAUeharaScreenedRuther 639 -further cleaning of G4DNAUeharaScreenedRutherfordElasticModel
834 640
835 07-03-2016, SI, tag emdna-V10-02-09 641 07-03-2016, SI, tag emdna-V10-02-09
836 -added possibility to extend applicability lim 642 -added possibility to extend applicability limit
837 of G4DNAUeharaScreenedRutherfordElasticModel 643 of G4DNAUeharaScreenedRutherfordElasticModel
838 644
839 06-03-2016, SI, tag emdna-V10-02-08 645 06-03-2016, SI, tag emdna-V10-02-08
840 -removed useless G4Pow declaration 646 -removed useless G4Pow declaration
841 647
842 04-03-2016, SI, tag emdna-V10-02-07 648 04-03-2016, SI, tag emdna-V10-02-07
843 -replaced std::log by G4Log 649 -replaced std::log by G4Log
844 -replaced std::log10() by G4Log()/g4pow->logZ( 650 -replaced std::log10() by G4Log()/g4pow->logZ(10)
845 651
846 02-03-2016, SI, tag emdna-V10-02-06 652 02-03-2016, SI, tag emdna-V10-02-06
847 -replaced std::exp by G4Exp 653 -replaced std::exp by G4Exp
848 654
849 02-03-2016, SI, tag emdna-V10-02-05 655 02-03-2016, SI, tag emdna-V10-02-05
850 -replaced std::exp by G4Exp 656 -replaced std::exp by G4Exp
851 657
852 02-03-2016, SI, tag emdna-V10-02-04 658 02-03-2016, SI, tag emdna-V10-02-04
853 -replaced std::exp by G4Exp 659 -replaced std::exp by G4Exp
854 660
855 01-03-2016, SI, tag emdna-V10-02-03 661 01-03-2016, SI, tag emdna-V10-02-03
856 * update of fast computation of: 662 * update of fast computation of:
857 -G4DNAScreenRutherfordElasticModel 663 -G4DNAScreenRutherfordElasticModel
858 -G4DNAUeharaScreenRutherfordElasticModel 664 -G4DNAUeharaScreenRutherfordElasticModel
859 by S. Okada (KEK, JP) 665 by S. Okada (KEK, JP)
860 666
861 17-02-2016, MK, tag emdna-V10-02-02 667 17-02-2016, MK, tag emdna-V10-02-02
862 * G4MoleculeCounter: remove check of c++ versi 668 * G4MoleculeCounter: remove check of c++ version for unique_ptr/auto_ptr selection
863 669
864 16-12-2015, SI, tag emdna-V10-02-01 670 16-12-2015, SI, tag emdna-V10-02-01
865 * Ionisation models : in SampleSecondaries: 671 * Ionisation models : in SampleSecondaries:
866 added protection on energy for interpolation m 672 added protection on energy for interpolation method change
867 673
868 16-12-2015, SI, tag emdna-V10-02-00 674 16-12-2015, SI, tag emdna-V10-02-00
869 * G4DNAIonElasticModel::SampleSecondaries: add 675 * G4DNAIonElasticModel::SampleSecondaries: added protection on
870 energy 676 energy
871 677
872 13-11-2015, MK, tag emdna-V10-01-55 678 13-11-2015, MK, tag emdna-V10-01-55
873 * G4MoleculeCounter::Use / InUse => move imple 679 * G4MoleculeCounter::Use / InUse => move implementation to source
874 file 680 file
875 681
876 10-11-2015, MK, tag emdna-V10-01-54 682 10-11-2015, MK, tag emdna-V10-01-54
877 * remove unused variables 683 * remove unused variables
878 684
879 10-11-2015, MK, tag emdna-V10-01-53 685 10-11-2015, MK, tag emdna-V10-01-53
880 * Coverity fixes 686 * Coverity fixes
881 687
882 06-11-2015, MK, tag emdna-V10-01-52 688 06-11-2015, MK, tag emdna-V10-01-52
883 * G4DNAWaterDissociationDisplacer: remove usel 689 * G4DNAWaterDissociationDisplacer: remove useless verbose
884 690
885 06-11-2015, MK, tag emdna-V10-01-51 691 06-11-2015, MK, tag emdna-V10-01-51
886 * G4FastList.hh : use WatcherSet::iterator to 692 * G4FastList.hh : use WatcherSet::iterator to avoid compilation errors
887 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseIntern 693 on x86_64-slc6-gcc49-Seq-BoundsCheck-UseInternalCLHEP
888 694
889 06-11-2015, MK, tag emdna-V10-01-50 695 06-11-2015, MK, tag emdna-V10-01-50
890 * Avoid indirect include of G4TrackState to G4 696 * Avoid indirect include of G4TrackState to G4physicslists category
891 * Reorganize includes 697 * Reorganize includes
892 * Add G4ITStepProcessorState_Lock.hh 698 * Add G4ITStepProcessorState_Lock.hh
893 699
894 06-11-2015, MK, tag emdna-V10-01-49 700 06-11-2015, MK, tag emdna-V10-01-49
895 * G4MoleculeCounter: do not initialize compDou 701 * G4MoleculeCounter: do not initialize compDoubleWithPrecision::fPrecision
896 to other value than 0 - causing compilation er 702 to other value than 0 - causing compilation errors on windows
897 * G4DNAOneStepThermalizationModel: do not incl 703 * G4DNAOneStepThermalizationModel: do not include G4ITNavigator in the header
898 but in the source file - causing crashes on wi 704 but in the source file - causing crashes on windows
899 705
900 04-11-2015, MK, tag emdna-V10-01-48 706 04-11-2015, MK, tag emdna-V10-01-48
901 * G4DNARevertProbability: added and used in G4 707 * G4DNARevertProbability: added and used in G4DNAWaterDissociationDisplacer
902 * utils/sources.cmake: G4DNARevertProbability. 708 * utils/sources.cmake: G4DNARevertProbability.hh added
903 * G4DNAWaterDissociationDisplacer: fix and spe 709 * G4DNAWaterDissociationDisplacer: fix and speed up distributions
904 * models/GNUmakefile: add missing dependency 710 * models/GNUmakefile: add missing dependency
905 * G4DNAOneStepThermalizationModel: delete navi 711 * G4DNAOneStepThermalizationModel: delete navigator state when model
906 is deleted 712 is deleted
907 * G4FastList.icc: use typedef WatcherSet even 713 * G4FastList.icc: use typedef WatcherSet even when iterators are used
908 * G4ITModelProcessor: add RegisterModel, GetCo 714 * G4ITModelProcessor: add RegisterModel, GetComputeTimeStep +
909 fComputeTimeStep & fComputeReaction flags 715 fComputeTimeStep & fComputeReaction flags
910 * G4DNAElectronHoleRecombination: enable using 716 * G4DNAElectronHoleRecombination: enable using this model even when not
911 all dissociation products have been defined 717 all dissociation products have been defined (they will just not be taken
912 into account) 718 into account)
913 * G4DNAMolecularReactionTable: delete reaction 719 * G4DNAMolecularReactionTable: delete reaction data when table is deleted
914 720
915 03-11-2015, MK, tag emdna-V10-01-47 721 03-11-2015, MK, tag emdna-V10-01-47
916 * G4Scheduler: Update time before G4ITStepProc 722 * G4Scheduler: Update time before G4ITStepProcessor::DoIt
917 * G4ITStepProcessor::DoIt : reset leading trac 723 * G4ITStepProcessor::DoIt : reset leading tracks at the end of
918 the call 724 the call
919 725
920 03-11-2015, MK, tag emdna-V10-01-46 726 03-11-2015, MK, tag emdna-V10-01-46
921 * G4MolecularDissociation 727 * G4MolecularDissociation
922 * G4DNAOneStepSolvatationModel -> G4DNAOneStep 728 * G4DNAOneStepSolvatationModel -> G4DNAOneStepThermalizationModel
923 Avoid placing products outside volume of the 729 Avoid placing products outside volume of the mother track
924 (causing navigator complains) 730 (causing navigator complains)
925 731
926 03-11-2015, MK, tag emdna-V10-01-45 732 03-11-2015, MK, tag emdna-V10-01-45
927 * G4Serialize: Add definition in header for G4 733 * G4Serialize: Add definition in header for G4String
928 734
929 02-11-2015, MK, tag emdna-V10-01-44 735 02-11-2015, MK, tag emdna-V10-01-44
930 * G4Serialize: remove inline in front of templ 736 * G4Serialize: remove inline in front of template
931 * molecules: fix unit tests 737 * molecules: fix unit tests
932 * G4DNAElectronHoleRecombination: add missing 738 * G4DNAElectronHoleRecombination: add missing check on G4MoleculeCounter::InUse
933 * G4MoleculeCounter: add a flag to check or no 739 * G4MoleculeCounter: add a flag to check or not against scheduler time
934 * G4MoleculeTable: do not store G4MolecularCon 740 * G4MoleculeTable: do not store G4MolecularConf anymore
935 -> G4MolecularConfMan is taking care of this 741 -> G4MolecularConfMan is taking care of this
936 742
937 30-10-2015, MK, tag emdna-V10-01-43 743 30-10-2015, MK, tag emdna-V10-01-43
938 * Bug solved in G4MoleculeCounter 744 * Bug solved in G4MoleculeCounter
939 and made compatible wih G4DNAElectronHoleRec 745 and made compatible wih G4DNAElectronHoleRecombination (temporary)
940 * Unit tests corrected 746 * Unit tests corrected
941 * G4VITDiscreteProcess added 747 * G4VITDiscreteProcess added
942 * G4ReactionTableMessenger added 748 * G4ReactionTableMessenger added
943 * Intermediate update for 10.2 release 749 * Intermediate update for 10.2 release
944 750
945 27-10-2015, MK, tag emdna-V10-01-42 751 27-10-2015, MK, tag emdna-V10-01-42
946 * G4ITStepProcessor: clean dynamic_cast to G4V 752 * G4ITStepProcessor: clean dynamic_cast to G4VITProcess
947 753
948 26-10-2015, MK, tag emdna-V10-01-41 754 26-10-2015, MK, tag emdna-V10-01-41
949 * Sanche model: try to solve std::vector out o 755 * Sanche model: try to solve std::vector out of bounds
950 756
951 23-10-2015, MK, tag emdna-V10-01-40 757 23-10-2015, MK, tag emdna-V10-01-40
952 * remove all CLHEP::shared_ptr usage 758 * remove all CLHEP::shared_ptr usage
953 759
954 23-10-2015, CV, SM, tag emdna-V10-01-39 760 23-10-2015, CV, SM, tag emdna-V10-01-39
955 * Addded base class G4VDNAPTBModel 761 * Addded base class G4VDNAPTBModel
956 762
957 28-09-2015, SI, tag emdna-V10-01-38 763 28-09-2015, SI, tag emdna-V10-01-38
958 * updated ion selection in G4DNARuddIonisation 764 * updated ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
959 765
960 19-09-2015, MK, tag emdna-V10-01-37 766 19-09-2015, MK, tag emdna-V10-01-37
961 * added proton ionisation scaling in G4DNABorn 767 * added proton ionisation scaling in G4DNABornIonisationModel1*.cc
962 * changed ion selection in G4DNARuddIonisation 768 * changed ion selection in G4DNARuddIonisationExtendedModel.cc for Z>2
963 769
964 17-09-2015, MK, tag emdna-V10-01-36 770 17-09-2015, MK, tag emdna-V10-01-36
965 * G4MoleculeGun: Remove compilation warnings 771 * G4MoleculeGun: Remove compilation warnings
966 772
967 04-09-2015 MK, tag emdna-V10-01-35 773 04-09-2015 MK, tag emdna-V10-01-35
968 * Fix G4MoleculeGun compilation errors 774 * Fix G4MoleculeGun compilation errors
969 775
970 03-09-2015 SI, tag emdna-V10-01-34 776 03-09-2015 SI, tag emdna-V10-01-34
971 * Added stationary regime to all inelastic mod 777 * Added stationary regime to all inelastic models
972 778
973 19-08-2015, MK 779 19-08-2015, MK
974 * Update G4MoleculeGun & G4MoleculeGunMessenge 780 * Update G4MoleculeGun & G4MoleculeGunMessenger:
975 - compatible with both Smoluchowski & Gilles 781 - compatible with both Smoluchowski & Gillespie models
976 782
977 15-08-2015, S.Incerti, tag emdna-V10-01-33 783 15-08-2015, S.Incerti, tag emdna-V10-01-33
978 * Added easier handling of cumulative proba. i 784 * Added easier handling of cumulative proba. in SR elastic models
979 785
980 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31 786 13-08-2015, G.Cosmo, tag emdna-V10-01-32, 31
981 * Fixed compilation warning on clang for misma 787 * Fixed compilation warning on clang for mismatch class/struct in
982 declaration of G4MoleculeShoot. 788 declaration of G4MoleculeShoot.
983 789
984 13-08-2015, G.Cosmo, tag emdna-V10-01-30 790 13-08-2015, G.Cosmo, tag emdna-V10-01-30
985 * Fixed compilation warning on clang for misma 791 * Fixed compilation warning on clang for mismatch class/struct in
986 declaration of G4MoleculeShootMessenger. 792 declaration of G4MoleculeShootMessenger.
987 793
988 12-08-2015, MK, tag emdna-V10-01-29 794 12-08-2015, MK, tag emdna-V10-01-29
989 * Add G4Serialize in the build tree temporaril 795 * Add G4Serialize in the build tree temporarily
990 796
991 12-08-2015, MK, tag emdna-V10-01-28 797 12-08-2015, MK, tag emdna-V10-01-28
992 * G4Serialize added 798 * G4Serialize added
993 799
994 12-08-2015, MK 800 12-08-2015, MK
995 * G4memory : quick removal of CLHEP::shared_pt 801 * G4memory : quick removal of CLHEP::shared_ptr dependency
996 802
997 24-07-2015, MK 803 24-07-2015, MK
998 - G4MolecularReactionTable 804 - G4MolecularReactionTable
999 * Add get methods 805 * Add get methods
1000 - G4MoleculeGun, G4MoleculeGunMessenger 806 - G4MoleculeGun, G4MoleculeGunMessenger
1001 * Molecule gun : place randomly in a box 807 * Molecule gun : place randomly in a box
1002 808
1003 15-07-2015, MK 809 15-07-2015, MK
1004 - G4DNAAttachment, G4DNAChargeDecrease, G4DNA 810 - G4DNAAttachment, G4DNAChargeDecrease, G4DNADissociation,
1005 G4DNAExcitation, G4DNAIonisation 811 G4DNAExcitation, G4DNAIonisation
1006 * processes & models initialisation again 812 * processes & models initialisation again
1007 813
1008 15-07-2015, MK, tag emdna-V10-01-26 814 15-07-2015, MK, tag emdna-V10-01-26
1009 -G4ITModelProcessor & G4ITStepProcessor: 815 -G4ITModelProcessor & G4ITStepProcessor:
1010 * add macro to prevent warnings in non-verbo 816 * add macro to prevent warnings in non-verbose mode
1011 817
1012 11-07-2015, MK, tag emdna-V10-01-25 818 11-07-2015, MK, tag emdna-V10-01-25
1013 - Add G4IosFlagsSaver.hh to sources.cmake 819 - Add G4IosFlagsSaver.hh to sources.cmake
1014 - G4IosFlagsSaver.hh add an extra line of the 820 - G4IosFlagsSaver.hh add an extra line of the end of the file
1015 821
1016 10-07-2015, MK, tag emdna-V10-01-24 822 10-07-2015, MK, tag emdna-V10-01-24
1017 - G4DNA Processes : correct setup of energy b 823 - G4DNA Processes : correct setup of energy boundaries
1018 - G4DNAElectronHoleRecombination remove verbo 824 - G4DNAElectronHoleRecombination remove verbose
1019 - G4DNADingfelderChargeDecreaseModel: add hol 825 - G4DNADingfelderChargeDecreaseModel: add hole creation
1020 - G4DNAEmfietzoglouXModel: specify energy bou 826 - G4DNAEmfietzoglouXModel: specify energy boundaries in constructor
1021 827
1022 08-07-2015, MK, tag emdna-V10-01-23 828 08-07-2015, MK, tag emdna-V10-01-23
1023 - G4ITLeadingTracks added 829 - G4ITLeadingTracks added
1024 - G4ITSteppingVerbose added 830 - G4ITSteppingVerbose added
1025 - G4IosFlagsSaver added 831 - G4IosFlagsSaver added
1026 - G4VITSteppingVerbose & G4ITSteppingVerbose 832 - G4VITSteppingVerbose & G4ITSteppingVerbose added
1027 * new UI command /chem/tracking/verbose 1,2 833 * new UI command /chem/tracking/verbose 1,2,3 ...
1028 - G4MoleculeDefinition: 834 - G4MoleculeDefinition:
1029 ::SetFormatedName added 835 ::SetFormatedName added
1030 ::NewConfiguration methods added 836 ::NewConfiguration methods added
1031 ::NewConfiguration added 837 ::NewConfiguration added
1032 ::AddDecayChannel per G4MolecularConfigurat 838 ::AddDecayChannel per G4MolecularConfiguration or conf label added
1033 And replace ::AddDecayChannel for a molecul 839 And replace ::AddDecayChannel for a molecule model
1034 ::Finalize added 840 ::Finalize added
1035 - G4MolecularConfiguration: 841 - G4MolecularConfiguration:
1036 * new configuration can be defined by label 842 * new configuration can be defined by labels
1037 * Add Finalize method and add exception if 843 * Add Finalize method and add exception if attempt to modified
1038 the G4MolecularConfiguration is done after 844 the G4MolecularConfiguration is done after finalization
1039 - G4MolecularDissociationChannel & G4DNAMolec 845 - G4MolecularDissociationChannel & G4DNAMolecularReactionTable &
1040 G4DNAMolecularEncounterStepper use G4Molecula 846 G4DNAMolecularEncounterStepper use G4MolecularConfiguration rather
1041 than molecule models 847 than molecule models
1042 - G4Molecule add constructor where only G4Mol 848 - G4Molecule add constructor where only G4MolecularConfiguration is specified
1043 - G4Scheduler : remove entirely track specifi 849 - G4Scheduler : remove entirely track specification from this class
1044 - G4ITXProcess : deal with tracks 850 - G4ITXProcess : deal with tracks
1045 - G4ITTrackingManager is a "service" to start 851 - G4ITTrackingManager is a "service" to start and end tracking
1046 - G4DNAElectronHoleRecombination added 852 - G4DNAElectronHoleRecombination added
1047 853
1048 06-07-2015, Shogo Okada, SI, tag emdna-V10-01 854 06-07-2015, Shogo Okada, SI, tag emdna-V10-01-22
1049 - G4DNAEmfietzoglouIonisationModel: removed c 855 - G4DNAEmfietzoglouIonisationModel: removed condition for
1050 fasterCode usage on shell selection. 856 fasterCode usage on shell selection.
1051 857
1052 26-06-2015, MK 858 26-06-2015, MK
1053 - G4DNAIonElasticModel: modify "validated" to 859 - G4DNAIonElasticModel: modify "validated" to "activated" in
1054 warning message description 860 warning message description
1055 861
1056 16-06-205, MK 862 16-06-205, MK
1057 - Add G4Scheduler::GetGun() 863 - Add G4Scheduler::GetGun()
1058 864
1059 16-06-2015, MK, tag emdna-V10-01-21 865 16-06-2015, MK, tag emdna-V10-01-21
1060 - G4DNAElastic.cc : add elseif(name == ... 866 - G4DNAElastic.cc : add elseif(name == ...
1061 - G4DNAIonElasticModel: clean and fix double 867 - G4DNAIonElasticModel: clean and fix double free
1062 868
1063 12-06-2015, MK, tag emdna-V10-01-20 869 12-06-2015, MK, tag emdna-V10-01-20
1064 - remove virtual keyword from G4IT::GetPositi 870 - remove virtual keyword from G4IT::GetPosition()
1065 871
1066 04-06-2015, MK 872 04-06-2015, MK
1067 - just cosmetics 873 - just cosmetics
1068 - remove virtual keyword from G4IT::operator[ 874 - remove virtual keyword from G4IT::operator[]
1069 875
1070 26-05-2015, Robert Hatcher, tag emdna-V10-01- 876 26-05-2015, Robert Hatcher, tag emdna-V10-01-19
1071 - Remove unnecessary "using namespace std" fr 877 - Remove unnecessary "using namespace std" from various headers
1072 that causes problems w/ G4AnyMethod & G4Gen 878 that causes problems w/ G4AnyMethod & G4GenericPhysicsList
1073 when using clang and/or vc12 879 when using clang and/or vc12
1074 - Fully qualify std::string elsewhere as need 880 - Fully qualify std::string elsewhere as needed to adjust
1075 881
1076 22-05-2015, John Allison, tag emdna-V10-01-18 882 22-05-2015, John Allison, tag emdna-V10-01-18
1077 - G4ITTrackHolder.cc: Replaced "G4Threading:: 883 - G4ITTrackHolder.cc: Replaced "G4Threading::IsWorkerThread() == false" by
1078 "G4Threading::IsMasterThread()". 884 "G4Threading::IsMasterThread()".
1079 885
1080 17-05-2015, MK, tag emdna-V10-01-17 886 17-05-2015, MK, tag emdna-V10-01-17
1081 - G4DNABornIonisationModel1/2 & G4DNABornExci 887 - G4DNABornIonisationModel1/2 & G4DNABornExcitationModel2: remove unused variables
1082 - Correct sources.cmake 888 - Correct sources.cmake
1083 - Born headears: includes both model versions 889 - Born headears: includes both model versions when proxy header is included
1084 890
1085 16-05-2015, MK, tag emdna-V10-01-16 891 16-05-2015, MK, tag emdna-V10-01-16
1086 - Add G4DNAEmfietzoglouExcitationModel 892 - Add G4DNAEmfietzoglouExcitationModel
1087 - Add G4DNAEmfietzoglouIonisationModel 893 - Add G4DNAEmfietzoglouIonisationModel
1088 - Add G4DNAUeharaScreenedRutherfordElasticMod 894 - Add G4DNAUeharaScreenedRutherfordElasticModel
1089 - Add G4DNABornIonisationModel2 (temporary) 895 - Add G4DNABornIonisationModel2 (temporary)
1090 - Add G4DNABornExcitationModel2 (temporary) 896 - Add G4DNABornExcitationModel2 (temporary)
1091 897
1092 15-05-2015, MK, tag emdna-V10-01-15 898 15-05-2015, MK, tag emdna-V10-01-15
1093 - Postpone G4DNASmoluchowskiDiffusion until c 899 - Postpone G4DNASmoluchowskiDiffusion until c++11 is adopted
1094 900
1095 14-05-2015, MK, tag emdna-V10-01-14 901 14-05-2015, MK, tag emdna-V10-01-14
1096 - G4DNASmoluchowskiDiffusion: std::sqrt -> sq 902 - G4DNASmoluchowskiDiffusion: std::sqrt -> sqrt
1097 903
1098 14-05-2015, MK, tag emdna-V10-01-13 904 14-05-2015, MK, tag emdna-V10-01-13
1099 - G4DNASmoluchowskiDiffusion: try to solve co 905 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1100 - G4ITReaction: try to solve compilation erro 906 - G4ITReaction: try to solve compilation error
1101 907
1102 12-05-2015, MK, tag emdna-V10-01-12 908 12-05-2015, MK, tag emdna-V10-01-12
1103 - G4DNASmoluchowskiDiffusion: try to solve co 909 - G4DNASmoluchowskiDiffusion: try to solve compilation error
1104 910
1105 12-05-2015, MK, tag emdna-V10-01-11 911 12-05-2015, MK, tag emdna-V10-01-11
1106 - Add G4DNASmoluchowskiDiffusion to the build 912 - Add G4DNASmoluchowskiDiffusion to the build tree
1107 913
1108 11-05-2015, MK, tag emdna-V10-01-10 914 11-05-2015, MK, tag emdna-V10-01-10
1109 - G4DNABornExcitationModel: 915 - G4DNABornExcitationModel:
1110 +Add GetPartialCrossSection 916 +Add GetPartialCrossSection
1111 +Code cleaning 917 +Code cleaning
1112 - G4DNAMillerGreenExcitationModel: 918 - G4DNAMillerGreenExcitationModel:
1113 +Add GetPartialCrossSection 919 +Add GetPartialCrossSection
1114 - G4DNAChemistryManager::GetValue(...) added 920 - G4DNAChemistryManager::GetValue(...) added
1115 921
1116 02-05-2015, MK 922 02-05-2015, MK
1117 - Update G4TrackState & related classes 923 - Update G4TrackState & related classes
1118 - G4DNABrownianTransportation: 924 - G4DNABrownianTransportation:
1119 +Add constructor & destructor to G4Brownian 925 +Add constructor & destructor to G4BrownianAction
1120 +comment useless method 926 +comment useless method
1121 - G4Scheduler: 927 - G4Scheduler:
1122 +Add fStopTime+Watched times+PrintWhyDoYouS 928 +Add fStopTime+Watched times+PrintWhyDoYouStop method (code was existing before)
1123 +remove fTmpEndTime 929 +remove fTmpEndTime
1124 +Add CanICarryOn 930 +Add CanICarryOn
1125 - add G4DNASmoluchowskiDiffusion *PRELIMINARY 931 - add G4DNASmoluchowskiDiffusion *PRELIMINARY*
1126 932
1127 18-03-2015, MK, tag emdna-V10-01-08 933 18-03-2015, MK, tag emdna-V10-01-08
1128 - Same as before, just add the missing Histor 934 - Same as before, just add the missing History file
1129 935
1130 18-03-2015, MK, tag emdna-V10-01-07 936 18-03-2015, MK, tag emdna-V10-01-07
1131 - G4UserTimeStepAction::UserReactionAction : 937 - G4UserTimeStepAction::UserReactionAction : vector of products becomes a pointer
1132 instead of a reference 938 instead of a reference
1133 939
1134 12-02-2015, MK, tag emdna-V10-01-06 940 12-02-2015, MK, tag emdna-V10-01-06
1135 - G4ITReaction: Remove "gAll" introduced for 941 - G4ITReaction: Remove "gAll" introduced for testing
1136 - G4ITModelProcessor: Remove "assert" introdu 942 - G4ITModelProcessor: Remove "assert" introduced for testing
1137 - G4ITTransportation: Remove extra parenthesi 943 - G4ITTransportation: Remove extra parenthesis in the undef of PrepareState
1138 944
1139 11-02-2015, MK, tag emdna-V10-01-05 945 11-02-2015, MK, tag emdna-V10-01-05
1140 - Fix reproductibility of the chemistry modul 946 - Fix reproductibility of the chemistry module
1141 - Fix the "no reaction table found" bug: G4IT 947 - Fix the "no reaction table found" bug: G4ITReaction class created
1142 - G4shared_ptr refers to std::shared_ptr when 948 - G4shared_ptr refers to std::shared_ptr when C++11 is activated
1143 949
1144 16-01-2015, SI, tag emdna-V10-01-04 950 16-01-2015, SI, tag emdna-V10-01-04
1145 - added Fe56 into G4DNARuddIonisationExtended 951 - added Fe56 into G4DNARuddIonisationExtendedModel
1146 952
1147 14-12-2014, MK, tag emdna-V10-01-03 953 14-12-2014, MK, tag emdna-V10-01-03
1148 - BornIonisation: correct array cleaning 954 - BornIonisation: correct array cleaning
1149 - ScreenRutherfordElastic: correct retrieval 955 - ScreenRutherfordElastic: correct retrieval of water density
1150 956
1151 13-12-2014, SI, tag emdna-V10-01-02 957 13-12-2014, SI, tag emdna-V10-01-02
1152 - Added elastic model by H. Tran. 958 - Added elastic model by H. Tran.
1153 959
1154 12-12-2014, G.Cosmo, tag emdna-V10-01-01 960 12-12-2014, G.Cosmo, tag emdna-V10-01-01
1155 - Explicitly initialise to zero TLS pointers 961 - Explicitly initialise to zero TLS pointers in G4KDNode.hh and G4ITFinder.icc
1156 to allow for compilation on Linux/clang-3.5 962 to allow for compilation on Linux/clang-3.5.
1157 963
1158 05-12-2014, G.Cosmo, tag emdna-V10-01-00 964 05-12-2014, G.Cosmo, tag emdna-V10-01-00
1159 - Corrected sources.cmake in management and m 965 - Corrected sources.cmake in management and molecules/management, to
1160 include missing files: 966 include missing files:
1161 G4ITTransportationManager.icc 967 G4ITTransportationManager.icc
1162 G4KDNode.icc 968 G4KDNode.icc
1163 G4KDTree.icc 969 G4KDTree.icc
1164 G4MoleculeFinder.hh 970 G4MoleculeFinder.hh
1165 971
1166 01-12-2014, MK, tag emdna-V10-00-63 972 01-12-2014, MK, tag emdna-V10-00-63
1167 - Temporary fix for avoiding bad relocation o 973 - Temporary fix for avoiding bad relocation of Brownian particles
1168 It slows the computation by forcing the Brown 974 It slows the computation by forcing the Brownian particles to stop at the volumes' boundaries
1169 - Transform fStopAndAlive to fStopAndKill in 975 - Transform fStopAndAlive to fStopAndKill in G4DNABrownianTransportation
1170 when the particle has reached a boundary 976 when the particle has reached a boundary
1171 977
1172 28-11-2014, MK, tag emdna-V10-00-62 978 28-11-2014, MK, tag emdna-V10-00-62
1173 - Retag 979 - Retag
1174 980
1175 28-11-2014, MK, tag emdna-V10-00-61 981 28-11-2014, MK, tag emdna-V10-00-61
1176 - Fix chemistry initialization in standalone 982 - Fix chemistry initialization in standalone
1177 - Fix Brownian navigation 983 - Fix Brownian navigation
1178 - Some fixes related to scheduler 984 - Some fixes related to scheduler
1179 - Rename macro commands to reflect usage of s 985 - Rename macro commands to reflect usage of scheduler
1180 - Enhance comments 986 - Enhance comments
1181 987
1182 24-11-2014, MK, tag emdna-V10-00-60 988 24-11-2014, MK, tag emdna-V10-00-60
1183 - Remove a useless but also fatal (when chemi 989 - Remove a useless but also fatal (when chemistry is not activated) exception
1184 990
1185 24-11-2014, MK, tag emdna-V10-00-59 991 24-11-2014, MK, tag emdna-V10-00-59
1186 - Enhance doxygen comments in G4DNABrownianTr 992 - Enhance doxygen comments in G4DNABrownianTransportation
1187 - Remove useless verbose 993 - Remove useless verbose
1188 - Try to compile on all platforms 994 - Try to compile on all platforms
1189 - Correct initialization of G4DNAChemistryMan 995 - Correct initialization of G4DNAChemistryManager
1190 - Simplify initialization of chemistry from u 996 - Simplify initialization of chemistry from user applications
1191 Just registering constructor is enough to i 997 Just registering constructor is enough to initialized the chemistry
1192 998
1193 24-11-2014, MK, tag emdna-V10-00-58 999 24-11-2014, MK, tag emdna-V10-00-58
1194 - G4FastList: remove all friend declarations 1000 - G4FastList: remove all friend declarations
1195 1001
1196 22-11-2014, MK, tag emdna-V10-00-57 1002 22-11-2014, MK, tag emdna-V10-00-57
1197 - Another attempt to compile G4FastList on al 1003 - Another attempt to compile G4FastList on all platforms
1198 1004
1199 22-11-2014, MK, tag emdna-V10-00-56 1005 22-11-2014, MK, tag emdna-V10-00-56
1200 - Attempt to compile G4FastList on all platfo 1006 - Attempt to compile G4FastList on all platforms
1201 1007
1202 21-11-2014, MK, tag emdna-V10-00-55 1008 21-11-2014, MK, tag emdna-V10-00-55
1203 - Attempt to compile G4FastList with clang 1009 - Attempt to compile G4FastList with clang
1204 1010
1205 21-11-2014, MK, tag emdna-V10-00-54 1011 21-11-2014, MK, tag emdna-V10-00-54
1206 - Put back G4DNABrownianTransportation::fUseM 1012 - Put back G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1207 to true as long as the small distances to bou 1013 to true as long as the small distances to boundaries sent back by the navigator
1208 are not understood 1014 are not understood
1209 - Update G4ITNavigator2 to the G4Navigator of 1015 - Update G4ITNavigator2 to the G4Navigator of John
1210 1016
1211 21-11-2014, MK, tag emdna-V10-00-53 1017 21-11-2014, MK, tag emdna-V10-00-53
1212 - Attempt to solve the 'No track found' bug b 1018 - Attempt to solve the 'No track found' bug by using G4FastList and
1213 G4ManyFastLists - A 'list watcher' is added 1019 G4ManyFastLists - A 'list watcher' is added
1214 - G4DNABrownianTransportation::fUseMaximumTim 1020 - G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
1215 is false by default --> uses the random time 1021 is false by default --> uses the random time computation for crossing
1216 boundaries 1022 boundaries
1217 1023
1218 20-11-2014, SI, tag emdna-V10-00-52 1024 20-11-2014, SI, tag emdna-V10-00-52
1219 - Improved error message for missing data in 1025 - Improved error message for missing data in PW elastic model
1220 1026
1221 08-11-2014, MK, tag emdna-V10-00-51 1027 08-11-2014, MK, tag emdna-V10-00-51
1222 - Add an exception in G4MoleculeTable::GetMod 1028 - Add an exception in G4MoleculeTable::GetModel/GetDefinition
1223 when the asked item is not found 1029 when the asked item is not found
1224 1030
1225 03-11-2014 MK, tag emdna-V10-00-50 1031 03-11-2014 MK, tag emdna-V10-00-50
1226 - correct track creation by G4MoleculeGunMess 1032 - correct track creation by G4MoleculeGunMessenger
1227 1033
1228 03-11-2014 MK, tag emdna-V10-00-49 1034 03-11-2014 MK, tag emdna-V10-00-49
1229 - Remove useless classes 1035 - Remove useless classes
1230 - Correct a bug in G4MoleculeGun 1036 - Correct a bug in G4MoleculeGun
1231 1037
1232 28-10-2014 PA, tag emdna-V10-00-48 1038 28-10-2014 PA, tag emdna-V10-00-48
1233 - correct compilation warnings 1039 - correct compilation warnings
1234 1040
1235 28-10-2014 PA, tag emdna-V10-00-47 1041 28-10-2014 PA, tag emdna-V10-00-47
1236 - correct compilation warnings 1042 - correct compilation warnings
1237 1043
1238 28-10-2014 PA, tag emdna-V10-00-46 1044 28-10-2014 PA, tag emdna-V10-00-46
1239 - correction in sources.cmake 1045 - correction in sources.cmake
1240 1046
1241 28-10-2014 PA, tag emdna-V10-00-45 1047 28-10-2014 PA, tag emdna-V10-00-45
1242 - retag to add LEPTS 1048 - retag to add LEPTS
1243 1049
1244 28-10-2014 PA, tag emdna-V10-00-44 1050 28-10-2014 PA, tag emdna-V10-00-44
1245 - add LEPTS 1051 - add LEPTS
1246 1052
1247 25-10-2014 MK, tag emdna-V10-00-43 1053 25-10-2014 MK, tag emdna-V10-00-43
1248 - remove useless G4VITScheduler 1054 - remove useless G4VITScheduler
1249 1055
1250 25-10-2014 MK, tag emdna-V10-00-42 1056 25-10-2014 MK, tag emdna-V10-00-42
1251 - correct warnings 1057 - correct warnings
1252 1058
1253 24-10-2014 MK, tag emdna-V10-00-41 1059 24-10-2014 MK, tag emdna-V10-00-41
1254 - G4ITTimeStepper-->G4VScheduler 1060 - G4ITTimeStepper-->G4VScheduler
1255 - G4ITStepManager-->G4ITScheduler 1061 - G4ITStepManager-->G4ITScheduler
1256 - G4ITStepManager-->G4ITSchedulerMessenger 1062 - G4ITStepManager-->G4ITSchedulerMessenger
1257 - G4AllITManager & G4ITManager deleted 1063 - G4AllITManager & G4ITManager deleted
1258 - G4ITFinder added 1064 - G4ITFinder added
1259 - G4VITTrackHolder added 1065 - G4VITTrackHolder added
1260 - G4ITTrackHolder implemented 1066 - G4ITTrackHolder implemented
1261 - code cleaned + useless classes removed 1067 - code cleaned + useless classes removed
1262 1068
1263 24-10-2014 MK, tag emdna-V10-00-40 1069 24-10-2014 MK, tag emdna-V10-00-40
1264 - G4ITStepManager: remove verbose at closure 1070 - G4ITStepManager: remove verbose at closure time
1265 1071
1266 21-10-2014 MK, tag emdna-V10-00-39 1072 21-10-2014 MK, tag emdna-V10-00-39
1267 - try to solve crash at closure time 1073 - try to solve crash at closure time
1268 1074
1269 21-10-2014 MK, tag emdna-V10-00-38 1075 21-10-2014 MK, tag emdna-V10-00-38
1270 - remove G4MolecularConfiguration from the ma 1076 - remove G4MolecularConfiguration from the manager's
1271 table when deleted 1077 table when deleted
1272 - update disclaimer 1078 - update disclaimer
1273 1079
1274 17-10-2014 MK, tag emdna-V10-00-37 1080 17-10-2014 MK, tag emdna-V10-00-37
1275 - clean code 1081 - clean code
1276 - G4ITStepManager: one can ask why simulation 1082 - G4ITStepManager: one can ask why simulation stops
1277 - remove useless verbose 1083 - remove useless verbose
1278 1084
1279 17-10-2014 MK, tag emdna-V10-00-36 1085 17-10-2014 MK, tag emdna-V10-00-36
1280 - Call G4ITTimeStepper in ChemMan::InitMaster 1086 - Call G4ITTimeStepper in ChemMan::InitMaster
1281 - Remove inappropriate method in G4ITTrackHol 1087 - Remove inappropriate method in G4ITTrackHolder
1282 - G4DNASecondOrderReaction uses G4ITTimeStepp 1088 - G4DNASecondOrderReaction uses G4ITTimeStepper::GetTimeStep
1283 1089
1284 10-10-2014 MK, tag emdna-V10-00-35 1090 10-10-2014 MK, tag emdna-V10-00-35
1285 Avoid use of std::map at the applicatio 1091 Avoid use of std::map at the application level in TimeStepAction
1286 1092
1287 07-10-2014 MK, tag emdna-V10-00-34 1093 07-10-2014 MK, tag emdna-V10-00-34
1288 G4MolecularReactionTable : translate fr 1094 G4MolecularReactionTable : translate from french to english
1289 G4DNAChemistryManager : remove usage of 1095 G4DNAChemistryManager : remove usage of G4ITStepManager
1290 G4ITTimeStepper : use temporally as int 1096 G4ITTimeStepper : use temporally as interface to G4ITStepManager
1291 1097
1292 07-10-2014 MK, tag emdna-V10-00-33 1098 07-10-2014 MK, tag emdna-V10-00-33
1293 Initialize G4ITStepManager in G4DNAChem 1099 Initialize G4ITStepManager in G4DNAChemistryManager
1294 1100
1295 17-09-2014 MK, tag emdna-V10-00-32 1101 17-09-2014 MK, tag emdna-V10-00-32
1296 Add G4ITStepManager + messenger 1102 Add G4ITStepManager + messenger
1297 Tag before architecture change 1103 Tag before architecture change
1298 1104
1299 12-07-2014 SI, tag emdna-V10-00-31 1105 12-07-2014 SI, tag emdna-V10-00-31
1300 Removed obsolete class for electr 1106 Removed obsolete class for electron excitation
1301 1107
1302 27-06-2014 GCosmo, tag emdna-V10-00-30 1108 27-06-2014 GCosmo, tag emdna-V10-00-30
1303 - Get rid of obsolete 'register' keywor 1109 - Get rid of obsolete 'register' keyword in code.
1304 1110
1305 05-06-2014 SI, tag emdna-V10-00-29 1111 05-06-2014 SI, tag emdna-V10-00-29
1306 - added include of <deque> in G4DNAMill 1112 - added include of <deque> in G4DNAMillerGreenExcitationModel.hh
1307 - updated G4DNAIonisation and G4D 1113 - updated G4DNAIonisation and G4DNARuddIonisationExtendModel for
1308 G4GenericIon usage 1114 G4GenericIon usage
1309 - requires G4EMLOW6.39 1115 - requires G4EMLOW6.39
1310 1116
1311 04-06-2014 MK, tag emdna-V10-00-28 1117 04-06-2014 MK, tag emdna-V10-00-28
1312 Remove directory management/include/imp 1118 Remove directory management/include/impl
1313 Prepare for release 1119 Prepare for release
1314 1120
1315 04-06-2014 MK, tag emdna-V10-00-27 1121 04-06-2014 MK, tag emdna-V10-00-27
1316 Resolve several defects pointed o 1122 Resolve several defects pointed out by coverity
1317 Add interface G4ITTimeStepper 1123 Add interface G4ITTimeStepper
1318 Avoid usage of molecule iterators 1124 Avoid usage of molecule iterators as pointers
1319 1125
1320 03-06-2014 SI, tag emdna-V10-00-26 1126 03-06-2014 SI, tag emdna-V10-00-26
1321 Switched to DNAion for Si in 1127 Switched to DNAion for Si in G4DNAGenericIonsManager
1322 1128
1323 28-05-2014 VI, SI tag emdna-V10-00-25 1129 28-05-2014 VI, SI tag emdna-V10-00-25
1324 Added G4DNABornAngle and G4DN 1130 Added G4DNABornAngle and G4DNARuddAngle generators;
1325 Ionisation models switch to u 1131 Ionisation models switch to use angular generator
1326 interface 1132 interface
1327 1133
1328 12.05.2014 MK, tag emdna-V10-00-24 1134 12.05.2014 MK, tag emdna-V10-00-24
1329 Try to remove warnings 4 1135 Try to remove warnings 4
1330 1136
1331 12.05.2014 MK, tag emdna-V10-00-23 1137 12.05.2014 MK, tag emdna-V10-00-23
1332 Try to remove warnings 3 1138 Try to remove warnings 3
1333 1139
1334 12.05.2014 MK, tag emdna-V10-00-22 1140 12.05.2014 MK, tag emdna-V10-00-22
1335 Try to remove warnings 2 1141 Try to remove warnings 2
1336 1142
1337 12.05.2014 MK, tag emdna-V10-00-21 1143 12.05.2014 MK, tag emdna-V10-00-21
1338 Try to remove warnings 1144 Try to remove warnings
1339 1145
1340 09.05.2014 S. Incerti, tag emdna-V10-00-20 1146 09.05.2014 S. Incerti, tag emdna-V10-00-20
1341 Added Si to G4DNARuddIonisationEx 1147 Added Si to G4DNARuddIonisationExtendedModel
1342 on behalf of Z. Francis 1148 on behalf of Z. Francis
1343 G4EMLOW6.38 needed 1149 G4EMLOW6.38 needed
1344 1150
1345 07-04-2014 SI tag emdna-V10-00-19 1151 07-04-2014 SI tag emdna-V10-00-19
1346 Changed faster method interpolation in 1152 Changed faster method interpolation in
1347 G4DNABornIonisationModel 1153 G4DNABornIonisationModel
1348 1154
1349 04-04-2014 G.Cosmo tag emdna-V10-00-1 1155 04-04-2014 G.Cosmo tag emdna-V10-00-18
1350 Removed problematic #define in G4TrackS 1156 Removed problematic #define in G4TrackState.hh causing errors on
1351 Windows for overriding of system keywor 1157 Windows for overriding of system keyword 'Handle'...
1352 Corrected order of inclusion of some he 1158 Corrected order of inclusion of some headers and use of <>/"".
1353 1159
1354 04-04-2014 MK tag emdna-V10-00-17 1160 04-04-2014 MK tag emdna-V10-00-17
1355 Try to solve warnings when G4VERBOSE is 1161 Try to solve warnings when G4VERBOSE is off
1356 1162
1357 02-04-2014 MK tag emdna-V10 1163 02-04-2014 MK tag emdna-V10-00-16
1358 G4ITSafetyHelper: Force usage of G4Path 1164 G4ITSafetyHelper: Force usage of G4PathFinder for now
1359 1165
1360 02-04-2014 MK tag emdna-V10 1166 02-04-2014 MK tag emdna-V10-00-15
1361 Add preprocessor flags on files in dev 1167 Add preprocessor flags on files in dev to prevent build errors with gmake
1362 1168
1363 02-04-2014 MK tag emdna-V10 1169 02-04-2014 MK tag emdna-V10-00-14
1364 - on mac: template parameter declared a 1170 - on mac: template parameter declared as a friend class is supported only with c++11 which causes a warning
1365 -> this part is withdrawn for now 1171 -> this part is withdrawn for now
1366 1172
1367 02-04-2014 MK tag emdna-V10 1173 02-04-2014 MK tag emdna-V10-00-13
1368 - version 2 : try fixing the build erro 1174 - version 2 : try fixing the build error on mac
1369 1175
1370 02-04-2014 MK tag emdna-V10 1176 02-04-2014 MK tag emdna-V10-00-12
1371 - version 1 : try to fix build errors a 1177 - version 1 : try to fix build errors and warnings on mac
1372 1178
1373 02-04-2014 MK tag emdna-V10 1179 02-04-2014 MK tag emdna-V10-00-11
1374 - try to fix build error on windows pla 1180 - try to fix build error on windows platform - 3
1375 (G4MemStat & G4MolecularConfiguration) 1181 (G4MemStat & G4MolecularConfiguration)
1376 1182
1377 02-04-2014 MK tag emdna-V10 1183 02-04-2014 MK tag emdna-V10-00-10
1378 - try to fix build error on windows pla 1184 - try to fix build error on windows platform - 2
1379 (problem coming from having as a friend 1185 (problem coming from having as a friend class a template argument)
1380 1186
1381 02-04-2014 MK tag emdna-V10 1187 02-04-2014 MK tag emdna-V10-00-09
1382 - try to fix build error on windows pla 1188 - try to fix build error on windows platform
1383 1189
1384 01-04-2014 MK tag emdna-V10 1190 01-04-2014 MK tag emdna-V10-00-08
1385 - G4DNAChemistryManager.cc: remove a G4 1191 - G4DNAChemistryManager.cc: remove a G4cout in destructor causing a crash in test60
1386 - G4TrackState.hh: change 'typename' to 1192 - G4TrackState.hh: change 'typename' to 'class' in template argument of typewrapper
1387 1193
1388 01-04-2014 MK tag emdna-V10 1194 01-04-2014 MK tag emdna-V10-00-07
1389 - reset CMakeLists.txt 1195 - reset CMakeLists.txt
1390 1196
1391 01-04-2014 MK tag emdna-V10 1197 01-04-2014 MK tag emdna-V10-00-06
1392 - update chemistry 1198 - update chemistry
1393 1199
1394 01-04-2014 SI tag emdna-V10-00-05 1200 01-04-2014 SI tag emdna-V10-00-05
1395 - Modified calculation of secondary kin 1201 - Modified calculation of secondary kinetic for fast code
1396 1202
1397 27-03-2014 G.Cosmo tag emdna-V10-00-04 1203 27-03-2014 G.Cosmo tag emdna-V10-00-04
1398 - Corrected inclusion order of headers 1204 - Corrected inclusion order of headers and forward declations
1399 in G4MolecularConfiguration. 1205 in G4MolecularConfiguration.
1400 - Corrected typo in DLL import flag in 1206 - Corrected typo in DLL import flag in G4DNAWaterDissociationDisplacer.hh.
1401 1207
1402 25-03-2014 VS, SI tag emdna-V10-00-03 1208 25-03-2014 VS, SI tag emdna-V10-00-03
1403 - Added several clear() to vectors for 1209 - Added several clear() to vectors for MT
1404 1210
1405 17-03-2014 SI tag emdna-V10-00-02 1211 17-03-2014 SI tag emdna-V10-00-02
1406 - Modified G4DNAChampionElasticModel.cc 1212 - Modified G4DNAChampionElasticModel.cc to read
1407 high precision diff. cumulated 1213 high precision diff. cumulated cross section
1408 to be used with G4EMLOW6.36 1214 to be used with G4EMLOW6.36
1409 1215
1410 12-12-2013 M.K tag emdna-V10-00-01 1216 12-12-2013 M.K tag emdna-V10-00-01
1411 - G4DNAMolecularMaterial: Remove unused 1217 - G4DNAMolecularMaterial: Remove unused variable
1412 1218
1413 12-12-2013 M.K tag emdna-V10-00-00 1219 12-12-2013 M.K tag emdna-V10-00-00
1414 - G4DNAMolecularMaterial is modified to 1220 - G4DNAMolecularMaterial is modified to prevent segmentation fault in case
1415 a model is not created at initialisatio 1221 a model is not created at initialisation time
1416 1222
1417 21-11-2013 V.I. tag emdna-V09-06-22 1223 21-11-2013 V.I. tag emdna-V09-06-22
1418 - G4ITStepProcessor2 - removed ob 1224 - G4ITStepProcessor2 - removed obsolete unused header
1419 1225
1420 01-11-2013 M.K tag emdna-V09-06-21 1226 01-11-2013 M.K tag emdna-V09-06-21
1421 - Correct incorrect singleton che 1227 - Correct incorrect singleton check introduced in previous tag
1422 1228
1423 01-11-2013 M.K tag emdna-V09-06-20 1229 01-11-2013 M.K tag emdna-V09-06-20
1424 - Prepare for release bis 1230 - Prepare for release bis
1425 1231
1426 01-11-2013 M.K tag emdna-V09-06-19 1232 01-11-2013 M.K tag emdna-V09-06-19
1427 - Prepare for release 1233 - Prepare for release
1428 1234
1429 10-10-2013 M.K. tag emdna-V09-06-18 1235 10-10-2013 M.K. tag emdna-V09-06-18
1430 - Remove G4VERBOSE testing in G4D 1236 - Remove G4VERBOSE testing in G4DNABrownianTransportation::BuildPhysicsTable
1431 1237
1432 06-10-2013 M.K. tag emdna-V09-06-17 1238 06-10-2013 M.K. tag emdna-V09-06-17
1433 - Same as before once again 1239 - Same as before once again
1434 1240
1435 03-10-2013 M.K. tag emdna-V09-06-16 1241 03-10-2013 M.K. tag emdna-V09-06-16
1436 - Same as before 1242 - Same as before
1437 1243
1438 03-10-2013 M.K. tag emdna-V09-06-15 1244 03-10-2013 M.K. tag emdna-V09-06-15
1439 - Improve MT compatibility 1245 - Improve MT compatibility
1440 - Enhance G4DNAChemistryManager to be t 1246 - Enhance G4DNAChemistryManager to be the main interface used
1441 by the user - stage 1 1247 by the user - stage 1
1442 1248
1443 14-09-2013 M.Asai tag emdna-V09-06-14 1249 14-09-2013 M.Asai tag emdna-V09-06-14
1444 G4VProcess::SubtractNumberOfInter 1250 G4VProcess::SubtractNumberOfInteractionLengthLeft() is no longer
1445 a virtual methood since v9.6 and 1251 a virtual methood since v9.6 and thus it must not be overwritten
1446 with virtual keyword in G4VITProc 1252 with virtual keyword in G4VITProcess.
1447 1253
1448 12-09-2013 M.K. tag emdna-V09-06-13 1254 12-09-2013 M.K. tag emdna-V09-06-13
1449 Correction of an inadvertent modificati 1255 Correction of an inadvertent modification introduced in previous tag
1450 1256
1451 12-09-2013 M.K. tag emdna-V09-06-12 1257 12-09-2013 M.K. tag emdna-V09-06-12
1452 Correct bound checks in G4ITManager.icc 1258 Correct bound checks in G4ITManager.icc
1453 1259
1454 16-08-2013 S.I. tag emdna-V09-06-11 1260 16-08-2013 S.I. tag emdna-V09-06-11
1455 Adapted G4DNAGenericIonsManager to use 1261 Adapted G4DNAGenericIonsManager to use of G4DNAIons
1456 1262
1457 16-08-2013 S.I. tag emdna-V09-06-10 1263 16-08-2013 S.I. tag emdna-V09-06-10
1458 Added G4DNAIons 1264 Added G4DNAIons
1459 1265
1460 25-06-2013 M.K. tag emdna-V09-06-09 1266 25-06-2013 M.K. tag emdna-V09-06-09
1461 G4MoleculeID: Rectify initialization 1267 G4MoleculeID: Rectify initialization
1462 G4MoleculeCounter: Automatic switch bet 1268 G4MoleculeCounter: Automatic switch between unique_ptr or
1463 auto_ptr according to c++ std version 1269 auto_ptr according to c++ std version
1464 1270
1465 11-06-2013 G.Cosmo tag emdna-V09-06- 1271 11-06-2013 G.Cosmo tag emdna-V09-06-08
1466 Corrected static initialisation i 1272 Corrected static initialisation in G4VMolecularDecayDisplacer
1467 for problem accidentally introduc 1273 for problem accidentally introduced in previous tag.
1468 1274
1469 11-06-2013 G.Cosmo tag emdna-V09-06- 1275 11-06-2013 G.Cosmo tag emdna-V09-06-07
1470 Cleanup from automatic changes fo 1276 Cleanup from automatic changes for MT in classes G4Molecule,
1471 G4VMolecularDecayDisplacer, G4IT, 1277 G4VMolecularDecayDisplacer, G4IT, G4ITModelProcessor, G4VITProcess,
1472 G4ITTransportation, G4DNAChemistr 1278 G4ITTransportation, G4DNAChemistryManager, and porting MT
1473 compilation on Windows. 1279 compilation on Windows.
1474 1280
1475 06-06-2013 S.I. tag emdna-V09-06- 1281 06-06-2013 S.I. tag emdna-V09-06-06
1476 Updated G4DNABornIonisationModel 1282 Updated G4DNABornIonisationModel for speedup option
1477 Requires G4EMLOW version 6.33 1283 Requires G4EMLOW version 6.33
1478 1284
1479 25-05-2013 M.K. tag emdna-V09-06- 1285 25-05-2013 M.K. tag emdna-V09-06-05
1480 *Fix warning compilation in G4KDM 1286 *Fix warning compilation in G4KDMap for specific gcc version
1481 1287
1482 24-05-2013 M.K. tag emdna-V09-06- 1288 24-05-2013 M.K. tag emdna-V09-06-04
1483 * Track state class updated to fi 1289 * Track state class updated to fix compilation errors on mac
1484 but still not in usage 1290 but still not in usage
1485 1291
1486 23-05-2013 M.K. tag emdna-V09-06- 1292 23-05-2013 M.K. tag emdna-V09-06-03
1487 * G4KDMap : try fix error on std: 1293 * G4KDMap : try fix error on std:ceil call on windows
1488 1294
1489 23-V09-06-03-05-2013 M.K. tag emd 1295 23-V09-06-03-05-2013 M.K. tag emdna-V09-06-02
1490 * G4KDMap : used deque::iterator 1296 * G4KDMap : used deque::iterator
1491 1297
1492 1298
1493 22-05-2013 M.K. tag emdna-V09-06- 1299 22-05-2013 M.K. tag emdna-V09-06-01
1494 * Correct warning from G4KDTree.cc 1300 * Correct warning from G4KDTree.cc
1495 * G4KDMap : pop out elements from map 1301 * G4KDMap : pop out elements from map
1496 1302
1497 22-05-2013 M.K. tag emdna-V09-06-00 1303 22-05-2013 M.K. tag emdna-V09-06-00
1498 * !!! MT !!!! Promoted to thread-global 1304 * !!! MT !!!! Promoted to thread-global storage :
1499 --> G4DNAGenericIonManager 1305 --> G4DNAGenericIonManager
1500 --> G4DNAMolecularMaterial 1306 --> G4DNAMolecularMaterial
1501 --> G4DNAMolecularReactionTable 1307 --> G4DNAMolecularReactionTable
1502 * G4KDMap added 1308 * G4KDMap added
1503 * G4DNASmoluchowskiReactionModel : exce 1309 * G4DNASmoluchowskiReactionModel : exception description enhanced
1504 * G4ITTrackingInteractivity : "Initiali 1310 * G4ITTrackingInteractivity : "Initialize()" method added for simplify
1505 initialization of daughter classes 1311 initialization of daughter classes
1506 * G4DNAChemistryManager : AddEmptyLineI 1312 * G4DNAChemistryManager : AddEmptyLineInOuputFile method added
1507 1313
1508 12-11-2012 M.K tag emdna-V09-05- 1314 12-11-2012 M.K tag emdna-V09-05-35
1509 Remove unnecessary abort() and ex 1315 Remove unnecessary abort() and exit(-1) previously introduced to avoid
1510 coverity warnings (rev 64993) 1316 coverity warnings (rev 64993)
1511 1317
1512 06-11-2012 G.Cosmo tag emdna-V09 1318 06-11-2012 G.Cosmo tag emdna-V09-05-34
1513 Minor fixes for porting on AIX; m 1319 Minor fixes for porting on AIX; mainly on use of const signature
1514 for objects in maps... 1320 for objects in maps...
1515 1321
1516 04-11-2012 M.K. tag emdna-V09-05-33 1322 04-11-2012 M.K. tag emdna-V09-05-33
1517 G4IT : transform G4ITTrackingInfo 1323 G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
1518 G4ITTrackingManager : get rid of 1324 G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
1519 G4ITStepProcessor.cc : correct co 1325 G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
1520 G4ITTransportationManager.hh : pu 1326 G4ITTransportationManager.hh : put default constructor as private (rev 64718)
1521 G4VITModel.cc : rename variables 1327 G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
1522 G4MolecularDecayChannel.cc : adap 1328 G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
1523 G4MoleculeCounter.cc : get rid of 1329 G4MoleculeCounter.cc : get rid of duplicated layout (------)
1524 G4DNAMolecularStepByStepModel : a 1330 G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
1525 G4ITTrackingManager.hh : remove r 1331 G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
1526 Ionisation Models (Born, Rudd, Ru 1332 Ionisation Models (Born, Rudd, RuddExtended) :
1527 set fAtomDeexcitation = 0 (re 1333 set fAtomDeexcitation = 0 (rev 64723)
1528 add "else" before "if" statem 1334 add "else" before "if" statements and
1529 add variables to avoid ma 1335 add variables to avoid many checks on particleDefinition. (rev 64724)
1530 dna.files : update files (rev 647 1336 dna.files : update files (rev 64725)
1531 1337
1532 03-11-2012 S.I. tag emdna-V09-05-32 1338 03-11-2012 S.I. tag emdna-V09-05-32
1533 Switched to usage of SetEmModel a 1339 Switched to usage of SetEmModel and EmModel in all dna/processes
1534 classes 1340 classes
1535 1341
1536 24-10-2012 M.K tag emdna-V09 1342 24-10-2012 M.K tag emdna-V09-05-31
1537 G4ITNavigator is updated to new i 1343 G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
1538 (previously commented) 1344 (previously commented)
1539 1345
1540 23-10-2012 M.K tag emdna-V09 1346 23-10-2012 M.K tag emdna-V09-05-30
1541 Add exception in G4DNASecondOrder 1347 Add exception in G4DNASecondOrderReaction
1542 Add carriage return in G4DNASmolu 1348 Add carriage return in G4DNASmoluchowskiReaction cc and hh
1543 1349
1544 18-10-2012 M.K tag emdna-V09 1350 18-10-2012 M.K tag emdna-V09-05-29
1545 Previous tag did not include hist 1351 Previous tag did not include history changes
1546 1352
1547 18-10-2012 M.K tag emdna-V09 1353 18-10-2012 M.K tag emdna-V09-05-28
1548 Remove warning 1354 Remove warning
1549 1355
1550 17-10-2012 M.K tag emdna-V09 1356 17-10-2012 M.K tag emdna-V09-05-27
1551 Correct a typo from previous tag 1357 Correct a typo from previous tag
1552 1358
1553 17-10-2012 M.K tag emdna-V09 1359 17-10-2012 M.K tag emdna-V09-05-26
1554 Correct information in headers 1360 Correct information in headers
1555 Rename G4DNADiffustionControlledM 1361 Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
1556 G4ITNavigator updated to new inte 1362 G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
1557 1363
1558 01-10-2012 SI, P.Pater tag emdna-V09 1364 01-10-2012 SI, P.Pater tag emdna-V09-05-25
1559 Force kinetic energy to zero for 1365 Force kinetic energy to zero for real killings in models.
1560 1366
1561 12-07-2012 G.Cosmo tag emdna-V09 1367 12-07-2012 G.Cosmo tag emdna-V09-05-24
1562 Explicitly use inclusion of heade 1368 Explicitly use inclusion of headers for system of units and physical
1563 constants, in plan to remove impl 1369 constants, in plan to remove implicit inclusion from globals.hh.
1564 1370
1565 11.07.2012 M.K tag emdna-V09 1371 11.07.2012 M.K tag emdna-V09-05-23
1566 Correct warnings introduce in previous 1372 Correct warnings introduce in previous tag
1567 1373
1568 11.07.2012 M.K tag emdna-V09 1374 11.07.2012 M.K tag emdna-V09-05-22
1569 Tag to be proposed 1375 Tag to be proposed
1570 1376
1571 25.06.2012 M.K tag emdna-V09-05-21 1377 25.06.2012 M.K tag emdna-V09-05-21
1572 Fix semantic warning related to f 1378 Fix semantic warning related to forward declaration of G4ITNavigator_Lock
1573 Modify molecule's name 1379 Modify molecule's name
1574 1380
1575 21.06.2012 S.I tag emdna-V09-05-20 1381 21.06.2012 S.I tag emdna-V09-05-20
1576 Update of electron elastic scatte 1382 Update of electron elastic scattering low limit
1577 1383
1578 09.06.2012 M.K tag emdna-V09-05-19 1384 09.06.2012 M.K tag emdna-V09-05-19
1579 Fixed shadowing 1385 Fixed shadowing
1580 1386
1581 04.06.2012 M.K tag emdna-V09-05-18 1387 04.06.2012 M.K tag emdna-V09-05-18
1582 Add G4ITTrackingInteractivity + c 1388 Add G4ITTrackingInteractivity + correct coverity warnings
1583 1389
1584 24.05.2012 M.K tag emdna-V09-05-17 1390 24.05.2012 M.K tag emdna-V09-05-17
1585 Remove unnecessary call of pow in 1391 Remove unnecessary call of pow in G4DNASecondOrderReaction
1586 1392
1587 23.05.2012 M.K tag emdna-V09-05-16 1393 23.05.2012 M.K tag emdna-V09-05-16
1588 Add initialisation of G4ITTrackHo 1394 Add initialisation of G4ITTrackHolder in copy constructor of
1589 G4ITStepManager 1395 G4ITStepManager
1590 Prevent call of destructor of G4I 1396 Prevent call of destructor of G4ITStepManager and
1591 G4DNAChemistryManager 1397 G4DNAChemistryManager
1592 1398
1593 23.05.2012 M.K tag emdna-V09-05-15 1399 23.05.2012 M.K tag emdna-V09-05-15
1594 Display warning (only once) from 1400 Display warning (only once) from G4DNAMolecularMaterial
1595 when one of its methods is called 1401 when one of its methods is called using a material that is
1596 not defined as a molecule 1402 not defined as a molecule
1597 1403
1598 21.05.2012 M.K tag emdna-V09-05-14 1404 21.05.2012 M.K tag emdna-V09-05-14
1599 Modify G4DNAMolecularMaterial 1405 Modify G4DNAMolecularMaterial
1600 Modify G4DNADamages 1406 Modify G4DNADamages
1601 Add G4DNASecondOrderReaction prot 1407 Add G4DNASecondOrderReaction prototype
1602 Modify all models to use G4DNAMol 1408 Modify all models to use G4DNAMolecularMaterial
1603 1409
1604 14.05.2012 M.K tag emdna-V09-05-13 1410 14.05.2012 M.K tag emdna-V09-05-13
1605 Add G4DNAMolecularMaterial 1411 Add G4DNAMolecularMaterial
1606 Add G4DNADamages 1412 Add G4DNADamages
1607 1413
1608 10.05.2012 M.K tag emdna-V09-05-12 1414 10.05.2012 M.K tag emdna-V09-05-12
1609 Add the possibility of calling G4 1415 Add the possibility of calling G4ITStepManager::EndTracking()
1610 from UserReactionAction::EndProce 1416 from UserReactionAction::EndProcessing()
1611 1417
1612 08.05.2012 M.K tag emdna-V09-05-11 1418 08.05.2012 M.K tag emdna-V09-05-11
1613 Use inverseErf from CLHEP 1419 Use inverseErf from CLHEP
1614 1420
1615 03.05.2012 M.K tag emdna-V09-05-10 1421 03.05.2012 M.K tag emdna-V09-05-10
1616 Add erfc function for windows com 1422 Add erfc function for windows compilator (VC++)
1617 1423
1618 03.05.2012 M.K tag emdna-V09-05-09 1424 03.05.2012 M.K tag emdna-V09-05-09
1619 Add an exception in molecular dec 1425 Add an exception in molecular decay, in case no decay channel was proposed in input
1620 1426
1621 03.05.2012 M.K tag emdna-V09-05-08 1427 03.05.2012 M.K tag emdna-V09-05-08
1622 Add products of dissociative atta 1428 Add products of dissociative attachments (as a molecular decay)
1623 Add new methods in G4ChemistryMan 1429 Add new methods in G4ChemistryManager :
1624 - PushMolecule 1430 - PushMolecule
1625 - PushMoleculeAtParentTimeAndPlac 1431 - PushMoleculeAtParentTimeAndPlace
1626 Reset() at the end of G4ITStepMan 1432 Reset() at the end of G4ITStepManager::Process()
1627 1433
1628 30.03.2012 M.K tag emdna-V09-05-07 1434 30.03.2012 M.K tag emdna-V09-05-07
1629 Same as emdna-V09-05-06 1435 Same as emdna-V09-05-06
1630 1436
1631 30.03.2012 M.K tag emdna-V09-05-06 1437 30.03.2012 M.K tag emdna-V09-05-06
1632 1) Add separate navigator for syn 1438 1) Add separate navigator for synchronous tracking
1633 New classes : 1439 New classes :
1634 * G4ITTransportationManager 1440 * G4ITTransportationManager
1635 * G4ITNavigator (just a small cha 1441 * G4ITNavigator (just a small change from G4Navigator)
1636 2) A messenger for G4ITStepManage 1442 2) A messenger for G4ITStepManager :
1637 * G4ITSteppingMessenger 1443 * G4ITSteppingMessenger
1638 3) Solve bugs with normal and bro 1444 3) Solve bugs with normal and brownian ITTransportation
1639 1445
1640 14.03.2012 M.K tag emdna-V09-05-05 1446 14.03.2012 M.K tag emdna-V09-05-05
1641 * int G4VITProcess::fProcessID 1447 * int G4VITProcess::fProcessID
1642 int G4VITProcess::fNbProcess 1448 int G4VITProcess::fNbProcess
1643 -> become size_t + related change 1449 -> become size_t + related changes
1644 * when a poststep process propo 1450 * when a poststep process proposes an IL < 0
1645 => considered as a time, and tran 1451 => considered as a time, and transportation::computestep
1646 is used 1452 is used
1647 1453
1648 14.03.2012 M.K tag emdna-V09-05-04 1454 14.03.2012 M.K tag emdna-V09-05-04
1649 Fix compilation warning 1455 Fix compilation warning
1650 1456
1651 14.03.2012 M.K tag emdna-V09-05-03 1457 14.03.2012 M.K tag emdna-V09-05-03
1652 Improve the management of information i 1458 Improve the management of information in G4ITStepProcessor
1653 Fix coverity warnings 1459 Fix coverity warnings
1654 1460
1655 18.01.2012 S.I. tag emdna-V09 1461 18.01.2012 S.I. tag emdna-V09-05-02
1656 Removal of G4Water* classes in ut 1462 Removal of G4Water* classes in utils
1657 1463
1658 11.01.2012 M.K tag emdna-V09 1464 11.01.2012 M.K tag emdna-V09-05-01
1659 Bug fix in G4DNAChemistryManager: 1465 Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
1660 concerning the final position of 1466 concerning the final position of the solvated electron
1661 using Sanche thermalization 1467 using Sanche thermalization
1662 1468
1663 16.12.2011 S.I tag emdna-V09 1469 16.12.2011 S.I tag emdna-V09-05-00
1664 Updated source of cross section f 1470 Updated source of cross section file for elastic scattering
1665 1471
1666 25.11.2011 M.K tag emdna-V09 1472 25.11.2011 M.K tag emdna-V09-04-52
1667 Correct a typo in previous tag 1473 Correct a typo in previous tag
1668 1474
1669 25.11.2011 M.K tag emdna-V09 1475 25.11.2011 M.K tag emdna-V09-04-51
1670 Place the reaction products at th 1476 Place the reaction products at the reaction site
1671 rather than center of mass in DNA 1477 rather than center of mass in DNAMolecularReaction
1672 1478
1673 21.11.2011 M.K tag emdna-V09 1479 21.11.2011 M.K tag emdna-V09-04-50
1674 Change the name of macros in AddC 1480 Change the name of macros in AddClone_def.hh to
1675 avoid conflicts with ROOT. 1481 avoid conflicts with ROOT.
1676 Add short class description (comm 1482 Add short class description (comments added in the new files)
1677 in JavaDoc style for doxygen use. 1483 in JavaDoc style for doxygen use.
1678 1484
1679 21.11.2011 M.K tag emdna-V09 1485 21.11.2011 M.K tag emdna-V09-04-49
1680 Correct a wrong condition in the 1486 Correct a wrong condition in the step manager
1681 Avoid the call of Green brownian 1487 Avoid the call of Green brownian bridge when
1682 the time step is equal to zero (b 1488 the time step is equal to zero (bug)
1683 Give priority to G4Processes over 1489 Give priority to G4Processes over reaction processes
1684 when the time steps returned by t 1490 when the time steps returned by the time stepper
1685 and the processes are equal 1491 and the processes are equal
1686 Improve verbose 1492 Improve verbose
1687 1493
1688 21.11.2011 M.K tag emdna-V09 1494 21.11.2011 M.K tag emdna-V09-04-48
1689 Fix incoherent management of time 1495 Fix incoherent management of time and secondaries in management/
1690 Avoid memory leak related to the 1496 Avoid memory leak related to the management of ITs
1691 Correct verbose in new models & p 1497 Correct verbose in new models & process
1692 1498
1693 18.11.2011 M.K tag emdna-V09 1499 18.11.2011 M.K tag emdna-V09-04-47
1694 Fix uninitialized boolean variabl 1500 Fix uninitialized boolean variable (fWriteFile)
1695 in G4DNAChemistryManager 1501 in G4DNAChemistryManager
1696 1502
1697 18.11.2011 M.K tag emdna-V09 1503 18.11.2011 M.K tag emdna-V09-04-46
1698 Fix compilation error in G4TrackL 1504 Fix compilation error in G4TrackList on macOs
1699 Clean G4DNAMolecularDecayDisplace 1505 Clean G4DNAMolecularDecayDisplacer from comments
1700 Correct a typo in G4DNAChemistryM 1506 Correct a typo in G4DNAChemistryManager (H20 -> H2O)
1701 1507
1702 15.11.2011 G.Cosmo tag emdna-V09 1508 15.11.2011 G.Cosmo tag emdna-V09-04-45
1703 Fixes to initialisation of static 1509 Fixes to initialisation of static data in G4VMolecularDecayDisplacer
1704 and G4DNAMolecularDecayDisplacer, 1510 and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
1705 Windows. 1511 Windows.
1706 Fixed compilation warning on icc 1512 Fixed compilation warning on icc compiler in
1707 G4MolecularDecayTable.cc 1513 G4MolecularDecayTable.cc
1708 1514
1709 10.11.2011 M.K. tag emdna-V09 1515 10.11.2011 M.K. tag emdna-V09-04-44
1710 Fix a bug in G4DNATransformElectr 1516 Fix a bug in G4DNATransformElectronModel
1711 1517
1712 10.11.2011 M.K. tag emdna-V09 1518 10.11.2011 M.K. tag emdna-V09-04-43
1713 Clean classes for release 1519 Clean classes for release
1714 Add comment into source 1520 Add comment into source
1715 Change name of some methods 1521 Change name of some methods
1716 Transform two independent singlet 1522 Transform two independent singleton pointers to auto_ptr
1717 in order to prevent the user from 1523 in order to prevent the user from deleting those classes
1718 (ITStepMan + DNAChemMan) 1524 (ITStepMan + DNAChemMan)
1719 1525
1720 10.11.2011 M.K. tag emdna-V09 1526 10.11.2011 M.K. tag emdna-V09-04-42
1721 For safety (at the time of static 1527 For safety (at the time of static members destruction)
1722 change fgManager in MolConf into 1528 change fgManager in MolConf into a pointer delete by
1723 the chemistryManager. 1529 the chemistryManager.
1724 1530
1725 09.11.2011 M.K. tag emdna-V09 1531 09.11.2011 M.K. tag emdna-V09-04-41
1726 Add friend class G4TrackList_Boun 1532 Add friend class G4TrackList_Boundary;
1727 in G4TrackListNode. 1533 in G4TrackListNode.
1728 Simplify and improve the use of d 1534 Simplify and improve the use of dnaChemMan
1729 Add more convenient methods in us 1535 Add more convenient methods in userReactionAction
1730 1536
1731 08.11.2011 M.K. tag emdna-V09 1537 08.11.2011 M.K. tag emdna-V09-04-40
1732 Fix coverity warnings 1538 Fix coverity warnings
1733 1539
1734 07.11.2011 M.K. tag emdna-V09 1540 07.11.2011 M.K. tag emdna-V09-04-39
1735 Add correct types/sub-types for D 1541 Add correct types/sub-types for DNAElectronSolvatation
1736 DNAMolecularDecay, DNABrownianTra 1542 DNAMolecularDecay, DNABrownianTransportation, ITTransp
1737 Add the possibility to link a dec 1543 Add the possibility to link a decay time to a given
1738 electronic configuration while de 1544 electronic configuration while declaring the decay
1739 scheme through : G4MoleculeDef::A 1545 scheme through : G4MoleculeDef::AddeConfToExcitedState
1740 Clean classes for release 1546 Clean classes for release
1741 1547
1742 03.11.2011 M.K. tag emdna-V09 1548 03.11.2011 M.K. tag emdna-V09-04-38
1743 Add dna libs in sources.cmake 1549 Add dna libs in sources.cmake
1744 1550
1745 03.11.2011 M.K. tag emdna-V09 1551 03.11.2011 M.K. tag emdna-V09-04-37
1746 Add G4ITStepManager fVerbose 1552 Add G4ITStepManager fVerbose
1747 Add dna includes in sources.cmake 1553 Add dna includes in sources.cmake
1748 1554
1749 01.11.2011 M.K. tag emdna-V09 1555 01.11.2011 M.K. tag emdna-V09-04-36
1750 Remove warnings on G4ITModelProce 1556 Remove warnings on G4ITModelProcessor,
1751 G4ITTransportation, G4TrackList o 1557 G4ITTransportation, G4TrackList on Windows
1752 1558
1753 01.11.2011 G.Cosmo 1559 01.11.2011 G.Cosmo
1754 Renamed export flags for DLL buil 1560 Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
1755 updated GNUMakefiles to have it p 1561 updated GNUMakefiles to have it properly defined.
1756 1562
1757 31.10.2011 M.K tag emdna-V09-04-35 1563 31.10.2011 M.K tag emdna-V09-04-35
1758 Remove obsolete G4Exception 1564 Remove obsolete G4Exception
1759 Remove "friend class G4KDTree" in G4KDN 1565 Remove "friend class G4KDTree" in G4KDNode
1760 Remove G4VITProcessor and all relatives 1566 Remove G4VITProcessor and all relatives
1761 Fix windows compilation errors & warnin 1567 Fix windows compilation errors & warnings
1762 1568
1763 28.10.2011 M.K tag emdna-V09-04-34 1569 28.10.2011 M.K tag emdna-V09-04-34
1764 Remove __PRETTY_FUNCTION__ introd 1570 Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
1765 Plus remove obsolete G4Exception 1571 Plus remove obsolete G4Exception
1766 1572
1767 28.10.2011 M.K tag emdna-V09-04-33 1573 28.10.2011 M.K tag emdna-V09-04-33
1768 Displace G4DNAChemistryManager, G 1574 Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
1769 G4VDNAReactionModel to utils 1575 G4VDNAReactionModel to utils
1770 Displace G4DNAMoleculeEncouterSte 1576 Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
1771 to models 1577 to models
1772 1578
1773 27.10.2011 M.K tag emdna-V09-04-32 1579 27.10.2011 M.K tag emdna-V09-04-32
1774 Fix BornIonisation + the two RuddIoni 1580 Fix BornIonisation + the two RuddIoni
1775 coverity errors. 1581 coverity errors.
1776 1582
1777 26.10.2011 M.K tag emdna-V09-04-31 1583 26.10.2011 M.K tag emdna-V09-04-31
1778 change std::shared_ptr to CLHEP::shared 1584 change std::shared_ptr to CLHEP::shared_ptr
1779 1585
1780 26.10.2011 M.K. tag emdna-V09-04-30 1586 26.10.2011 M.K. tag emdna-V09-04-30
1781 Memory leak fixes 1587 Memory leak fixes
1782 G4MolecularConfiguration::fManager adde 1588 G4MolecularConfiguration::fManager added
1783 1589
1784 26.10.2011 M.K. tag emdna-V09-04-29 1590 26.10.2011 M.K. tag emdna-V09-04-29
1785 G4DNAIonisation : add models for C/N/O/ 1591 G4DNAIonisation : add models for C/N/O/Fe
1786 Add electron solvatation process & mode 1592 Add electron solvatation process & models
1787 Add chemical processes 1593 Add chemical processes
1788 1594
1789 21.10.2011 M.K. tag emdna-V09-04-28 1595 21.10.2011 M.K. tag emdna-V09-04-28
1790 Same as emdna-V09-04-27 including model 1596 Same as emdna-V09-04-27 including models/ & processes/ from
1791 emdna-V09-04-24 1597 emdna-V09-04-24
1792 1598
1793 21.10.2011 M.K. tag emdna-V09-04-27 1599 21.10.2011 M.K. tag emdna-V09-04-27
1794 CMake fixes from emdna-V09-04-24 1600 CMake fixes from emdna-V09-04-24
1795 1601
1796 21.10.2011 M.K. tag emdna-V09-04-26 1602 21.10.2011 M.K. tag emdna-V09-04-26
1797 Bug fixes and new dev from the previous 1603 Bug fixes and new dev from the previous tag
1798 1604
1799 21.10.2011 S. Incerti tag emdna-V09-04-25 1605 21.10.2011 S. Incerti tag emdna-V09-04-25
1800 Extension of ionisation by HZE proposed 1606 Extension of ionisation by HZE proposed by Z. Francis
1801 1607
1802 20.10.2011 M.K. tag emdna-V09-04-24 1608 20.10.2011 M.K. tag emdna-V09-04-24
1803 Bug fixes and new dev from the previous 1609 Bug fixes and new dev from the previous tag
1804 1610
1805 07.10.2011 M.K. tag emdna-V09-04-23 1611 07.10.2011 M.K. tag emdna-V09-04-23
1806 First tag with "molecules" files 1612 First tag with "molecules" files
1807 1613
1808 07.10.2011 M.K. tag emdna-V09-04-22 1614 07.10.2011 M.K. tag emdna-V09-04-22
1809 Add molecules+management directory 1615 Add molecules+management directory
1810 First tag with "management" files 1616 First tag with "management" files
1811 1617
1812 09.09.2011 G.Folger tag emdna-V09 1618 09.09.2011 G.Folger tag emdna-V09-04-21
1813 utils/sources.cmake: remove refer 1619 utils/sources.cmake: remove reference to non-existant
1814 G4DNAMoleculeManager.cc 1620 G4DNAMoleculeManager.cc
1815 1621
1816 05.09.2011 A. M. M. K., S. I., tag emdna-V09 1622 05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
1817 Updated sources.make and CMakeLis 1623 Updated sources.make and CMakeLists.txt
1818 1624
1819 30.08.2011 A. M. M. K., S. I., tag emdna-V09 1625 30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
1820 Reorganized whole architecture. 1626 Reorganized whole architecture.
1821 1627
1822 24.08.2011 A. Mantero, tag emdna-V09-04-18 1628 24.08.2011 A. Mantero, tag emdna-V09-04-18
1823 Fixed a bug regarding energy depo 1629 Fixed a bug regarding energy deposition (bindingEnergy=0
1824 if no deexcitation) 1630 if no deexcitation)
1825 1631
1826 22.08.2011 S. Incerti, tag emdna-V09-04-17 1632 22.08.2011 S. Incerti, tag emdna-V09-04-17
1827 Changed code (em0006) numbering f 1633 Changed code (em0006) numbering for G4Exception
1828 1634
1829 19.08.2011 S. Incerti, tag emdna-V09-04-16 1635 19.08.2011 S. Incerti, tag emdna-V09-04-16
1830 Switched to new G4Exception synta 1636 Switched to new G4Exception syntax
1831 1637
1832 04.08.2011 A. Mantero, tag emdna-V09-04-15 1638 04.08.2011 A. Mantero, tag emdna-V09-04-15
1833 Added enhanced debug information 1639 Added enhanced debug information in ionisation models
1834 1640
1835 02.08.2011 S. Incerti, tag emdna-V09-04-14 1641 02.08.2011 S. Incerti, tag emdna-V09-04-14
1836 Removed wrong pointer delete in G4DNARu 1642 Removed wrong pointer delete in G4DNARuddIonisation*
1837 1643
1838 28.07.2011 S. Incerti, tag emdna-V09-04-13 1644 28.07.2011 S. Incerti, tag emdna-V09-04-13
1839 Removed obsolete information. 1645 Removed obsolete information.
1840 1646
1841 28.07.2011 S. Incerti, tag emdna-V09-04-12 1647 28.07.2011 S. Incerti, tag emdna-V09-04-12
1842 Updated deexcitation initialization in 1648 Updated deexcitation initialization in ionization models.
1843 1649
1844 21.07.2011 A. Mantero, tag emdna-V09-04-11 1650 21.07.2011 A. Mantero, tag emdna-V09-04-11
1845 Coverity warnings removal 1651 Coverity warnings removal
1846 1652
1847 11.07.2011 S.Incerti, tag emdna-V09-04-10 1653 11.07.2011 S.Incerti, tag emdna-V09-04-10
1848 - Increased energy limits for 1654 - Increased energy limits for
1849 G4DNAChargeIncrease 1655 G4DNAChargeIncrease
1850 G4DNAChargeDecrease 1656 G4DNAChargeDecrease
1851 G4DNADingfelderChargeIncreaseModel 1657 G4DNADingfelderChargeIncreaseModel
1852 G4DNADingflederChargeDecreaseModel 1658 G4DNADingflederChargeDecreaseModel
1853 in collaboration with Ziad F. 1659 in collaboration with Ziad F.
1854 - This tag includes Alfonso's upgrade 1660 - This tag includes Alfonso's upgrade
1855 of ionisation classes for Auger e- 1661 of ionisation classes for Auger e-
1856 1662
1857 16.05.2011 A.Mantero, tag emdna-V09-04-09 1663 16.05.2011 A.Mantero, tag emdna-V09-04-09
1858 Further compilation warnings removal 1664 Further compilation warnings removal
1859 1665
1860 16.05.2011 A.Mantero, tag emdna-V09-04-08 1666 16.05.2011 A.Mantero, tag emdna-V09-04-08
1861 Compilation warnings removal 1667 Compilation warnings removal
1862 1668
1863 12.05.2011 A.Mantero, tag emdna-V09-04-07 1669 12.05.2011 A.Mantero, tag emdna-V09-04-07
1864 added Atomic Deexcitation to Ionisation 1670 added Atomic Deexcitation to Ionisation Models
1865 1671
1866 04.05.2011 S. Incerti, tag emdna-V09-04-06 1672 04.05.2011 S. Incerti, tag emdna-V09-04-06
1867 Fixed compilation error on icc in 1673 Fixed compilation error on icc in
1868 G4DNADingfelderChargeIncreaseModel.cc. 1674 G4DNADingfelderChargeIncreaseModel.cc.
1869 1675
1870 03.05.2011 S. Incerti, tag emdna-V09-04-05 1676 03.05.2011 S. Incerti, tag emdna-V09-04-05
1871 Changed process sub-type numberin 1677 Changed process sub-type numbering.
1872 1678
1873 30.04.2011 S. Incerti, tag emdna-V09-04-04 1679 30.04.2011 S. Incerti, tag emdna-V09-04-04
1874 Fixed coverity warnings. 1680 Fixed coverity warnings.
1875 1681
1876 05.04.2011 S. Incerti, tag emdna-V09-04-03 1682 05.04.2011 S. Incerti, tag emdna-V09-04-03
1877 Updated all models for handling o 1683 Updated all models for handling of variable density.
1878 1684
1879 17.03.2011 S. Incerti, tag emdna-V09-04-02 1685 17.03.2011 S. Incerti, tag emdna-V09-04-02
1880 Addition of dependencies to confi 1686 Addition of dependencies to configuration files.
1881 1687
1882 17.03.2011 S. Incerti, tag emdna-V09-04-01 1688 17.03.2011 S. Incerti, tag emdna-V09-04-01
1883 Addition of all files. 1689 Addition of all files.
1884 1690
1885 13.02.2011 S. Incerti, tag emdna-V09-04-00 1691 13.02.2011 S. Incerti, tag emdna-V09-04-00
1886 Creation of dna sub-package in el 1692 Creation of dna sub-package in electromagnetic category.